update format

Author: Arslan-Siraj

content/analyze.py

@@ -436,7 +436,7 @@ def terminate_subprocess():
         # then download link for identification file of above criteria 
         download_selected_result_files_new(identification_files, link_name=f":arrow_down: {protocol_name}_XL_identification_files", zip_filename=f"{protocol_name}_XL_identification_files")
 
-        st.success("⚡️**Analyzing with NuXL Completed Successfully!** ⚡️")
+        st.success("⚡️**Analyzing with NuXL Completed Successfully!** ⚡️")
 
     else:
         # Display error message

content/dia_library.py

@@ -72,7 +72,7 @@
       "iRT calibration model",
       options=["linear", "piecewise"],
       index=0,
-      help="Select the functional form used for iRT calibration."
+      help="Select the functional form used for iRT calibration. If no file from MSFragger is available, it will be skipped automatically."
       )    
     #run_FileInfo = st.checkbox("Run mzML FileInfo", value = True, help="If checked, FileInfo will be run on the selected mzML files to provide additional information in log.")
 
@@ -282,10 +282,10 @@ def log(msg: str):
                         log(f"{result_FileInfo.stdout}\n")
 
             #-------------------check FileInfo output-----------------
-            if "ion mobility: <none> .. <none>" in result_FileInfo.stdout:
-                  log("\n====> WARNING: No ion mobility information found in mzML files. Please ensure your data contains ion mobility for library generation. <====\n")
-                  st.error("No ion mobility information found in mzML files. Please ensure your data contains ion mobility for library generation.")
-                  st.stop()
+            #if "ion mobility: <none> .. <none>" in result_FileInfo.stdout:
+            #      log("\n====> WARNING: No ion mobility information found in mzML files. Please ensure your data contains ion mobility for library generation. <====\n")
+            #      st.error("No ion mobility information found in mzML files. Please ensure your data contains ion mobility for library generation.")
+            #      st.stop()
 
             #---------------upload the library file from MSFragger---------------------
             if uploaded_file is not None:

content/rescoring.py

@@ -382,7 +382,7 @@ def terminate_subprocess():
             #download_selected_result_files(files_to_download, link_name=f":arrow_down: {id_file}_rescoring_out_files", zip_filename=f"{id_file}_rescoring_out_files")
             download_selected_result_files_new(files_to_download, link_name=f":arrow_down: {id_file}_rescoring_out_files", zip_filename=f"{id_file}_rescoring_out_files")
 
-            st.success("⚡️**Rescoring Completed Successfully!** ⚡️")
+            st.success("⚡️**Rescoring Completed Successfully!** ⚡️")
 
         else:
             # Display error message