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Fix off by one bug when converting BAM files to d4 files. (#97) #173

Fix off by one bug when converting BAM files to d4 files. (#97)

Fix off by one bug when converting BAM files to d4 files. (#97) #173

Triggered via push February 4, 2025 22:04
Status Success
Total duration 2m 49s
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push-check.yml

on: push
Matrix: build
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34 warnings
build (ubuntu-latest)
virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
build (ubuntu-latest)
/home/runner/work/d4-format/d4-format/d4tools/Cargo.toml: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition
build (ubuntu-latest): d4-hts/src/alignment/htslib.rs#L10
unexpected `cfg` condition name: `no_bam_hdr_destroy`
build (ubuntu-latest)
`d4-hts` (lib) generated 1 warning
build (ubuntu-latest)
`d4` (lib) generated 1 warning
build (ubuntu-latest): d4tools/src/stat/main.rs#L264
value assigned to `print_header` is never read
build (ubuntu-latest)
`d4tools` (bin "d4tools") generated 1 warning
build (ubuntu-latest)
virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
build (ubuntu-latest)
/home/runner/work/d4-format/d4-format/d4tools/Cargo.toml: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition
build (ubuntu-latest): d4-hts/src/alignment/htslib.rs#L10
unexpected `cfg` condition name: `no_bam_hdr_destroy`
build (ubuntu-latest)
`d4-hts` (lib) generated 1 warning
build (ubuntu-latest)
`d4` (lib) generated 1 warning
build (ubuntu-latest)
`d4tools` (bin "d4tools") generated 1 warning
build (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build (macos-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build (macos-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build (macos-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build (macos-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build (macos-latest)
virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
build (macos-latest)
/Users/runner/work/d4-format/d4-format/d4tools/Cargo.toml: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition
build (macos-latest): d4-hts/src/alignment/htslib.rs#L10
unexpected `cfg` condition name: `no_bam_hdr_destroy`
build (macos-latest)
`d4-hts` (lib) generated 1 warning
build (macos-latest)
`d4` (lib) generated 1 warning
build (macos-latest): d4tools/src/stat/main.rs#L264
value assigned to `print_header` is never read
build (macos-latest)
`d4tools` (bin "d4tools") generated 1 warning
build (macos-latest)
virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
build (macos-latest)
/Users/runner/work/d4-format/d4-format/d4tools/Cargo.toml: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition
build (macos-latest): d4-hts/src/alignment/htslib.rs#L10
unexpected `cfg` condition name: `no_bam_hdr_destroy`
build (macos-latest)
`d4-hts` (lib) generated 1 warning
build (macos-latest)
`d4` (lib) generated 1 warning
build (macos-latest)
`d4tools` (bin "d4tools") generated 1 warning