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sequence_groups_X_species: add annogroups + gene_families producer ad… #140

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sequence_groups_X_species: add annogroups + gene_families producer ad…

sequence_groups_X_species: add annogroups + gene_families producer ad… #140

Triggered via push June 29, 2026 05:13
@000specific000specific
pushed cd30b65
main
Status Failure
Total duration 29s
Artifacts –

ci.yml

on: push
Validate YAML files
16s
Validate YAML files
Validate Python syntax
26s
Validate Python syntax
Validate shell scripts
19s
Validate shell scripts
Check project structure
7s
Check project structure
Check documentation
4s
Check documentation
Test demo (placeholder)
5s
Test demo (placeholder)
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2 errors and 16 warnings
Check project structure
Process completed with exit code 1.
Validate YAML files: ./gigantic_project-COPYME/subprojects/orthogroups/BLOCK_orthofinder/workflow-COPYME-run_orthofinder/START_HERE-user_config.yaml#L49
49:1 [key-duplicates] duplication of key "cpus" in mapping
Check documentation
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Test demo (placeholder)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Check project structure
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_families/gene_family_COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/sequence_groups_X_species/BLOCK_resolve_groups/workflow-COPYME-resolve_groups/START_HERE-user_config.yaml#L87
87:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/sequence_groups_X_species/BLOCK_resolve_groups/workflow-COPYME-resolve_groups/START_HERE-user_config.yaml#L86
86:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/sequence_groups_X_species/BLOCK_resolve_groups/workflow-COPYME-resolve_groups/START_HERE-user_config.yaml#L85
85:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/sequence_groups_X_species/BLOCK_resolve_groups/workflow-COPYME-resolve_groups/START_HERE-user_config.yaml#L84
84:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L103
103:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L102
102:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L101
101:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L100
100:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/research_notebook/research_ai/subproject-genomesDB/ncbi_genomes-gigantic_T1_toolkit/toolkit-COPYME-ncbi_genomes_T1/START_HERE-user_config.yaml#L72
72:15 [colons] too many spaces after colon
Validate shell scripts
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate Python syntax
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-python@v5. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/