diff --git a/sis/spot_table.py b/sis/spot_table.py index 98cf8af..95cac90 100644 --- a/sis/spot_table.py +++ b/sis/spot_table.py @@ -464,7 +464,6 @@ def save_csv(self, file_name: str, columns: list|None=None): 'y': self.y, 'z': self.z, 'gene_id': self.gene_ids, - 'cell_id': self.cell_ids, } if 'gene_name' in columns: col_data['gene_name'] = self.gene_names @@ -482,8 +481,6 @@ def save_csv(self, file_name: str, columns: list|None=None): # which columns to write? if columns is None: columns = ['x', 'y', 'z', 'gene_id'] - if self.cell_ids is not None: - columns.append('cell_id') # write csv header = ','.join(columns)