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server: add TSV/CSV -> Excel conversion (EXCEL button + standalone do… #133

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server: add TSV/CSV -> Excel conversion (EXCEL button + standalone do…

server: add TSV/CSV -> Excel conversion (EXCEL button + standalone do… #133

Triggered via push June 28, 2026 21:29
@000specific000specific
pushed 1e795b9
main
Status Failure
Total duration 26s
Artifacts –

ci.yml

on: push
Validate YAML files
18s
Validate YAML files
Validate Python syntax
23s
Validate Python syntax
Validate shell scripts
19s
Validate shell scripts
Check project structure
4s
Check project structure
Check documentation
6s
Check documentation
Test demo (placeholder)
5s
Test demo (placeholder)
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2 errors and 16 warnings
Check project structure
Process completed with exit code 1.
Validate YAML files: ./gigantic_project-COPYME/subprojects/orthogroups/BLOCK_orthofinder/workflow-COPYME-run_orthofinder/START_HERE-user_config.yaml#L49
49:1 [key-duplicates] duplication of key "cpus" in mapping
Check project structure
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Test demo (placeholder)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Check documentation
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_groups/gene_groups_hgnc-COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_groups/gene_groups-COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/annotations_hmms/BLOCK_metapredict/workflow-COPYME-run_metapredict/ai/conda_environment.yml#L43
43:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/annotations_hmms/BLOCK_tmbed/workflow-COPYME-run_tmbed/ai/conda_environment.yml#L57
57:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_families/gene_family_COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L102
102:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L101
101:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L100
100:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L99
99:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/research_notebook/research_ai/subproject-genomesDB/ncbi_genomes-gigantic_T1_toolkit/toolkit-COPYME-ncbi_genomes_T1/START_HERE-user_config.yaml#L72
72:15 [colons] too many spaces after colon
Validate shell scripts
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate Python syntax
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-python@v5. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/