Standalone PDB ⇄ token inference scripts

[mahdip72]

@gaozhangyang
Hello
Thank you for developing the FoldToken-open project!

I have forked this project and added two lightweight new scripts:

• foldtoken/pdb_to_token.py
• foldtoken/token_to_pdb.py

Apart from simpler I/O and no batching, they follow the logic in your original reconstruct.py.

Could you please confirm whether these minimal pipelines are technically correct for converting PDBs to VQ-VAE IDs and vice versa, or point out any steps I should adjust?

Thanks

[mahdip72]

Hey @gaozhangyang,
Just bumping this! I'd be super grateful if you could review the pdb_to_token.py and token_to_pdb.py scripts I added to my fork. Any tips or confirmation on their PDB ↔ VQ-VAE ID conversion would help a ton with my research.

Thanks!