pyproject.toml

[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "bids-manager"
version = "1.2.5.2"
description = "Schema-driven BIDS converter, curator, and editor (re-imagination of BIDS-Manager v0.2.5)"
readme = "README.md"
license = "MIT"
license-files = ["LICENSE"]
authors = [
    {name = "Karel Lopez Vilaret", email = "karel.mauricio.lopez.vilaret@uni-oldenburg.de"},
    {name = "Karel Lopez Vilaret"},
    {name = "Jochem Rieger"},
]
maintainers = [
    {name = "ANCP Lab, University of Oldenburg", email = "karel.mauricio.lopez.vilaret@uni-oldenburg.de"},
]
keywords = ["BIDS", "DICOM", "EEG", "MEG", "GUI", "Neuroimaging"]
requires-python = ">=3.10,<3.15"
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Environment :: Console",
    "Environment :: X11 Applications :: Qt",
    "Intended Audience :: Science/Research",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
]

# Core dependencies.
# Bounds strategy:
#   lower bound  = oldest version that works with any supported Python (3.10+).
#   upper bound  = latest version tested in the reference env (Python 3.10 venv
#                  with pandas-3 strict-string-dtype simulated via
#                  pd.options.future.infer_string; Python 3.14 venv tested
#                  separately by the user).
# On older Pythons pip picks the newest release that fits both the version
# range AND that Python's compatibility.
dependencies = [
    # Schema engine. The keystone of the architecture.
    "bidsschematools>=1.0,<=1.2.2",
    "ancpbids>=0.3,<=0.3.1",

    # BIDS validation engine. The Editor validator + ``bidsmgr-validate`` delegate
    # to bidsval (schema-driven, pydantic-typed, false-positive-verified against
    # the reference validator). It pulls only deps BIDS Manager already ships
    # (bidsschematools, pydantic, nibabel, pandas, mne), so the footprint barely
    # changes. 0.0.x is pre-1.0; allow patch releases, not a 0.1 minor bump.
    "bidsval>=0.0.2,<0.1.0",

    # GUI.
    "pyqt6>=6.5,<=6.11.0",

    # Strongly-typed core abstractions.
    "pydantic>=2.6,<=2.13.4",

    # MRI conversion stack. dcm2niix invoked directly.
    "dcm2niix>=1.0.20240202,<=1.0.20260416",
    "pydicom>=2.4,<=3.0.2",
    "nibabel>=5.0,<=5.4.2",

    # EEG / MEG / iEEG conversion stack.
    "mne>=1.6,<=1.12.1",
    "mne-bids>=0.15,<=0.17.0",
    "edfio>=0.3,<=0.4.13",

    # Physio (Siemens PhysioLog DICOM to BIDS): vendored at
    # ``bidsmgr.vendor.bidsphysio`` (MIT, see that subdir's LICENSE).
    # No transitive setuptools cap required as a result.

    # Data handling.
    "pandas>=2.0,<3.0",
    "numpy>=1.26,<3.0",
    "joblib>=1.3,<=1.5.3",

    # System info (CPU thread count, total RAM) shown in Settings and used
    # to cap the parallel-workers spinboxes. Already pulled in transitively
    # by joblib/loky; declared explicitly so the cap never silently breaks.
    "psutil>=5.9,<=7.0.0",

    # Editor viewer (NIfTI slices + MEG/EEG time-series + PSD, all
    # rendered in-app with pyqtgraph - no matplotlib dependency).
    "pyqtgraph>=0.13,<=0.14.0",
    "PyOpenGL>=3.1,<=3.1.10",

    # GUI icons. Ships its own MDI6 / Font Awesome / Phosphor TTFs so
    # toolbar / tab / chip glyphs render identically on macOS, Linux,
    # and Windows instead of falling back to per-OS emoji fonts.
    "qtawesome>=1.3,<=1.4.2",
]

[project.optional-dependencies]
dev = [
    "pytest>=8.0",
    "pytest-qt>=4.4",
    "ruff>=0.4",
    "build>=1.0",
    "twine>=4.0",
]

[project.urls]
Homepage      = "https://github.com/ANCPLabOldenburg/BIDS-Manager"
Repository    = "https://github.com/ANCPLabOldenburg/BIDS-Manager"
Documentation = "https://ancplaboldenburg.github.io/bids_manager_documentation/"
Tracker       = "https://github.com/ANCPLabOldenburg/BIDS-Manager/issues"

# Console entry points. All routed through the ``bidsmgr`` package.
# The PyPI distribution is ``bids-manager`` but the import name is
# ``bidsmgr`` (same pattern as ``pip install scikit-learn`` then
# ``import sklearn``).
[project.scripts]
bidsmgr           = "bidsmgr.main:main"
bidsmgr-create    = "bidsmgr.cli.create:main"
bidsmgr-project   = "bidsmgr.cli.project:main"
bidsmgr-scan      = "bidsmgr.cli.scan:main"
bidsmgr-convert   = "bidsmgr.cli.convert:main"
bidsmgr-rebuild   = "bidsmgr.cli.rebuild:main"
bidsmgr-metadata  = "bidsmgr.cli.metadata:main"
bidsmgr-validate  = "bidsmgr.cli.validate:main"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
include = ["bidsmgr*"]

[tool.setuptools.package-data]
"bidsmgr.gui"               = [
    "*.qss",
    "assets/*.png",
    "assets/*.jpg",
    "assets/*.jpeg",
    "assets/macos/*.png",
    "assets/macos/*.icns",
    "assets/windows/*.ico",
]
"bidsmgr.schema"            = ["bundled/**/*"]
"bidsmgr.vendor"            = ["README.md"]
"bidsmgr.vendor.bidsphysio" = ["LICENSE"]

[tool.pytest.ini_options]
pythonpath = ["."]
testpaths = ["tests"]
markers = [
    "real_data: requires real datasets at /Users/karelo/Development/datasets/BIDS_Manager/raw_data, gated on env vars BIDS_MANAGER_REAL_{MRI,MEG,EEG}_DATA",
    "gui: pytest-qt smoke tests, headless OK with QT_QPA_PLATFORM=offscreen",
]