On branch 25km-iaf-test-for-AK-expt-7df5ef4c, I have tried running mkfigs.sh and many of the notebooks do not work (generally due to being written for the RYF run).

Here is the current list

array=( 00_template_notebook Bottom_age_tracer_in_ACCESS_OM3 DrakePassageTransport GlobalTimeseries MLD MLD_max Overturning_in_ACCESS_OM3 SSS SST StraitTransports salt-vs-depth-time temp-vs-depth-time timeseries MeridionalHeatTransport pPV )

Here is the status of each of these notebooks:

• 00_template_notebook_rendered.ipynb

  • Error: ValueError: The input coordinate is not sorted in increasing order along axis 0. This can lead to unexpected results. Consider calling the sortbymethod on the input DataArray. To plot data with categorical axes, consider using theheatmapfunction from theseaborn statistical plotting library.

• Bottom_age_tracer_in_ACCESS_OM3_rendered.ipynb

  • KeyError: -90

• DrakePassageTransport_rendered.ipynb

  • 'ValueError: The input coordinate is not sorted in increasing order along axis 0. This can lead to unexpected results. Consider calling the sortby method on the input DataArray. To plot data with categorical axes, consider using the heatmap function from the seaborn statistical plotting library.'

• GlobalTimeseries_rendered.ipynb

  • TypeError: tz must be string or tzinfo subclass, not ('noleap', 'days since 2000-01-01', <class 'cftime._cftime.DatetimeNoLeap'>).

• MeridionalHeatTransport_rendered.ipynb

  • 'ESMDataSourceError: Failed to load dataset with key='ocean.1mon.nv:2.xt_ocean:3600.yu_ocean:2700'
    You can use cat['ocean.1mon.nv:2.xt_ocean:3600.yu_ocean:2700'].df to inspect the assets/files for this key.'

• MLD_max_rendered.ipynb

  • KeyError Traceback (most recent call last) File /g/data/xp65/public/apps/med_conda/envs/analysis3-25.09/lib/python3.11/site-packages/xarray/backends/file_manager.py:211, in CachingFileManager._acquire_with_cache_info(self, needs_lock)

• MLD_rendered.ipynb

  • FileNotFoundError: [Errno 2] No such file or directory: '/g/data/av17/access-nri-temporary/OM3/MLD-DeBoyerMontegut2023/mld_dr003_ref10m_v2023.nc'

• Overturning_in_ACCESS_OM3_rendered.ipynb WORKS!

• pPV_rendered.ipynb WORKS!

• salt-vs-depth-time_rendered.ipynb WORKS!

• SSS_rendered.ipynb WORKS!

• SST_rendered.ipynb WORKS!

• StraitTransports_rendered.ipynb WORKS!

• temp-vs-depth-time_rendered.ipynb WORKS!

• timeseries_rendered.ipynb

  • ValueError: Found two coordinates without c_grid_axis_shift attribute for axis Y

To see the errors in detail, one can look at the rendered version of the notebooks here:
https://github.com/ACCESS-Community-Hub/access-om3-paper-1/tree/25km-iaf-test-for-AK-expt-7df5ef4c/notebooks/mkfigs_output4

NB: some of the notebooks are "failing" but they produce helpful figures before that.

Related:
#65