update 1.3.0 topology

Author: ArnovanHilten

GenNet_utils/Create_plots.py

@@ -9,9 +9,6 @@
 from GenNet_utils.Utility_functions import query_yes_no, get_paths
 
 
-
-
-
 def cicos_plot(resultpath, importance_csv, plot_weights=True, plot_arrows=False):
     print("in progress...")
     colormap = ['#7dcfe2', '#4b78b5', 'darkgrey', 'dimgray'] * 1000
@@ -156,10 +153,8 @@ def manhattan_importance(resultpath, importance_csv, num_annotated=10):
     colormap = ['#7dcfe2', '#4b78b5', 'darkgrey', 'dimgray'] * len(color_end)
 
     for i in range(len(color_end) - 1):
-
         plt.scatter(x[color_end[i]:color_end[i + 1]], weights[color_end[i]:color_end[i + 1]], c=colormap[i])
 
-
     plt.ylim(bottom=0, top=1.2)
     plt.xlim(0, len(weights) + int(len(weights) / 100))
     plt.title("Raw Importance Manhattan", size=36)
@@ -191,6 +186,7 @@ def manhattan_importance(resultpath, importance_csv, num_annotated=10):
     plt.savefig(resultpath + "Path_importance.png", bbox_inches='tight', pad_inches=0)
     plt.show()
 
+
 def plot(args):
     folder, resultpath = get_paths(args.ID)
     importance_csv = pd.read_csv(resultpath + "/connection_weights.csv", index_col=0)
@@ -204,4 +200,4 @@ def plot(args):
         manhattan_importance(resultpath=resultpath, importance_csv=importance_csv)
     else:
         print("invalid type:", args.type)
-        exit()
+        exit()