Skip to content
CI

annogroups: design spec + Phase 1 cross-compaction handoff #122

Sign in to view logs

annogroups: design spec + Phase 1 cross-compaction handoff

annogroups: design spec + Phase 1 cross-compaction handoff #122

Triggered via push June 18, 2026 08:42
@000specific000specific
pushed 8675af4
main
Status Failure
Total duration 35s
Artifacts –

ci.yml

on: push
Validate YAML files
21s
Validate YAML files
Validate Python syntax
26s
Validate Python syntax
Validate shell scripts
22s
Validate shell scripts
Check project structure
5s
Check project structure
Check documentation
6s
Check documentation
Test demo (placeholder)
6s
Test demo (placeholder)
Fit to window
Zoom out
Zoom in

Annotations

2 errors and 16 warnings
Check project structure
Process completed with exit code 1.
Validate YAML files: ./gigantic_project-COPYME/subprojects/orthogroups/BLOCK_orthofinder/workflow-COPYME-run_orthofinder/START_HERE-user_config.yaml#L49
49:1 [key-duplicates] duplication of key "cpus" in mapping
Check documentation
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Test demo (placeholder)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Check project structure
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate shell scripts
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files: ./gigantic_project-COPYME/subprojects/homolog_counts/BLOCK_homolog_counts/workflow-COPYME-homolog_counts/START_HERE-user_config.yaml#L39
39:27 [colons] too many spaces after colon
Validate YAML files: ./gigantic_project-COPYME/subprojects/orthogroups/BLOCK_orthohmm_GIGANTIC/workflow-COPYME-run_orthohmm_GIGANTIC/ai/conda_environment.yml#L47
47:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/orthogroups/BLOCK_orthohmm/workflow-COPYME-run_orthohmm/ai/conda_environment.yml#L47
47:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/orthogroups/BLOCK_broccoli/workflow-COPYME-run_broccoli/ai/conda_environment.yml#L52
52:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_groups/gene_groups_hgnc-COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_groups/gene_groups-COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/annotations_hmms/BLOCK_metapredict/workflow-COPYME-run_metapredict/ai/conda_environment.yml#L43
43:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/annotations_hmms/BLOCK_tmbed/workflow-COPYME-run_tmbed/ai/conda_environment.yml#L57
57:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_families/gene_family_COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/research_notebook/research_ai/subproject-genomesDB/ncbi_genomes-gigantic_T1_toolkit/toolkit-COPYME-ncbi_genomes_T1/START_HERE-user_config.yaml#L72
72:15 [colons] too many spaces after colon
Validate Python syntax
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-python@v5. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/