relecov-tools/relecov_tools/conf/read_lab_metadata_heading_default.json at 10cadc93b8f167ccf94fb01da9d6863349125561 · Aberdur/relecov-tools · GitHub

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[
  "Organism",
  "Public Health sample id (SIVIRA)",
  "Sample ID given by originating laboratory",
  "Sample ID given by the submitting laboratory",
  "Sample ID given in the microbiology lab",
  "Sample ID given if multiple rna-extraction or passages",
  "Sample ID given for sequencing",
  "ENA Sample ID",
  "GISAID Virus Name",
  "GISAID id",
  "Originating Laboratory",
  "Submitting Institution",
  "Sequencing Institution",
  "Sample Collection Date",
  "Sample Received Date",
  "Purpose of sampling",
  "Biological Sample Storage Condition",
  "Specimen source",
  "Environmental Material",
  "Environmental System",
  "Collection Device",
  "Host",
  "Host Age Years",
  "Host Age Months",
  "Host Gender",
  "Vaccinated",
  "Specific medication for treatment or prophylaxis",
  "Hospitalization",
  "Admission to intensive care unit",
  "Death",
  "Immunosuppression",
  "Sequencing Date",
  "Nucleic acid extraction protocol",
  "Commercial All-in-one library kit",
  "Library Preparation Kit",
  "Enrichment Protocol",
  "If Enrichment Protocol Is Other, Specify",
  "Enrichment panel/assay",
  "If Enrichment panel/assay Is Other, Specify",
  "Enrichment panel/assay version",
  "Number Of Samples In Run",
  "Runid",
  "Sequencing Instrument Model",
  "Flowcell Kit",
  "Source material",
  "Capture method",
  "Sequencing technique",
  "Library Layout",
  "Gene Name 1",
  "Diagnostic Pcr Ct Value 1",
  "Gene Name 2",
  "Diagnostic Pcr Ct Value-2",
  "Authors",
  "Sequence file R1",
  "Sequence file R2"
]