added pyproject.toml setup

Author: ccosmin97

pyproject.toml

@@ -0,0 +1,45 @@
+[build-system]
+requires = ["setuptools>=45", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "heartSegClinic"
+version = "0.0.1"
+description = "See Readme.md on github for more details."
+readme = "README.md"
+requires-python = ">=3.8,<3.11"
+license = { text = "CC BY-NC 4.0" }
+authors = [
+    { name = "Cosmin Ciausu", email = "cciausu@bwh.harvard.edu" }
+]
+dependencies = [
+    "setuptools>=45",
+    "importlib_resources>=5.1",
+    "dicom2nifti==2.5.0",
+    "joblib==1.4.2",
+    "numpy==1.24.3",
+    "pydicom==2.4.4",
+    "pynrrd==1.1.1",
+    "pyplastimatch==0.4.6",
+    "rt_utils==1.2.7",
+    "SimpleITK==2.4.0",
+    "tensorflow==2.10.0",
+    "tensorflow-estimator==2.10.0",
+    "tqdm",
+    "pandas; python_version == '3.8'",
+    "pandas; python_version == '3.9'",
+    "pandas==2.3.1; python_version == '3.10'",
+    "scipy==1.10.1; python_version in '3.8, 3.9'",
+    "scipy==1.14.1; python_version == '3.10'",
+    "scikit-image==0.21.0; python_version in '3.8, 3.9'",
+    "scikit-image==0.24.0; python_version == '3.10'",
+    "tensorflow-io-gcs-filesystem==0.34.0; python_version in '3.8, 3.9'",
+    "tensorflow-io-gcs-filesystem==0.37.1; python_version == '3.10'",
+    "python-gdcm==3.0.24.1; python_version in '3.8, 3.9'"
+]
+
+[project.urls]
+Homepage = "https://github.com/??/??"
+
+[project.scripts]
+heartSegClinic = "heartSegClinic.cli.heartSegClinic:main"

requirements/requirements_310.txt

@@ -12,15 +12,3 @@ scikit-image==0.24.0
 tensorflow==2.10.0
 tensorflow-estimator==2.10.0
 tensorflow-io-gcs-filesystem==0.37.1
-#nvidia-cublas-cu12==12.4.5.8
-#nvidia-cuda-cupti-cu12==12.4.127
-#nvidia-cuda-nvrtc-cu12==12.4.127
-#nvidia-cuda-runtime-cu12==12.4.127
-#nvidia-cudnn-cu12==9.1.0.70
-#nvidia-cufft-cu12==11.2.1.3
-#nvidia-curand-cu12==10.3.5.147
-#nvidia-cusolver-cu12==11.6.1.9
-#nvidia-cusparse-cu12==12.3.1.170
-#nvidia-nccl-cu12==2.21.5
-#nvidia-nvjitlink-cu12==12.4.127
-#nvidia-nvtx-cu12==12.4.127

requirements/requirements_38.txt

@@ -12,16 +12,4 @@ tensorflow-estimator==2.10.0
 tensorflow-io-gcs-filesystem==0.34.0
 python-gdcm==3.0.24.1
 SimpleITK==2.4.0
-#nvidia-cublas-cu12
-#nvidia-cuda-cupti-cu12
-#nvidia-cuda-nvrtc-cu12
-#nvidia-cuda-runtime-cu12
-#nvidia-cudnn-cu12
-#nvidia-cufft-cu12
-#nvidia-curand-cu12
-#nvidia-cusolver-cu12
-#nvidia-cusparse-cu12
-#nvidia-nccl-cu12
-#nvidia-nvjitlink-cu12
-#nvidia-nvtx-cu12
 pandas

setup.cfg

@@ -0,0 +1,31 @@
+[metadata]
+name = heartSegClinic
+version = 0.0.1
+description = See Readme.md on github for more details.
+long_description = file: README.md
+long_description_content_type = text/markdown
+license = CC BY-NC 4.0
+author = Cosmin Ciausu
+author_email = cciausu@bwh.harvard.edu
+url = https://github.com/??/??
+classifiers =
+    Intended Audience :: Science/Research
+    Programming Language :: Python
+    Topic :: Scientific/Engineering
+    Operating System :: Unix
+
+[options]
+packages = find:
+python_requires = >=3.8,<3.11
+include_package_data = True
+zip_safe = False
+
+[options.package_data]
+heartSegClinic =
+    data/*
+    data/labels/*
+    data/models/*
+
+[options.entry_points]
+console_scripts =
+    heartSegClinic = heartSegClinic.cli.heartSegClinic:main