refactor: run pipeline within analysis notebook #103

	name: CI

	on:
	push:

	jobs:
	build-and-test:
	name: Build & Test
	runs-on: ubuntu-latest
	steps:
	- name: Checkout code
	uses: actions/checkout@v7
	with:
	fetch-depth: 0

	- name: Install Python
	uses: actions/setup-python@v6
	with:
	python-version: "3.14"

	- name: Install uv
	uses: astral-sh/setup-uv@v8.2.0

	- name: Install dependencies
	run: uv sync --extra dev

	- name: Ruff check
	run: uvx ruff check vesskel

	- name: Ruff format check
	run: uvx ruff format vesskel --check

	- name: Build
	run: uv build

	- name: Run tests
	run: uv run pytest tests

	- name: Verify version consistency
	run: \|
	uv add PyYAML
	uv run python - <<'PY'
	import tomllib, yaml

	with open("pyproject.toml", "rb") as f:
	pkg_version = tomllib.load(f)["project"]["version"]
	with open("vesskel/napari.yaml") as f:
	manifest_version = yaml.safe_load(f)["version"]

	if pkg_version != manifest_version:
	raise SystemExit(
	f"Version mismatch: pyproject.toml={pkg_version}, "
	f"napari.yaml={manifest_version}"
	)
	print(f"Versions consistent: {pkg_version}")
	PY

Navigation Menu