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Merge pull request #24 from AustralianBioCommons/landing_page
Updated landing and project/allocation pages
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‎_data/sidebars/main.yml‎

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subitems:
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- title: Home
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url: /index
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- title: Eligibility
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url: /eligibility
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- title: Getting started
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url: /projects_allocations
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- title: ABLeS processes
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url: /processes
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- title: Available resources
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url: /resources

‎eligibility.md‎

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# Eligibility
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ABLeS is available to research groups and bioinformatics communities across Australia.
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Participants who wish to use ABLeS must ensure their projects align with ABLeS principles.
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## Principles of ABLeS projects
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ABLeS projects broadly align with the following three principles:
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1. Projects are life science related and contribute to producing and sharing data, research, or software-based outcomes.
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2. Project participants must have the necessary expertise to drive and execute the bioinformatics goals of their work.
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3. Projects must plan and utilize ABLeS resources responsibly, recognizing their status as finite and consumable.
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More details are provided in the table below:
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font-weight:normal;overflow:hidden;padding:10px 5px;word-break:normal;}
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</style>
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<table class="tg">
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<thead>
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<tr>
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<th class="tg-kcp5" rowspan="2">Principle</th>
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<th class="tg-kcp5" rowspan="2">Characteristics</th>
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<th class="tg-kcp5" colspan="3">Project Type</th>
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</tr>
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<tr>
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<th class="tg-7o2y">Reference Data</th>
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<th class="tg-7o2y">Production Bioinformatics</th>
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<th class="tg-7o2y">Software Accelerator</th>
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</tr>
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</thead>
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<tbody>
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<td class="tg-baqh">Data centric outcomes</td>
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<td class="tg-0lax">Production of reference and derived data assets that will be published to enable use / reuse by others outside the group.</td>
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<td class="tg-baqh">&#10003;</td>
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<td class="tg-baqh">&#10003;</td>
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<td class="tg-baqh"></td>
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</tr>
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<tr>
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<td class="tg-baqh">Research centric outcomes</td>
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<td class="tg-0lax">Production of data assets and outputs that are critical to research projects and consortia making use of best practice, production level bioinformatics approaches.</td>
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<td class="tg-baqh"></td>
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<td class="tg-baqh">&#10003;</td>
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<td class="tg-baqh"></td>
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</tr>
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<tr>
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<td class="tg-baqh">Software centric outcomes</td>
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<td class="tg-0lax">Creation, development, installation, testing and/or optimisation of software that will be made available for use / reuse by others in the life sciences community.</td>
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<td class="tg-baqh"></td>
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<td class="tg-baqh"></td>
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<td class="tg-baqh">&#10003;</td>
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</tr>
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<tr>
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<td class="tg-baqh">Common research theme</td>
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<td class="tg-0lax">A defined cross-institutional collaboration, project, community, consortium, or some other collaborative construct, that is focused on a common research theme.</td>
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<td class="tg-baqh" colspan="3">&#10003;</td>
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</tr>
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<tr>
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<td class="tg-baqh">Development & optimisation</td>
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<td class="tg-0lax">Groups work to understand their software, methods and the optimal approaches to solving the bioinformatics problems at hand. ABLeS will facilitate both the experimental / testing and production phases of computational analyses.</td>
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<td class="tg-baqh" colspan="3">&#10003;</td>
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</tr>
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<tr>
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<td class="tg-baqh">Planned usage of ABLeS resources</td>
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<td class="tg-0lax">The use of ABLeS resources is planned and approached with a level of care appropriate to their status as limited and consumable resources.</td>
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<td class="tg-baqh" colspan="3">&#10003;</td>
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</tr>
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<tr>
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<td class="tg-baqh">Sharing</td>
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<td class="tg-0lax">Appropriate mechanisms are used to share outputs that support and assist other groups, with examples provided <a href="https://doi.org/10.5281/zenodo.10139651">in the ABLeS publication</a>. Outputs include software, methods, training, resource usage and quality assessments for derived reference data sets, submissions to data international repositories and research publications.</td>
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<td class="tg-baqh" colspan="3">&#10003;</td>
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</tr>
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</tbody>
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</table>

‎images/ABLeS_project_lifetime.png‎

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‎index.md‎

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toc: false
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---
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## Quick access links
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<div class="grid gap-2" style="box-sizing: content-box;">
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLSf9UVEuhbAsbvVzTEvvE9mLoietryb7e3sDmv74Xhl-1YWj2Q/viewform?usp=sf_link" style="margin:10px; padding:10px;">Request New Project</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLSfzHJajEKTnGuYWb1gLRR2nlUExLIRM7qSGy_hhbiCKB3KX2Q/viewform?usp=sf_link" style="margin:10px; padding: 10px 0px 10px 0px;">Request Additional Resources</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLScpiyqERdxw6gMxjlq_CkiI3qvJ60YaeWHKTJChMjcnv8aBBA/viewform?usp=sf_link" style="margin:10px; padding: 10px 0px 10px 0px;"> Request Software Installation</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLSere1PvgPEuJkpvQUk1-11C88IAeQNQKEUFc-Qgbn5GgKK2jw/viewform?usp=sf_link" style="margin:10px; padding:10px;">Request Help</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLSdO1w-RY8OexUBwJx8BHNMwSRNPA3_-5r6pefdQW8ancbKZqw/viewform?usp=sf_link" style="margin:10px; padding:10px;">Report Project Outcome</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="/ables/resources/#shared-repository-of-tools-and-software" style="margin:10px; padding:10px;">Available Tools</a>
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</div>
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## About ABLeS
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The ABLeS (Australian BioCommons Leadership Share) program was established in April 2021 to more readily support data-driven bioinformatics. This effort is supported by [Australian BioCommons](https://www.biocommons.org.au/) in partnership with Bioplatforms Australia, [National Computational Infrastructure (NCI, Canberra)](https://nci.org.au/), and the [Pawsey Supercomputing Research Centre (Pawsey, Perth)](https://pawsey.org.au/).
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ABLeS targets established groups and communities that are focused on a common research theme, create reference data and/or software, and have the ability to plan and prioritise a computational research program.
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ABLeS offers access to:
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ABLeS projects broadly align with the following three principles:
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- computational and data infrastructure;
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- specialized expertise;
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- support on adopting best practices and effectively sharing outputs;
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- a community-driven repository of bioinformatics software, including tools and workflows.
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1. They are life science related and are producing and sharing data, research, or software centric outcomes.
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<br/>
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2. The project users have expertise which will drive and execute its bioinformatics agenda of the project.
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Watch this 10 minute overview of ABLeS from the [Australian BioCommons YouTube Channel](https://www.youtube.com/watch?v=fvUfzpaHz3U):
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3. Resources are planned and approached with a level of care appropriate to their status as limited and consumable resources.
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<iframe width="560" height="315" src="https://www.youtube.com/embed/fvUfzpaHz3U?si=tr6ze71wqYRiVs0u" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe>
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The support available includes access to computational and data infrastructure, specialist expertise, support to adopt best practices and share outputs effectively, and a community led and shared repository of bioinformatics software (i.e. tools and workflows).
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<br/>
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More details are available in the ABLeS publication:
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If you want to read more about ABLeS, more details are available in the ABLeS publication:
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> **Gustafsson, Ove Johan Ragnar, Al Bkhetan, Ziad, Francis, Rhys & Manos, Steven.** (2023). *Enabling national step changes in bioinformatics through ABLeS, the Australian BioCommons Leadership Share (3.0).* Zenodo. [https://doi.org/10.5281/zenodo.10139651](https://doi.org/10.5281/zenodo.10139651)
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You can also watch a 10 minute overview of ABLeS on the Australian BioCommons YouTube Channel:
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>**[Introduction to ABLeS](https://youtu.be/fvUfzpaHz3U)**
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## ABLeS project types
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### Creation of reference data assets
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<br/>
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ABLeS reference data allocations support research groups and consortia within the life sciences to access the dedicated compute capacity required to efficiently construct reference data.
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### Production bioinformatics
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Institutes, consortia and core facilities are increasingly facing issues scaling their in-house compute and data infrastructure to the questions, sample sizes, and data set sizes they are addressing as part of their research programs. ABLeS production allocations support these groups to implement and run their computational workflow approaches for omics data analysis *at scale*.
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### Software accelerator
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## Quick access links
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Software accelerator allocations will directly support the further development, installation, optimisation, testing and/or benchmarking of bioinformatics software. These allocations are intended to create a culture of best practice in software, helping bioinformaticians to effectively share and document their work, and make it [FAIR (findable, accessible, interoperable and reusable)](https://doi.org/10.1038/s41597-022-01710-x).
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<div class="grid gap-2" style="box-sizing: content-box;">
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLSf9UVEuhbAsbvVzTEvvE9mLoietryb7e3sDmv74Xhl-1YWj2Q/viewform?usp=sf_link" style="margin:10px; padding:10px;">Request New Project</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLSfzHJajEKTnGuYWb1gLRR2nlUExLIRM7qSGy_hhbiCKB3KX2Q/viewform?usp=sf_link" style="margin:10px; padding: 10px 0px 10px 0px;">Request Additional Resources</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLScpiyqERdxw6gMxjlq_CkiI3qvJ60YaeWHKTJChMjcnv8aBBA/viewform?usp=sf_link" style="margin:10px; padding: 10px 0px 10px 0px;"> Request Software Installation</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLSere1PvgPEuJkpvQUk1-11C88IAeQNQKEUFc-Qgbn5GgKK2jw/viewform?usp=sf_link" style="margin:10px; padding:10px;">Request Help</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="https://docs.google.com/forms/d/e/1FAIpQLSdO1w-RY8OexUBwJx8BHNMwSRNPA3_-5r6pefdQW8ancbKZqw/viewform?usp=sf_link" style="margin:10px; padding:10px;">Report Project Outcome</a>
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<a class="btn btn-primary col-lg-5 col-xl-3 col-xxl-3 col-md-5 col-sm-8 col-8" href="/ables/resources/#shared-repository-of-tools-and-software" style="margin:10px; padding:10px;">Available Tools</a>
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</div>
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<br/>
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## Acknowledgements
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ABLeS is co-funded by <a href="https://bioplatforms.com/biocommons/">Bioplatforms Australia</a>, <a href="https://nci.org.au/">the National Computational Infrastructure (NCI)</a> and <a href="https://pawsey.org.au/">Pawsey Supercomputing Research Centre</a>. This program forms part of the national Australian BioCommons infrastructure.
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{% include affiliation-tiles-selection.html type="infrastructure" %}
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