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integrator orthogroups: add Annogroups_Pfam/GO/PANTHER columns to all… #145

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integrator orthogroups: add Annogroups_Pfam/GO/PANTHER columns to all…

integrator orthogroups: add Annogroups_Pfam/GO/PANTHER columns to all… #145

Triggered via push July 11, 2026 18:27
@000specific000specific
pushed 157d1ef
main
Status Failure
Total duration 31s
Artifacts –

ci.yml

on: push
Validate YAML files
19s
Validate YAML files
Validate Python syntax
29s
Validate Python syntax
Validate shell scripts
18s
Validate shell scripts
Check project structure
5s
Check project structure
Check documentation
6s
Check documentation
Test demo (placeholder)
7s
Test demo (placeholder)
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2 errors and 16 warnings
Check project structure
Process completed with exit code 1.
Validate YAML files: ./gigantic_project-COPYME/subprojects/orthogroups/BLOCK_orthofinder/workflow-COPYME-run_orthofinder/START_HERE-user_config.yaml#L49
49:1 [key-duplicates] duplication of key "cpus" in mapping
Check project structure
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Check documentation
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Test demo (placeholder)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate shell scripts
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Validate YAML files: ./gigantic_project-COPYME/subprojects/trees_gene_families/gene_family_COPYME/STEP_3-tree_visualization/workflow-COPYME-tree_visualization/ai/conda_environment.yml#L41
41:5 [indentation] wrong indentation: expected 6 but found 4
Validate YAML files: ./gigantic_project-COPYME/subprojects/sequence_groups_X_species/BLOCK_resolve_groups/workflow-COPYME-resolve_groups/START_HERE-user_config.yaml#L154
154:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/sequence_groups_X_species/BLOCK_resolve_groups/workflow-COPYME-resolve_groups/START_HERE-user_config.yaml#L153
153:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/sequence_groups_X_species/BLOCK_resolve_groups/workflow-COPYME-resolve_groups/START_HERE-user_config.yaml#L152
152:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/sequence_groups_X_species/BLOCK_resolve_groups/workflow-COPYME-resolve_groups/START_HERE-user_config.yaml#L151
151:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L103
103:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L102
102:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L101
101:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/subprojects/annogroups/BLOCK_build_annogroups/workflow-COPYME-build_annogroups/START_HERE-user_config.yaml#L100
100:28 [commas] too many spaces after comma
Validate YAML files: ./gigantic_project-COPYME/research_notebook/research_ai/subproject-genomesDB/ncbi_genomes-gigantic_T1_toolkit/toolkit-COPYME-ncbi_genomes_T1/START_HERE-user_config.yaml#L72
72:15 [colons] too many spaces after colon
Validate Python syntax
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, actions/setup-python@v5. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/