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docs/index.md

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# Releases
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# Collection News
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## Curator's Latest Update
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- 10/6/2020: A small, but important release today. Brain coverage quality control scores for the `derivatives.func.runs_task-(MID|nback|rest|SST)_volume` data subsets.
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- 10/7/2020: An important release today to assist investigators with quality control (QC): Brain coverage quality control scores for the `derivatives.func.runs_task-(MID|nback|rest|SST)_volume` data subsets. Remember to QC your data from the release with the [ExecutiveSummary visual report files (see Pipeline stage 7)](https://collection3165.readthedocs.io/en/stable/pipeline/#stage-7-executivesummary), available in the `derivatives.executivesummary.all` data subset.
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## Release 1.1.1
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## Latest Release: Release 1.1.1
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Released 10/6/2020, this is a small version 1.0.0 release of the `derivatives_qc.(json|tsv)` with BIDS derivatives quality control data including a "brain coverage score" for the `derivatives.func.runs_task-(MID|nback|rest|SST)_volume` data subsets.
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Released 10/7/2020, this is a small version 1.0.0 release of the `derivatives_qc.(json|tsv)` with additional BIDS derivatives quality control data including a "brain coverage score" for the `derivatives.func.runs_task-(MID|nback|rest|SST)_volume` data subsets.
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**Note**: We only uploaded runs 1 and 2 of the `derivatives.func.runs_task-(MID|nback|rest|SST)_volume` data subsets in Release 1.1.0. We are uploading resting state fMRI tasks with 3 or more runs to the NDA now and we will post a data set Release 1.1.2 here soon. We will also update the above `derivatives_qc.(json|tsv)` file as a version 1.0.1 after data are uploaded to include `task-rest` volume runs 3 and up.
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## Coming Soon: Release 1.1.2
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## Release 1.1.0
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Additional minimally pre-processed runs for the `task-rest` volumes and their QC scores:
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Released 7/27/2020, this is the next big release with the addition of:
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1. `participants.(json|tsv)` version 1.0.0: BIDS standard participants files with matched groups
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1. `sourcedata.func.task_events`: Task-based fMRI E-Prime files
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1. `inputs.dwi.dwi`: DWI BIDS input data
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1. `derivatives.anat.stats`: FreeSurfer stats files
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1. `derivatives.anat.(T1w|T2w)`: T1 and T2 volumes
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1. `derivatives.anat.wmparc`: white-matter volume ROIs
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1. `derivatives.func.updated_motion_task-(MID|nback|SST|rest)`: Improved motion files (including outlier calculation)
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1. `derivatives.func.pconns`: Curated parcellated connectivity files
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1. `derivatives.func.runs_task-(MID|nback|SST|rest)_volume`: Minimally-processed fMRI volumes
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## Release 1.0.0
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Released 2/17/2020, this is the initial release of DCAN Labs ABCD-BIDS inputs and derivatives containing **10,038 MRI sessions worth of NDA imagingcollection01 data** and **9,647 MRI sessions worth of NDA fmriresults01 data**.
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## Coming Soon
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### Release 1.1.2
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- `derivatives_qc.(json|tsv)` version 1.0.1, including `task-rest` runs 3 and up
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- `derivatives.func.runs_task-rest_volume` data subset runs 3 and up
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- `derivatives.func.runs_task-rest_volume` data subset all runs
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- `derivatives_qc.(json|tsv)` version 1.0.1, including all `task-rest` runs
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## Documentation Guide
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docs/release_notes.md

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- [NDA Collection 3165 documentation repository](https://github.com/ABCD-STUDY/nda-abcd-collection-3165)
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- [Direct link to repository's GitHub issues for requests and feedback](https://github.com/ABCD-STUDY/nda-abcd-collection-3165/issues)
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## 4. Corrections
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## 4. Release History
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This sub-section is for describing errors which have occurred between releases.
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### Release 1.0.0 (2/17/2020)
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This was the initial release of DCAN Labs ABCD-BIDS inputs and derivatives containing **10,038 MRI sessions worth of NDA imagingcollection01 data** and **9,647 MRI sessions worth of NDA fmriresults01 data**.
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### Release 1.1.0 (7/27/2020)
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This was the next big release with the addition of:
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1. `participants.(json|tsv)` version 1.0.0: BIDS standard participants files with matched groups
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1. `sourcedata.func.task_events`: Task-based fMRI E-Prime files
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1. `inputs.dwi.dwi`: DWI BIDS input data
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1. `derivatives.anat.stats`: FreeSurfer stats files
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1. `derivatives.anat.(T1w|T2w)`: T1 and T2 volumes
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1. `derivatives.anat.wmparc`: white-matter volume ROIs
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1. `derivatives.func.updated_motion_task-(MID|nback|SST|rest)`: Improved motion files (including outlier calculation)
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1. `derivatives.func.pconns`: Curated parcellated connectivity files
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1. `derivatives.func.runs_task-(MID|nback|SST|rest)_volume`: Minimally-processed fMRI volumes
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### Release 1.1.1 (10/7/2020)
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This was a small version 1.0.0 release of the `derivatives_qc.(json|tsv)` with additional BIDS derivatives quality control data including a "brain coverage score" for the `derivatives.func.runs_task-(MID|nback|rest|SST)_volume` data subsets.
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## 5. Corrections
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This sub-section is for describing errors which have occurred over time.
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### `task-rest_bold.json`
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Discovered in the middle of June 2020, the modality-specific BIDS inherited `task-rest_bold.json` file at the top of the directory tree which is nested in almost every `task-rest` associated record in the NDA database has a typo in it. The `"TaskDescription"` key has a value of `"See http://www.cognitiveatlas.org/task/id/tsk_4a57abb949e1a/"`. However, this link goes to the stop signal task page on the Cognitive Atlas website. Instead you should refer to [the Cognitive Atlas website for "rest eyes open"](http://www.cognitiveatlas.org/task/id/trm_4c8a834779883/). This site describes the task as:
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> Subjects rest passively with their eyes open. Often used as a baseline for comparison for other tasks.
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### `derivatives.func.runs_task-rest_volume`
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This data subset was originally uploaded in Release 1.1.0, but was missing all runs chronologically numbered 3 and up. We are uploading these missing data in Release 1.1.2.

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