From d3b57a2c051455cc23dde4d9b6f3cf4e9d93f9b8 Mon Sep 17 00:00:00 2001
From: Jacob Quon <jacob.quon@alleninstitute.org>
Date: Wed, 20 Aug 2025 16:22:41 -0700
Subject: [PATCH] removed erroneous cell_ids calls in SpotTable

---
 sis/spot_table.py | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/sis/spot_table.py b/sis/spot_table.py
index 98cf8af..95cac90 100644
--- a/sis/spot_table.py
+++ b/sis/spot_table.py
@@ -464,7 +464,6 @@ def save_csv(self, file_name: str, columns: list|None=None):
             'y': self.y,
             'z': self.z,
             'gene_id': self.gene_ids,
-            'cell_id': self.cell_ids,
         }
         if 'gene_name' in columns:
             col_data['gene_name'] = self.gene_names
@@ -482,8 +481,6 @@ def save_csv(self, file_name: str, columns: list|None=None):
         # which columns to write?
         if columns is None:
             columns = ['x', 'y', 'z', 'gene_id']
-            if self.cell_ids is not None:
-                columns.append('cell_id')
                 
         # write csv
         header = ','.join(columns)