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secretome: rename STEP_1 build_evidence_table workflow files
Co-authored-by: Cursor <cursoragent@cursor.com>
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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/AI_GUIDE.md renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/AI_GUIDE.md

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/INPUT_user/.gitkeep renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/INPUT_user/.gitkeep

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/INPUT_user/proteome_manifest.tsv renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/INPUT_user/proteome_manifest.tsv

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/README.md renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/README.md

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/RUN-workflow.sh renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/RUN-workflow.sh

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/START_HERE-user_config.yaml renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/START_HERE-user_config.yaml

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/ai/AI_GUIDE.md renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/ai/AI_GUIDE.md

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/ai/conda_environment.yml renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/ai/conda_environment.yml

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/ai/logs/.gitkeep renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/ai/logs/.gitkeep

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gigantic_project-COPYME/subprojects/secretome/BLOCK_secretome_evidence_table/workflow-COPYME-build_evidence_table/ai/main.nf renamed to gigantic_project-COPYME/subprojects/secretome/STEP_1-build_evidence_table/workflow-COPYME-build_evidence_table/ai/main.nf

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