Modify the cmake to make it install package automatically.

Aaron-Hsieh-0129 · Aaron-Hsieh-0129 · commit 650aa2b52a03 · 2025-04-19T13:51:58.000+08:00
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -1,5 +1,10 @@
 cmake_minimum_required(VERSION 3.10)
 
+# Set policy CMP0135 to NEW to avoid timestamp warnings
+if(POLICY CMP0135)
+    cmake_policy(SET CMP0135 NEW)
+endif()
+
 # Set default build type to Release if not specified
 if(NOT CMAKE_BUILD_TYPE)
     set(CMAKE_BUILD_TYPE Release)
@@ -16,16 +21,11 @@ endif()
 set(GCC_LIB_DIR "${GCC_HOME}/lib64")
 set(GCC_LIB32_DIR "${GCC_HOME}/lib")
 
-# Set GCC compilers (can be overridden by PETSc if enabled)
+# Set GCC compilers
 set(CMAKE_C_COMPILER "${GCC_HOME}/bin/gcc" CACHE STRING "Set C compiler")
 set(CMAKE_CXX_COMPILER "${GCC_HOME}/bin/g++" CACHE STRING "Set C++ compiler")
 set(CMAKE_Fortran_COMPILER "${GCC_HOME}/bin/gfortran" CACHE STRING "Set Fortran compiler")
 
-# Find MPI (uncomment if needed)
-# find_package(MPI REQUIRED)
-# set(CMAKE_C_COMPILER ${MPI_C_COMPILER})
-# set(CMAKE_CXX_COMPILER ${MPI_CXX_COMPILER})
-
 # Find OpenMP
 find_package(OpenMP REQUIRED)
 
@@ -50,13 +50,16 @@ else()
     message(STATUS "Using single core for building")
 endif()
 
+# Limit cores for Boost build to avoid issues
+set(BOOST_BUILD_CORES 16)
+
 # Set compiler flags
-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++17 ${MPI_CXX_COMPILE_FLAGS} -Wall -Wno-unused-function -Wno-unused-variable")
-set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${MPI_C_COMPILE_FLAGS}")
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++17 -Wall -Wno-unused-function")
+set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS}")
 set(CMAKE_CXX_FLAGS_DEBUG "-g")
 set(CMAKE_CXX_FLAGS_RELEASE "-O3")
 set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -cpp -fPIC -fdefault-real-8 -ffree-line-length-0")
-set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${MPI_CXX_LINK_FLAGS}")
+set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS}")
 
 # Add OpenMP flags
 if(OpenMP_CXX_FOUND)
@@ -68,154 +71,74 @@ if(OpenMP_Fortran_FOUND)
 endif()
 
 # Set RPATH usage
+set(CMAKE_INSTALL_RPATH "${DEP_INSTALL_DIR}/lib;${GCC_LIB_DIR};${GCC_LIB32_DIR}")
 set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
 
 add_definitions(-DRTE_USE_CBOOL)
 
-# HDF5
-find_library(HDF5_LIB NAMES hdf5 hdf5_serial HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
-find_library(HDF5_HL_LIB NAMES hdf5_hl HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
-if(NOT HDF5_LIB OR NOT HDF5_HL_LIB)
-    message(STATUS "HDF5 or HDF5 high-level library not found in ${DEP_INSTALL_DIR}, installing...")
-    ExternalProject_Add(
-        hdf5_ext
-        URL            https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.gz
-        PREFIX         ${CMAKE_SOURCE_DIR}/_deps/hdf5
-        CONFIGURE_COMMAND ${CMAKE_COMMAND} -E env
-            CC=${CMAKE_C_COMPILER}
-            CXX=${CMAKE_CXX_COMPILER}
-            <SOURCE_DIR>/configure
-            --prefix=${DEP_INSTALL_DIR}
-            --enable-cxx
-            --enable-hl
-            --disable-shared
-            --enable-static
-            --with-zlib=/usr
-        BUILD_COMMAND  make -j${N_CORES}
-        INSTALL_COMMAND make install
-        UPDATE_COMMAND ""
-        BUILD_IN_SOURCE 1
-        BUILD_ALWAYS   FALSE
-    )
-    set(HDF5_NEEDS_INSTALL TRUE)
-    set(HDF5_LIB ${DEP_INSTALL_DIR}/lib/libhdf5.a)
-    set(HDF5_HL_LIB ${DEP_INSTALL_DIR}/lib/libhdf5_hl.a)
-else()
-    message(STATUS "HDF5 found: ${HDF5_LIB}")
-    message(STATUS "HDF5 high-level library found: ${HDF5_HL_LIB}")
-endif()
-
-# NetCDF-C (depends on HDF5)
-find_library(NETCDF_LIB NAMES netcdf HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
-if(NOT NETCDF_LIB)
-    message(STATUS "NetCDF-C not found in ${DEP_INSTALL_DIR}, installing...")
-    ExternalProject_Add(
-        netcdf-c_ext
-        URL            https://github.com/Unidata/netcdf-c/archive/v4.3.3.1.tar.gz
-        PREFIX         ${CMAKE_SOURCE_DIR}/_deps/netcdf-c
-        CONFIGURE_COMMAND <SOURCE_DIR>/configure
-            --prefix=${DEP_INSTALL_DIR}
-            CC=${CMAKE_C_COMPILER}
-            CXX=${CMAKE_CXX_COMPILER}
-            FC=${CMAKE_Fortran_COMPILER}
-            --disable-dap
-            --disable-byterange
-            --with-hdf5=${DEP_INSTALL_DIR}
-        BUILD_COMMAND  make -j${N_CORES}
-        INSTALL_COMMAND make install
-        DEPENDS        hdf5_ext
-        UPDATE_COMMAND ""
-        BUILD_ALWAYS   FALSE
-    )
-    set(NETCDF_C_NEEDS_INSTALL TRUE)
-    set(NETCDF_LIB ${DEP_INSTALL_DIR}/lib/libnetcdf.a)
-else()
-    message(STATUS "NetCDF-C found in ${DEP_INSTALL_DIR}/lib")
-endif()
-
-# NetCDF-C++ (depends on NetCDF-C and HDF5)
-find_library(NETCDF_CXX_LIB NAMES netcdf_c++4 HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
-if(NOT NETCDF_CXX_LIB)
-    message(STATUS "NetCDF-C++ not found in ${DEP_INSTALL_DIR}, installing...")
-    ExternalProject_Add(
-        netcdf-cxx_ext
-        URL            https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz
-        PREFIX         ${CMAKE_SOURCE_DIR}/_deps/netcdf-cxx
-        CONFIGURE_COMMAND <SOURCE_DIR>/configure
-            --prefix=${DEP_INSTALL_DIR}
-            CC=${CMAKE_C_COMPILER}
-            CXX=${CMAKE_CXX_COMPILER}
-            CPPFLAGS=-I${DEP_INSTALL_DIR}/include
-            LDFLAGS=-L${DEP_INSTALL_DIR}/lib
-        BUILD_COMMAND  make -j${N_CORES}
-        INSTALL_COMMAND make install
-        DEPENDS        netcdf-c_ext hdf5_ext
-        UPDATE_COMMAND ""
-        BUILD_ALWAYS   FALSE
-    )
-    set(NETCDF_CXX_NEEDS_INSTALL TRUE)
-    set(NETCDF_CXX_LIB ${DEP_INSTALL_DIR}/lib/libnetcdf_c++4.a)
-else()
-    message(STATUS "NetCDF-C++ found in ${DEP_INSTALL_DIR}/lib")
-endif()
-
-# Boost
-find_library(BOOST_SYSTEM_LIB NAMES boost_system HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
-find_library(BOOST_FILESYSTEM_LIB NAMES boost_filesystem HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
-if(NOT BOOST_SYSTEM_LIB OR NOT BOOST_FILESYSTEM_LIB)
-    message(STATUS "Boost not found in ${DEP_INSTALL_DIR}, installing...")
-    ExternalProject_Add(
-        boost_ext
-        URL            https://archives.boost.io/release/1.87.0/source/boost_1_87_0.tar.bz2
-        PREFIX         ${CMAKE_SOURCE_DIR}/_deps/boost
-        CONFIGURE_COMMAND <SOURCE_DIR>/bootstrap.sh
-            --prefix=${DEP_INSTALL_DIR}
-            --with-libraries=system,filesystem
-        BUILD_COMMAND  <SOURCE_DIR>/b2
-            -j${N_CORES}
-            install
-            --prefix=${DEP_INSTALL_DIR}
-            link=static
-            threading=multi
-        INSTALL_COMMAND ""
-        UPDATE_COMMAND ""
-        BUILD_IN_SOURCE 1
-        BUILD_ALWAYS   FALSE
-    )
-    set(BOOST_NEEDS_INSTALL TRUE)
-    set(Boost_INCLUDE_DIRS ${DEP_INSTALL_DIR}/include)
-    set(Boost_LIBRARIES ${DEP_INSTALL_DIR}/lib/libboost_system.a ${DEP_INSTALL_DIR}/lib/libboost_filesystem.a)
-else()
-    message(STATUS "Boost found in ${DEP_INSTALL_DIR}/lib")
-    set(Boost_INCLUDE_DIRS ${DEP_INSTALL_DIR}/include)
-    set(Boost_LIBRARIES ${BOOST_SYSTEM_LIB} ${BOOST_FILESYSTEM_LIB})
-endif()
-
-# Find system libraries
-find_library(DL_LIB NAMES dl)
-if(NOT DL_LIB)
-    message(FATAL_ERROR "libdl not found. Please install the dynamic linking library.")
-else()
-    message(STATUS "libdl found: ${DL_LIB}")
-endif()
-
-find_library(Z_LIB NAMES z)
-if(NOT Z_LIB)
-    message(FATAL_ERROR "zlib not found. Please install zlib.")
-else()
-    message(STATUS "zlib found: ${Z_LIB}")
-endif()
-
 # Include directories
 include_directories(
     include
     ${DEP_INSTALL_DIR}/include
-    ${MPI_INCLUDE_PATH}
-    ${Boost_INCLUDE_DIRS}
     ${CMAKE_SOURCE_DIR}/external/rte-rrtmgp-cpp/include
     ${CMAKE_SOURCE_DIR}/external/rte-rrtmgp-cpp/include_test
 )
 
+# ExternalProject for HDF5
+ExternalProject_Add(
+    hdf5_ext
+    URL https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1.tar.gz
+    PREFIX ${CMAKE_SOURCE_DIR}/_deps/hdf5
+    CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-cxx --enable-fortran --enable-shared --with-pic CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} FC=${CMAKE_Fortran_COMPILER}
+    BUILD_COMMAND make -j${N_CORES}
+    INSTALL_COMMAND make install
+    UPDATE_COMMAND ""
+    BUILD_ALWAYS FALSE
+    DOWNLOAD_EXTRACT_TIMESTAMP TRUE
+)
+
+# ExternalProject for NetCDF-C (depends on HDF5)
+ExternalProject_Add(
+    netcdf-c_ext
+    URL https://github.com/Unidata/netcdf-c/archive/v4.3.3.1.tar.gz
+    PREFIX ${CMAKE_SOURCE_DIR}/_deps/netcdf-c
+    CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-netcdf-4 --enable-shared --with-pic --disable-dap CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} FC=${CMAKE_Fortran_COMPILER} CPPFLAGS=-I${DEP_INSTALL_DIR}/include LDFLAGS=-L${DEP_INSTALL_DIR}/lib
+    BUILD_COMMAND make -j${N_CORES}
+    INSTALL_COMMAND make install
+    UPDATE_COMMAND ""
+    BUILD_ALWAYS FALSE
+    DEPENDS hdf5_ext
+    DOWNLOAD_EXTRACT_TIMESTAMP TRUE
+)
+
+# ExternalProject for NetCDF-CXX (depends on NetCDF-C)
+ExternalProject_Add(
+    netcdf-cxx4_ext
+    URL https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz
+    PREFIX ${CMAKE_SOURCE_DIR}/_deps/netcdf-cxx4
+    CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-shared --with-pic CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CPPFLAGS=-I${DEP_INSTALL_DIR}/include LDFLAGS=-L${DEP_INSTALL_DIR}/lib
+    BUILD_COMMAND make -j${N_CORES}
+    INSTALL_COMMAND make install
+    UPDATE_COMMAND ""
+    BUILD_ALWAYS FALSE
+    DEPENDS netcdf-c_ext
+    DOWNLOAD_EXTRACT_TIMESTAMP TRUE
+)
+
+# ExternalProject for Boost
+ExternalProject_Add(
+    boost_ext
+    URL https://archives.boost.io/release/1.87.0/source/boost_1_87_0.tar.gz
+    PREFIX ${CMAKE_SOURCE_DIR}/_deps/boost
+    CONFIGURE_COMMAND <SOURCE_DIR>/bootstrap.sh --prefix=${DEP_INSTALL_DIR}
+    BUILD_COMMAND <SOURCE_DIR>/b2 -j${BOOST_BUILD_CORES} install --prefix=${DEP_INSTALL_DIR}
+    BUILD_IN_SOURCE TRUE
+    INSTALL_COMMAND ""
+    UPDATE_COMMAND ""
+    BUILD_ALWAYS FALSE
+    DOWNLOAD_EXTRACT_TIMESTAMP TRUE
+)
+
 # Add rte-rrtmgp-cpp as a subdirectory
 add_subdirectory(external/rte-rrtmgp-cpp)
 
@@ -241,79 +164,37 @@ add_executable(vvm2d ${SRC})
 # Link Fortran library and runtime to the executable
 target_link_libraries(vvm2d PRIVATE p3 gfortran)
 
-# Link MPI libraries (uncomment if MPI is enabled)
-# target_link_libraries(vvm2d PRIVATE ${MPI_CXX_LIBRARIES})
-
 # Link OpenMP libraries
 if(OpenMP_CXX_FOUND)
     target_link_libraries(vvm2d PRIVATE OpenMP::OpenMP_CXX)
 endif()
 
+# Specify expected library paths (will be built by ExternalProject)
+set(HDF5_LIB ${DEP_INSTALL_DIR}/lib/libhdf5.so)
+set(HDF5_CXX_LIB ${DEP_INSTALL_DIR}/lib/libhdf5_cpp.so)
+set(NETCDF_C_LIB ${DEP_INSTALL_DIR}/lib/libnetcdf.so)
+set(NETCDF_CXX_LIB ${DEP_INSTALL_DIR}/lib/libnetcdf_c++4.so)
+set(BOOST_SYSTEM_LIB ${DEP_INSTALL_DIR}/lib/libboost_system.so)
+set(BOOST_FILESYSTEM_LIB ${DEP_INSTALL_DIR}/lib/libboost_filesystem.so)
+
 # Link libraries
 target_link_libraries(vvm2d PRIVATE
     rte_rrtmgp
-    ${NETCDF_LIB}
-    ${NETCDF_CXX_LIB}
-    ${HDF5_HL_LIB}
     ${HDF5_LIB}
-    ${Boost_LIBRARIES}
-    ${DL_LIB}
-    ${Z_LIB}
+    ${HDF5_CXX_LIB}
+    ${NETCDF_C_LIB}
+    ${NETCDF_CXX_LIB}
+    ${BOOST_SYSTEM_LIB}
+    ${BOOST_FILESYSTEM_LIB}
     stdc++
 )
 
-# Link PETSc if enabled
-option(USE_PETSC "Enable PETSc support" OFF)
-if(USE_PETSC)
-    message(STATUS "PETSc support enabled")
-    find_library(PETSC_LIB NAMES petsc HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
-    if(NOT PETSC_LIB)
-        message(STATUS "PETSc not found in ${DEP_INSTALL_DIR}, installing...")
-        ExternalProject_Add(
-            petsc_ext
-            GIT_REPOSITORY https://gitlab.com/petsc/petsc.git
-            GIT_TAG        v3.20.5
-            GIT_SHALLOW    TRUE
-            PREFIX         ${CMAKE_SOURCE_DIR}/_deps/petsc
-            CONFIGURE_COMMAND <SOURCE_DIR>/configure
-                --prefix=${DEP_INSTALL_DIR}
-                --with-cc=${CMAKE_C_COMPILER}
-                --with-cxx=${CMAKE_CXX_COMPILER}
-                --with-fc=${CMAKE_Fortran_COMPILER}
-                --with-mpi=1
-            BUILD_COMMAND  make -j${N_CORES}
-            INSTALL_COMMAND make install
-            UPDATE_COMMAND ""
-            BUILD_ALWAYS   FALSE
-        )
-        set(PETSC_NEEDS_INSTALL TRUE)
-        set(PETSC_LIB ${DEP_INSTALL_DIR}/lib/libpetsc.so)
-    else()
-        message(STATUS "PETSc found in ${DEP_INSTALL_DIR}/lib")
-    endif()
-    target_link_libraries(vvm2d PRIVATE ${PETSC_LIB})
-endif()
-
-# Add dependencies if needed
-if(HDF5_NEEDS_INSTALL)
-    add_dependencies(vvm2d hdf5_ext)
-endif()
-if(NETCDF_C_NEEDS_INSTALL)
-    add_dependencies(vvm2d netcdf-c_ext)
-endif()
-if(NETCDF_CXX_NEEDS_INSTALL)
-    add_dependencies(vvm2d netcdf-cxx_ext)
-endif()
-if(BOOST_NEEDS_INSTALL)
-    add_dependencies(vvm2d boost_ext)
-endif()
-if(USE_PETSC AND PETSC_NEEDS_INSTALL)
-    add_dependencies(vvm2d petsc_ext)
-endif()
+# Add dependencies
+add_dependencies(vvm2d hdf5_ext netcdf-c_ext netcdf-cxx4_ext boost_ext)
 
 # Set runtime library paths (-rpath)
 set_target_properties(vvm2d PROPERTIES
-    LINK_FLAGS "-Wl,-rpath,${GCC_LIB_DIR} -Wl,-rpath,${GCC_LIB32_DIR} -Wl,-rpath,${DEP_INSTALL_DIR}/lib"
+    LINK_FLAGS "-Wl,-rpath,${DEP_INSTALL_DIR}/lib -Wl,-rpath,${GCC_LIB_DIR} -Wl,-rpath,${GCC_LIB32_DIR}"
 )
 
 # CPack settings
@@ -327,7 +208,6 @@ message(STATUS "  Build type: ${CMAKE_BUILD_TYPE}")
 message(STATUS "  C Compiler: ${CMAKE_C_COMPILER}")
 message(STATUS "  C++ Compiler: ${CMAKE_CXX_COMPILER}")
 message(STATUS "  Fortran Compiler: ${CMAKE_Fortran_COMPILER}")
-message(STATUS "  PETSc support: ${USE_PETSC}")
 message(STATUS "  OpenMP support: ${OpenMP_CXX_FOUND}")
 if(OpenMP_CXX_FOUND)
     message(STATUS "  OpenMP CXX flags: ${OpenMP_CXX_FLAGS}")
