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store frame metadata when reading a specific scene (#492)
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aicsimageio/readers/nd2_reader.py

+4
Original file line numberDiff line numberDiff line change
@@ -80,6 +80,10 @@ def _xarr_reformat(self, delayed: bool) -> xr.DataArray:
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delayed=delayed, squeeze=False, position=self.current_scene_index
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)
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xarr.attrs[constants.METADATA_UNPROCESSED] = xarr.attrs.pop("metadata")
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if self.current_scene_index is not None:
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xarr.attrs[constants.METADATA_UNPROCESSED][
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"frame"
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] = rdr.frame_metadata(self.current_scene_index)
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return xarr.isel({nd2.AXIS.POSITION: 0})
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@property

aicsimageio/tests/readers/extra_readers/test_nd2_reader.py

+10
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@@ -227,3 +227,13 @@ def test_aicsimage(
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expected_physical_pixel_sizes=expected_physical_pixel_sizes,
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expected_metadata_type=expected_metadata_type,
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)
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def test_frame_metadata() -> None:
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filename = "ND2_dims_rgb_t3p2c2z3x64y64.nd2"
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uri = get_resource_full_path(filename, LOCAL)
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rdr = ND2Reader(uri)
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rdr.set_scene(0)
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assert isinstance(
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rdr.xarray_data.attrs["unprocessed"]["frame"], nd2.structures.FrameMetadata
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)

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