vlpb-assembly-workshop/hat_viz.json at main · AbeelLab/vlpb-assembly-workshop · GitHub

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{
	"version": "2.12.6",
	"showSampleNames": false,
	"reference": {
		"fastaURL": "https://drive.google.com/file/d/1rMXTvIH97nxjy6OxOT-aiW5wGNtUZyaH/view?usp=drive_web",
		"indexURL": "https://drive.google.com/file/d/10HQ2S4BRIFqN4S1iKdKHXNSkyZSH7VDY/view?usp=drive_web"
	},
	"locus": "utg000001l:99,892-101,465",
	"tracks": [
		{
			"type": "sequence",
			"order": -9007199254740991
		},
		{
			"url": "https://drive.google.com/file/d/189cDygmLRHouRP6YKQ-GVT3ylq6BKP36/view?usp=drive_web",
			"name": "scI_hap0_longreads0_aln.sorted.bam",
			"indexURL": "https://drive.google.com/file/d/1v3nqbIr9vKwOT0ep6vLOwE-q2HICHACW/view?usp=drive_web",
			"indexFilename": "scI_hap0_longreads0_aln.sorted.bam.bai",
			"derivedName": true,
			"format": "bam",
			"type": "alignment",
			"alleleFreqThreshold": 0.2,
			"showInsertions": false,
			"order": 4
		},
		{
			"url": "https://drive.google.com/file/d/1nyFSDsaIt6xEBIgckUIhWD0jVzivxEiZ/view?usp=drive_web",
			"name": "scI_hap0_shortreads0_aln.sorted.bam",
			"indexURL": "https://drive.google.com/file/d/15OXYzT8fOs2PQZgVs0YYCcEQWlrS7t3P/view?usp=drive_web",
			"indexFilename": "scI_hap0_shortreads0_aln.sorted.bam.bai",
			"derivedName": true,
			"format": "bam",
			"type": "alignment",
			"alleleFreqThreshold": 0.2,
			"displayMode": "EXPANDED",
			"viewAsPairs": true,
			"showInsertions": false,
			"order": 5
		},
		{
			"url": "https://drive.google.com/file/d/1NJUSgcuNyUlbx5HVCziU2ozoWl8oDFDi/view?usp=drive_web",
			"name": "scI_hap0_shortreads1_aln.sorted.bam",
			"indexURL": "https://drive.google.com/file/d/1SNn_FDH6TxDrX6NiY0WvoBfBk00-hEQ3/view?usp=drive_web",
			"indexFilename": "scI_hap0_shortreads1_aln.sorted.bam.bai",
			"derivedName": true,
			"format": "bam",
			"type": "alignment",
			"alleleFreqThreshold": 0.2,
			"colorBy": "none",
			"showInsertions": false,
			"order": 5
		}
	]
}