install in docker

Author: Arslan-Siraj

Dockerfile

@@ -163,6 +163,12 @@ RUN make -j4 pyopenms
 WORKDIR /openms-build_py/pyOpenMS
 RUN pip install dist/*.whl
 
+# install rescore
+# Copy the package into the image
+COPY ./nuxl_rescore/nuxl_rescore-0.0.1.tar.gz /tmp/nuxl_rescore-0.0.1.tar.gz
+# Install it
+RUN pip install /tmp/nuxl_rescore-0.0.1.tar.gz
+
 # Prepare and run streamlit app.
 FROM compile-openms AS run-app
 # Create workdir and copy over all streamlit related files/folders.

environment.yml

@@ -11,8 +11,7 @@ dependencies:
   - mono==6.12.0.90
   - numpy==1.22.4 #dependency depend on pyopenms version
   - pip: # dependencies only available through pip
-      # streamlit dependencies
-    - ./nuxl_rescore/nuxl_rescore-0.0.1.tar.gz   
+      # streamlit dependencies  
     - streamlit==1.38.0
     - streamlit-plotly-events==0.0.6
     - streamlit-aggrid==0.3.4.post3