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server: add secretome to subproject_order + populate real SLURM account/qos
Two config changes for the GIGANTIC data server: 1. subproject_order: insert `secretome` between `orthogroups_X_ocl` and `trees_gene_families` (alphabetical). Without this entry, the server's explicit allowlist skips secretome/upload_to_server/ even though the 71 symlinks exist there from commit c3616bb. 2. slurm.account + slurm.qos: replace the placeholder strings ("your_account" / "your_qos") with the real values used on this HPC ("moroz" / "moroz"). The previous placeholder values would have failed at sbatch submit if the YAML had ever been consulted; they weren't consulted because the previous running server (job 33088764) was launched via the now-deleted RUN-start_server.sbatch wrapper. Moved the "REQUIRED for slurm mode" commentary above the keys instead of inline because the script's bash YAML reader doesn't strip inline '#' comments and would otherwise capture them into the value. Verified end-to-end: server restarted as SLURM job 33259899 on node c0706a-s27, port 9456. Eric confirmed the secretome card now appears on the landing page and individual species TSVs (e.g. Beroe ovata) render correctly. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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gigantic_project-COPYME/server/START_HERE-server_config.yaml

Lines changed: 6 additions & 2 deletions
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@@ -61,6 +61,7 @@ subproject_order:
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- homolog_counts
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- hotspots
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- orthogroups_X_ocl
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- secretome
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- trees_gene_families
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- trees_gene_groups
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- trees_species
@@ -116,8 +117,11 @@ exclude_file_patterns:
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# file directly.
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slurm:
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account: "your_account" # REQUIRED for slurm mode — your HPC account
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qos: "your_qos" # REQUIRED for slurm mode — your HPC qos
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# REQUIRED for slurm mode: account + qos. Inline comments on these
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# values get included in the value by the bash YAML reader, so keep
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# commentary on its own lines (or above the keys).
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account: "moroz"
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qos: "moroz"
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partition: "hpg-default"
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time_hours: 720
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memory_gb: 4

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