Move setup reporting to a file #31
Description
Hi @casper-boon
Line 250 in bd1babc
Can you please make it so this function that summarises the model config setup goes to a file?
Some preferences:
- File is aed_config.log
- Folder is same as folder where the AED.nml file was read from (if possible)
- ??? for env variables are replaced with host abbreviation (TFV, GLM)
---------------------- AED Variables Summary ----------------------
Var name | Module | Type | ID | Usage (ie who linked to me)
ENVIRONMENT:
temperature ??? 3D --- MAC, TRC, NCS, OXY, SIL, NIT,
PHS, OGM, PHY
salinity ??? 3D --- MAC, TRC, NCS, OXY, NIT, OGM,
density ??? 3D --- OGM, PHY
layer_ht ??? 3D --- MAC, OXY, OGM, PHY
layer_area ??? 2D --- OXY
rain ??? 2D --- NIT, PHS
rainloss ??? 2D ---
material ??? 2D ---
bathy ??? 2D ---
extc_coef ??? 3D --- MAC, OGM, PHY, TOT
tss ??? 3D ---
par ??? 3D --- MAC, OGM, PHY, TOT
cell_vel ??? 3D ---
nir ??? 3D ---
uva ??? 3D --- OGM
uvb ??? 3D --- OGM
sed_zone ??? 2D --- SDF, MAC, NCS, PHY
wind_speed ??? 2D --- OXY
par_sf ??? 2D --- MAC, PHY
taub ??? 2D --- NCS
air_temp ??? 2D --- MAC
longwave ??? 2D ---
col_num ??? 2D ---
col_depth ??? 2D ---
nearest_active ??? 2D ---
nearest_depth ??? 2D ---
STATE:
MAC_halophila aed_macrophyte 2D MAC NCS
TRC_age aed_tracer 3D TRC
NCS_ss1 aed_noncohesive 3D NCS PHS, TOT
NCS_ss1_sed aed_noncohesive 2D NCS
NCS_ss2 aed_noncohesive 3D NCS TOT
NCS_ss2_sed aed_noncohesive 2D NCS
OXY_oxy aed_oxygen 3D OXY SIL, NIT, PHS, OGM, PHY
SIL_rsi aed_silica 3D SIL PHY
NIT_amm aed_nitrogen 3D NIT OGM, PHY, TOT
NIT_nit aed_nitrogen 3D NIT OGM, PHY, TOT
PHS_frp aed_phosphorus 3D PHS OGM, PHY, TOT
PHS_frp_ads aed_phosphorus 3D PHS TOT
OGM_doc aed_organic_matter 3D OGM PHY, TOT
OGM_poc aed_organic_matter 3D OGM PHY, TOT
OGM_don aed_organic_matter 3D OGM PHY, TOT
OGM_pon aed_organic_matter 3D OGM PHY, TOT
OGM_dop aed_organic_matter 3D OGM PHY, TOT
OGM_pop aed_organic_matter 3D OGM PHY, TOT
OGM_docr aed_organic_matter 3D OGM TOT
OGM_donr aed_organic_matter 3D OGM TOT
OGM_dopr aed_organic_matter 3D OGM TOT
OGM_cpom aed_organic_matter 3D OGM TOT
PHY_grn aed_phytoplankton 3D PHY TOT
PHY_bga aed_phytoplankton 3D PHY TOT
PHY_crypt aed_phytoplankton 3D PHY TOT
PHY_diatom aed_phytoplankton 3D PHY TOT
PHY_dino aed_phytoplankton 3D PHY TOT
PHY_dino_IN aed_phytoplankton 3D PHY
PHY_mpb aed_phytoplankton 2D PHY
DIAGNOSTIC:
SDF_Fsed_oxy aed_sedflux 2D SDF OXY
SDF_Fsed_rsi aed_sedflux 2D SDF SIL
SDF_Fsed_amm aed_sedflux 2D SDF NIT
SDF_Fsed_nit aed_sedflux 2D SDF NIT
SDF_Fsed_frp aed_sedflux 2D SDF PHS
SDF_Fsed_doc aed_sedflux 2D SDF OGM
SDF_Fsed_don aed_sedflux 2D SDF OGM
SDF_Fsed_dop aed_sedflux 2D SDF OGM
MAC_par aed_macrophyte 2D MAC
MAC_gpp aed_macrophyte 2D MAC
MAC_p_r aed_macrophyte 2D MAC
MAC_mac aed_macrophyte 2D MAC
MAC_lai aed_macrophyte 2D MAC
MAC_mac_ag aed_macrophyte 2D MAC
MAC_mac_bg aed_macrophyte 2D MAC
NCS_ss1_vvel aed_noncohesive 3D NCS PHS
NCS_ss2_vvel aed_noncohesive 3D NCS
NCS_ss_sed aed_noncohesive 2D NCS
NCS_tau_0 aed_noncohesive 2D NCS
NCS_epsilon aed_noncohesive 2D NCS
NCS_fs1 aed_noncohesive 2D NCS
NCS_fs2 aed_noncohesive 2D NCS
NCS_swi_dz aed_noncohesive 2D NCS
NCS_resus aed_noncohesive 2D NCS OGM, PHY
NCS_d_taub aed_noncohesive 2D NCS
OXY_sat aed_oxygen 3D OXY
OXY_sed_oxy aed_oxygen 2D OXY
OXY_atm_oxy_flux aed_oxygen 2D OXY
SIL_sed_rsi aed_silica 2D SIL
NIT_sed_amm aed_nitrogen 2D NIT
NIT_sed_nit aed_nitrogen 2D NIT
NIT_nitrif aed_nitrogen 3D NIT
NIT_denit aed_nitrogen 3D NIT
NIT_anammox aed_nitrogen 3D NIT
NIT_dnra aed_nitrogen 3D NIT
NIT_atm_din_flux aed_nitrogen 2D NIT
PHS_sed_frp aed_phosphorus 2D PHS
PHS_atm_dip_flux aed_phosphorus 2D PHS
OGM_Psed_poc aed_organic_matter 3D OGM
OGM_Psed_cpom aed_organic_matter 3D OGM
OGM_Psed_pon aed_organic_matter 3D OGM
OGM_Psed_pop aed_organic_matter 3D OGM
OGM_CDOM aed_organic_matter 3D OGM
OGM_sed_toc aed_organic_matter 2D OGM
OGM_sed_ton aed_organic_matter 2D OGM
OGM_sed_top aed_organic_matter 2D OGM
OGM_swi_poc aed_organic_matter 2D OGM
OGM_swi_doc aed_organic_matter 2D OGM
OGM_swi_pon aed_organic_matter 2D OGM
OGM_swi_don aed_organic_matter 2D OGM
OGM_swi_pop aed_organic_matter 2D OGM
OGM_swi_dop aed_organic_matter 2D OGM
OGM_poc_hydrol aed_organic_matter 3D OGM
OGM_doc_miner aed_organic_matter 3D OGM
OGM_pon_hydrol aed_organic_matter 3D OGM
OGM_don_miner aed_organic_matter 3D OGM
OGM_pop_hydrol aed_organic_matter 3D OGM
OGM_dop_miner aed_organic_matter 3D OGM
OGM_anaerobic aed_organic_matter 3D OGM
OGM_denit aed_organic_matter 3D OGM
OGM_docr_miner aed_organic_matter 3D OGM
OGM_donr_miner aed_organic_matter 3D OGM
OGM_dopr_miner aed_organic_matter 3D OGM
OGM_BOD5 aed_organic_matter 3D OGM
OGM_pom_vvel aed_organic_matter 3D OGM
OGM_cpom_vvel aed_organic_matter 3D OGM
PHY_grn_NtoP aed_phytoplankton 3D PHY
PHY_grn_fI aed_phytoplankton 3D PHY
PHY_grn_fNit aed_phytoplankton 3D PHY
PHY_grn_fPho aed_phytoplankton 3D PHY
PHY_grn_fSil aed_phytoplankton 3D PHY
PHY_grn_fT aed_phytoplankton 3D PHY
PHY_grn_fSal aed_phytoplankton 3D PHY
PHY_grn_GPP aed_phytoplankton 3D PHY
PHY_grn_NCP aed_phytoplankton 3D PHY
PHY_grn_SED aed_phytoplankton 3D PHY
PHY_bga_NtoP aed_phytoplankton 3D PHY
PHY_bga_fI aed_phytoplankton 3D PHY
PHY_bga_fNit aed_phytoplankton 3D PHY
PHY_bga_fPho aed_phytoplankton 3D PHY
PHY_bga_fSil aed_phytoplankton 3D PHY
PHY_bga_fT aed_phytoplankton 3D PHY
PHY_bga_fSal aed_phytoplankton 3D PHY
PHY_bga_GPP aed_phytoplankton 3D PHY
PHY_bga_NCP aed_phytoplankton 3D PHY
PHY_bga_SED aed_phytoplankton 3D PHY
PHY_crypt_NtoP aed_phytoplankton 3D PHY
PHY_crypt_fI aed_phytoplankton 3D PHY
PHY_crypt_fNit aed_phytoplankton 3D PHY
PHY_crypt_fPho aed_phytoplankton 3D PHY
PHY_crypt_fSil aed_phytoplankton 3D PHY
PHY_crypt_fT aed_phytoplankton 3D PHY
PHY_crypt_fSal aed_phytoplankton 3D PHY
PHY_crypt_GPP aed_phytoplankton 3D PHY
PHY_crypt_NCP aed_phytoplankton 3D PHY
PHY_crypt_SED aed_phytoplankton 3D PHY
PHY_diatom_NtoP aed_phytoplankton 3D PHY
PHY_diatom_fI aed_phytoplankton 3D PHY
PHY_diatom_fNit aed_phytoplankton 3D PHY
PHY_diatom_fPho aed_phytoplankton 3D PHY
PHY_diatom_fSil aed_phytoplankton 3D PHY
PHY_diatom_fT aed_phytoplankton 3D PHY
PHY_diatom_fSal aed_phytoplankton 3D PHY
PHY_diatom_GPP aed_phytoplankton 3D PHY
PHY_diatom_NCP aed_phytoplankton 3D PHY
PHY_diatom_SED aed_phytoplankton 3D PHY
PHY_dino_NtoP aed_phytoplankton 3D PHY
PHY_dino_fI aed_phytoplankton 3D PHY
PHY_dino_fNit aed_phytoplankton 3D PHY
PHY_dino_fPho aed_phytoplankton 3D PHY
PHY_dino_fSil aed_phytoplankton 3D PHY
PHY_dino_fT aed_phytoplankton 3D PHY
PHY_dino_fSal aed_phytoplankton 3D PHY
PHY_dino_GPP aed_phytoplankton 3D PHY
PHY_dino_NCP aed_phytoplankton 3D PHY
PHY_dino_SED aed_phytoplankton 3D PHY
PHY_dino_vvel aed_phytoplankton 3D PHY
PHY_Psed_phy aed_phytoplankton 3D PHY
PHY_GPP aed_phytoplankton 3D PHY
PHY_NCP aed_phytoplankton 3D PHY
PHY_PPR aed_phytoplankton 3D PHY
PHY_NPR aed_phytoplankton 3D PHY
PHY_NUP_no3 aed_phytoplankton 3D PHY
PHY_NUP_nh4 aed_phytoplankton 3D PHY
PHY_PUP aed_phytoplankton 3D PHY
PHY_CUP aed_phytoplankton 3D PHY
PHY_PAR aed_phytoplankton 3D PHY
PHY_TCHLA aed_phytoplankton 3D PHY
PHY_TPHYS aed_phytoplankton 3D PHY
PHY_IN aed_phytoplankton 3D PHY
PHY_IP aed_phytoplankton 3D PHY
PHY_MPB aed_phytoplankton 2D PHY
PHY_BPP aed_phytoplankton 2D PHY
PHY_BCP aed_phytoplankton 2D PHY
PHY_MPBV aed_phytoplankton 2D PHY
TOT_tn aed_totals 3D TOT
TOT_tp aed_totals 3D TOT
TOT_toc aed_totals 3D TOT
TOT_tss aed_totals 3D TOT
TOT_turbidity aed_totals 3D TOT
TOT_light aed_totals 3D TOT
TOT_par aed_totals 3D TOT
TOT_uv aed_totals 3D TOT
TOT_extc aed_totals 3D TOT