Merge pull request #167 from AustralianBioCommons/fix-approval-email-url #531
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| name: Check DB migrations | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| check-migrations-postgres: | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| image: postgres:17 | |
| env: | |
| POSTGRES_USER: testuser | |
| POSTGRES_PASSWORD: testpass | |
| POSTGRES_DB: testdb | |
| ports: | |
| - 5433:5432 | |
| options: >- | |
| --health-cmd "pg_isready -U testuser -d testdb -p 5432" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| env: | |
| DB_URL: postgresql+psycopg://testuser:testpass@localhost:5433/testdb | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.13 | |
| - name: Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.cargo/bin" >> $GITHUB_PATH | |
| - name: Create virtual environment and install dependencies | |
| run: | | |
| uv venv | |
| uv sync --extra dev | |
| - name: Install PostgreSQL client (psql) | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y postgresql-client | |
| - name: Prepare DB and run Alembic check | |
| run: | | |
| uv run alembic upgrade head | |
| uv run alembic check | |
| - name: Downgrade migrations one by one | |
| run: | | |
| set -euo pipefail | |
| while uv run alembic current | grep -vq "None"; do | |
| uv run alembic downgrade -1 | |
| done | |
| - name: Reset database contents | |
| env: | |
| PGPASSWORD: testpass | |
| run: | | |
| psql -h localhost -p 5433 -U testuser -d testdb -c "DROP SCHEMA public CASCADE; CREATE SCHEMA public;" | |
| - name: Run migrations via bootstrap | |
| run: | | |
| uv run scripts/bootstrap.py migrate | |
| uv run alembic check | |
| check-migrations-sqlite: | |
| runs-on: ubuntu-latest | |
| env: | |
| DB_URL: sqlite:////tmp/aai_migrations.sqlite | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.13 | |
| - name: Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.cargo/bin" >> $GITHUB_PATH | |
| - name: Create virtual environment and install dependencies | |
| run: | | |
| uv venv | |
| uv sync --extra dev | |
| - name: Migrate and check Alembic (SQLite) | |
| run: | | |
| uv run alembic upgrade head | |
| uv run alembic check | |
| - name: Downgrade migrations one by one (SQLite) | |
| run: | | |
| set -euo pipefail | |
| while uv run alembic current | grep -vq "None"; do | |
| uv run alembic downgrade -1 | |
| done | |
| - name: Reset database file (SQLite) | |
| run: | | |
| rm -f /tmp/aai_migrations.sqlite | |
| - name: Run migrations via bootstrap (SQLite) | |
| run: | | |
| uv run scripts/bootstrap.py migrate | |
| uv run alembic check |