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annogroups: Composite Clades + Species Tree Deconvolution (generalize… #128

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annogroups: Composite Clades + Species Tree Deconvolution (generalize…

annogroups: Composite Clades + Species Tree Deconvolution (generalize… #128

Triggered via push June 27, 2026 06:43
@000specific000specific
pushed 1115309
main
Status Failure
Total duration 24s
Artifacts –

ci.yml

on: push
Validate YAML files
20s
Validate YAML files
Validate Python syntax
21s
Validate Python syntax
Validate shell scripts
22s
Validate shell scripts
Check project structure
4s
Check project structure
Check documentation
5s
Check documentation
Test demo (placeholder)
3s
Test demo (placeholder)
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2 errors and 16 warnings
Check project structure
Process completed with exit code 1.
Validate YAML files: ./gigantic_project-COPYME/subprojects/orthogroups/BLOCK_orthofinder/workflow-COPYME-run_orthofinder/START_HERE-user_config.yaml#L49
49:1 [key-duplicates] duplication of key "cpus" in mapping
Test demo (placeholder)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Check project structure
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Check documentation
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_groups/gene_groups_hgnc-COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_groups/gene_groups-COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/annotations_hmms/BLOCK_metapredict/workflow-COPYME-run_metapredict/ai/conda_environment.yml#L43
43:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/annotations_hmms/BLOCK_tmbed/workflow-COPYME-run_tmbed/ai/conda_environment.yml#L57
57:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_families/gene_family_COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L69
69:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L68
68:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L67
67:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L66
66:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/research_notebook/research_ai/subproject-genomesDB/ncbi_genomes-gigantic_T1_toolkit/toolkit-COPYME-ncbi_genomes_T1/START_HERE-user_config.yaml#L72
72:15 [colons] too many spaces after colon
Validate shell scripts
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate Python syntax
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-python@v5. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/