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note: ad2c9cc bundled an unintended payload
Commit ad2c9cc carries the title "trees_gene_groups STEP_2: embed RUN_TAG in SLURM JobName for tier distinguishability" but the diff also includes 14 file renames and 1 deletion in gigantic_project-COPYME/subprojects/ annotations_hmms/ that a parallel session had staged before I committed. The actual STEP_2 change is the two RUN-workflow.sh edits in gene_groups-COPYME/ and gene_groups_hgnc-COPYME/; the annotations_hmms renames normalize AI_GUIDE-<name>.md filenames to AI_GUIDE.md across the six BLOCK_* subtrees plus their per-workflow ai/ dirs. Neither set of changes is destructive; the commit message is just incomplete. I should have run `git diff --cached --stat` to verify the staged set before committing. Recording this here so future readers (and future me) can find the two payloads from the commit title. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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