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docs: use vectorgraphics for plots and cleanup
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‎.gitignore‎

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# Downloaded benchmark data
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tests/lung_masks/
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*.pdf

‎analysis/HRF_Feature_Analysis.ipynb‎

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"mean_surface_area 4062.285612 "
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"/tmp/ipykernel_729112/1446931430.py:10: FutureWarning: \n",
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"/tmp/ipykernel_97727/1446931430.py:10: FutureWarning: \n",
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"\n",
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"Passing `palette` without assigning `hue` is deprecated and will be removed in v0.14.0. Assign the `x` variable to `hue` and set `legend=False` for the same effect.\n",
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" sns.boxplot(data=analysis_df, x=\"phenotype\", y=feature, ax=ax, palette=\"Set2\")\n",
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"/tmp/ipykernel_729112/1446931430.py:10: FutureWarning: \n",
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"/tmp/ipykernel_97727/1446931430.py:10: FutureWarning: \n",
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"\n",
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"Passing `palette` without assigning `hue` is deprecated and will be removed in v0.14.0. Assign the `x` variable to `hue` and set `legend=False` for the same effect.\n",
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" sns.boxplot(data=analysis_df, x=\"phenotype\", y=feature, ax=ax, palette=\"Set2\")\n",
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"/tmp/ipykernel_729112/1446931430.py:10: FutureWarning: \n",
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"/tmp/ipykernel_97727/1446931430.py:10: FutureWarning: \n",
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"\n",
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"Passing `palette` without assigning `hue` is deprecated and will be removed in v0.14.0. Assign the `x` variable to `hue` and set `legend=False` for the same effect.\n",
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" sns.boxplot(data=analysis_df, x=\"phenotype\", y=feature, ax=ax, palette=\"Set2\")\n",
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"/tmp/ipykernel_97727/1446931430.py:10: FutureWarning: \n",
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"Passing `palette` without assigning `hue` is deprecated and will be removed in v0.14.0. Assign the `x` variable to `hue` and set `legend=False` for the same effect.\n",
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" sns.boxplot(data=analysis_df, x=\"phenotype\", y=feature, ax=ax, palette=\"Set2\")\n",
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"/tmp/ipykernel_97727/1446931430.py:10: FutureWarning: \n",
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"Passing `palette` without assigning `hue` is deprecated and will be removed in v0.14.0. Assign the `x` variable to `hue` and set `legend=False` for the same effect.\n",
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" sns.boxplot(data=analysis_df, x=\"phenotype\", y=feature, ax=ax, palette=\"Set2\")\n",
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"/tmp/ipykernel_97727/1446931430.py:10: FutureWarning: \n",
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"Passing `palette` without assigning `hue` is deprecated and will be removed in v0.14.0. Assign the `x` variable to `hue` and set `legend=False` for the same effect.\n",
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" sns.boxplot(data=analysis_df, x=\"phenotype\", y=feature, ax=ax, palette=\"Set2\")\n",
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"/tmp/ipykernel_97727/1446931430.py:10: FutureWarning: \n",
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"Passing `palette` without assigning `hue` is deprecated and will be removed in v0.14.0. Assign the `x` variable to `hue` and set `legend=False` for the same effect.\n",
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" sns.boxplot(data=analysis_df, x=\"phenotype\", y=feature, ax=ax, palette=\"Set2\")\n",
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"/tmp/ipykernel_97727/1446931430.py:10: FutureWarning: \n",
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"Passing `palette` without assigning `hue` is deprecated and will be removed in v0.14.0. Assign the `x` variable to `hue` and set `legend=False` for the same effect.\n",
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},
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"ax.set_title(\"Spearman correlation\")\n",
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"plt.savefig(\"./figures/correlation_heatmap.png\", dpi=300, bbox_inches=\"tight\")\n",
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"plt.savefig(\"./figures/correlation_heatmap.svg\", bbox_inches=\"tight\")\n",
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"35 std_diameter mean_segment_volume 0.809091"
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"plt.savefig(\"./figures/feature_difference_anova.png\", dpi=300, bbox_inches=\"tight\")\n",
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"plt.savefig(\"./figures/feature_difference_anova.svg\", bbox_inches=\"tight\")\n",
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"display_name": "vesskel (3.14.6)",
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"language": "python",
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‎analysis/HRF_Prediction.ipynb‎

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