Skip to content

Commit a020aaf

Browse files
thsathsa
committed
re-added temporarily missing classes
1 parent 82e9f5c commit a020aaf

File tree

2 files changed

+214
-0
lines changed

2 files changed

+214
-0
lines changed

‎src/main/java/com/actelion/research/jfx/gui/misc/ClipboardHelper.java‎

Lines changed: 168 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,168 @@
1+
/*
2+
* Copyright (c) 1997 - 2016
3+
* Actelion Pharmaceuticals Ltd.
4+
* Gewerbestrasse 16
5+
* CH-4123 Allschwil, Switzerland
6+
*
7+
* All rights reserved.
8+
*
9+
* Redistribution and use in source and binary forms, with or without
10+
* modification, are permitted provided that the following conditions are met:
11+
*
12+
* 1. Redistributions of source code must retain the above copyright notice, this
13+
* list of conditions and the following disclaimer.
14+
* 2. Redistributions in binary form must reproduce the above copyright notice,
15+
* this list of conditions and the following disclaimer in the documentation
16+
* and/or other materials provided with the distribution.
17+
* 3. Neither the name of the the copyright holder nor the
18+
* names of its contributors may be used to endorse or promote products
19+
* derived from this software without specific prior written permission.
20+
*
21+
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
22+
* ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
23+
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
24+
* DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
25+
* ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
26+
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
27+
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
28+
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
29+
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
30+
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
31+
*
32+
*/
33+
34+
package com.actelion.research.jfx.gui.misc;
35+
36+
import com.actelion.research.chem.*;
37+
import com.actelion.research.jfx.dataformat.MoleculeDataFormats;
38+
import javafx.scene.input.Clipboard;
39+
import javafx.scene.input.ClipboardContent;
40+
import javafx.scene.input.DataFormat;
41+
42+
import java.util.ArrayList;
43+
import java.util.List;
44+
import java.util.Set;
45+
46+
/**
47+
* Created by baerr on 7/28/14.
48+
*/
49+
public class ClipboardHelper {
50+
private ClipboardHelper() {
51+
}
52+
53+
public static ClipboardContent writeContent(StereoMolecule mol) {
54+
return writeContent(mol, null);
55+
}
56+
57+
public static ClipboardContent writeContent(StereoMolecule mol, ClipboardContent content) {
58+
if(content==null)
59+
content = new ClipboardContent();
60+
61+
// JavaFx/awt clipboard
62+
content.put(MoleculeDataFormats.DF_SERIALIZEDMOLECULE, mol);
63+
64+
MolfileV3Creator molfileV3Creator = new MolfileV3Creator(mol);
65+
content.put(MoleculeDataFormats.DF_MDLMOLFILEV3, molfileV3Creator.getMolfile());
66+
67+
MolfileCreator molfileCreator = new MolfileCreator(mol);
68+
content.put(MoleculeDataFormats.DF_MDLMOLFILE, molfileCreator.getMolfile());
69+
70+
Canonizer can = new Canonizer(mol);
71+
String idcode = String.format("%s %s", can.getIDCode(), can.getEncodedCoordinates(true));
72+
content.putString(idcode);
73+
74+
IsomericSmilesCreator smilesCreator = new IsomericSmilesCreator(mol);
75+
content.put(MoleculeDataFormats.DF_SMILES, smilesCreator.getSmiles());
76+
77+
return content;
78+
}
79+
80+
public static void copy(StereoMolecule mol) {
81+
// JavaFx clipboard
82+
// final Clipboard clipboard = Clipboard.getSystemClipboard();
83+
// clipboard.setContent(writeContent(mol));
84+
85+
// Native clipboard
86+
// ClipboardHandler handler = new ClipboardHandler();
87+
// handler.copyMolecule(mol);
88+
}
89+
90+
public static StereoMolecule readContent(Clipboard clipboard) {
91+
StereoMolecule mol = null;
92+
List<DataFormat> formats = getAcceptedFormats(clipboard);
93+
94+
int i = -1;
95+
while (mol == null && ++i < formats.size()) {
96+
DataFormat format = formats.get(i);
97+
98+
if (format.equals(MoleculeDataFormats.DF_SERIALIZEDMOLECULE)) {
99+
System.out.println("Put molecule using " + format);
100+
try {
101+
mol = (StereoMolecule) clipboard.getContent(format);
102+
} catch (Exception e) {
103+
System.err.println("Cannot parse serialized data for molecule");
104+
}
105+
} else if (format.equals(MoleculeDataFormats.DF_MDLMOLFILEV3) || format.equals(MoleculeDataFormats.DF_MDLMOLFILE)) {
106+
System.out.println("Put molecule using " + format);
107+
try {
108+
MolfileParser p = new MolfileParser();
109+
p.parse(mol, clipboard.getContent(format).toString());
110+
} catch (Exception e) {
111+
System.err.println("Cannot parse molfile/molfilev3 data for molecule");
112+
}
113+
} else if (format.equals(DataFormat.PLAIN_TEXT)) {
114+
System.out.println("Put molecule using " + format);
115+
try {
116+
IDCodeParser p = new IDCodeParser(true);
117+
p.parse(mol, clipboard.getString());
118+
} catch (Exception e) {
119+
System.err.println("Cannot parse idcode data for molecule");
120+
}
121+
} else if (format.equals(MoleculeDataFormats.DF_SMILES)) {
122+
System.out.println("Put molecule using " + format);
123+
try {
124+
SmilesParser p = new SmilesParser();
125+
p.parse(mol, clipboard.getContent(format).toString());
126+
} catch (Exception e) {
127+
System.err.println("Cannot parse smiles data for molecule");
128+
}
129+
}
130+
}
131+
return mol;
132+
}
133+
134+
public static StereoMolecule paste() {
135+
StereoMolecule mol = null;
136+
137+
// Native clipboard
138+
// ClipboardHandler handler = new ClipboardHandler();
139+
// mol = handler.pasteMolecule();
140+
if(mol!=null) {
141+
System.out.println("Got molecule from native clipboard");
142+
} else {
143+
// JavaFx clipboard
144+
final Clipboard clipboard = Clipboard.getSystemClipboard();
145+
mol = readContent(clipboard);
146+
if(mol!=null) {
147+
System.out.println("Got molecule from standard clipboard");
148+
}
149+
}
150+
151+
return mol;
152+
}
153+
154+
public static List<DataFormat> getAcceptedFormats(Clipboard clipboard)
155+
{
156+
Set<DataFormat> formats = clipboard.getContentTypes();
157+
List<DataFormat> res = new ArrayList<DataFormat>();
158+
for (DataFormat dataFormat : MoleculeDataFormats.DATA_FORMATS) {
159+
for (DataFormat f : formats) {
160+
if (f.equals(dataFormat)) {
161+
res.add(f);
162+
break;
163+
}
164+
}
165+
}
166+
return res;
167+
}
168+
}

‎src/main/java/com/actelion/research/jfx/gui/misc/Selector.java‎

Lines changed: 46 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
1+
/*
2+
* Copyright (c) 1997 - 2016
3+
* Actelion Pharmaceuticals Ltd.
4+
* Gewerbestrasse 16
5+
* CH-4123 Allschwil, Switzerland
6+
*
7+
* All rights reserved.
8+
*
9+
* Redistribution and use in source and binary forms, with or without
10+
* modification, are permitted provided that the following conditions are met:
11+
*
12+
* 1. Redistributions of source code must retain the above copyright notice, this
13+
* list of conditions and the following disclaimer.
14+
* 2. Redistributions in binary form must reproduce the above copyright notice,
15+
* this list of conditions and the following disclaimer in the documentation
16+
* and/or other materials provided with the distribution.
17+
* 3. Neither the name of the the copyright holder nor the
18+
* names of its contributors may be used to endorse or promote products
19+
* derived from this software without specific prior written permission.
20+
*
21+
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
22+
* ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
23+
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
24+
* DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
25+
* ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
26+
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
27+
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
28+
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
29+
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
30+
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
31+
*
32+
*/
33+
34+
package com.actelion.research.jfx.gui.misc;
35+
36+
/**
37+
* Created with IntelliJ IDEA.
38+
* User: rufenec
39+
* Date: 8/6/13
40+
* Time: 2:41 PM
41+
* To change this template use File | Settings | File Templates.
42+
*/
43+
public interface Selector<T>
44+
{
45+
public boolean match(T t);
46+
}

0 commit comments

Comments
 (0)