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Merge pull request #30 from AustralianBioCommons/pr-edit
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participants/IgTRrefWGS.md

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title: Producing a haplotype-resolved germline Ig/TR reference assembly with high-fidelity whole genome sequencing in commonly-used laboratory mouse strains.
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title: Transplantation Immunobiology Group, Central Clinical School, The University of Sydney
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description: Defining accurate strain-specific germline references is an essential tool for understanding the development of B and T cells during immune responses. We are producing a haplotype-resolved Immunoglobulin and T cell receptor germline reference assembly using high-fidelity whole genome sequencing on BALB/c and B10.BR mice, followed by de-novo reference assembly, contig-alignment and annotation.
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type: ABLeS Participant
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- Dr Katherine Jackson, Immunogenomics Lab, [The Garvan Institute of Medical Research](https://www.garvan.org.au/), Australia
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- A/Prof Alexandra Sharland, Transplantation Immunobiology Group, [Central Clinical School](https://www.sydney.edu.au/medicine-health/schools/sydney-medical-school/clinical-schools/central-clinical-school.html), The University of Sydney, Australia
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- Shivanjali Ratnaseelan, Transplantation Immunobiology Group, [Central Clinical School](https://www.sydney.edu.au/medicine-health/schools/sydney-medical-school/clinical-schools/central-clinical-school.html), The University of Sydney, Australia
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- Martina Denkova, Transplantation Immunobiology Group, [Central Clinical School](https://www.sydney.edu.au/medicine-health/schools/sydney-medical-school/clinical-schools/central-clinical-school.html), The University of Sydney, Australia
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- Martina Denkova, Transplantation Immunobiology Group, [Central Clinical School](https://www.sydney.edu.au/medicine-health/schools/sydney-medical-school/clinical-schools/central-clinical-school.html), The University of Sydney, Australia
2020

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**Bioinformatics support:**
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participants/NSWPToL.md

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title: Workspace for New South Wales Plant Tree of Life (NSWPToL) project
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title: Botanic Gardens of Sydney;
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description: We aim to use the Angiosperms353 target capture methodology to sequence every native NSW flowering plant species during stage one of our Phylogenomic Flagship project (about 7000 species and subspecies).
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type: ABLeS Participant
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## Project title
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Producing a haplotype-resolved germline Ig/TR reference assembly with high-fidelity whole genome sequencing in commonly-used laboratory mouse strains.
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Workspace for New South Wales Plant Tree of Life (NSWPToL) project.
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## Collaborators and funding
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participants/cotton.md

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title: Quantitative Proteomics Analysis of Drought Tolerance in Australian Wild Cotton Species
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title: Australian Proteome Facility
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description: This project investigates drought tolerance in Australian wild cotton species through quantitative proteomics analysis, comparing protein expression under drought and normal conditions. We will annotate protein sequences for three species using publicly available genomic and transcriptomic data, aiding our understanding of their drought response mechanisms.
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type: ABLeS Participant

participants/haemosphere.md

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title: Haemosphere - An online database of blood cell gene expression
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title: Walter and Eliza Hall Medical Research Institute
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description: Haemosphere is a publicly available resource of transcriptional data for human and mouse blood cells. This allows researchers around the world to access the expression data for their genes of interest, and identify novel genes that are interesting in their field of study.
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type: ABLeS Participant

participants/termites.md

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title: Testing links between life-history and genome evolution
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title: Evolution and Phylogenetics Lab, The University of Sydney
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description: This project will investigate the formation of unusual chains of chromosomes that are increasingly being found in various vertebrate and invertebrate taxa, using an organism in which they are most commonly found, termites. We will test the hypothesis that inbreeding drives the evolution of meiotic sex linked chromosomes.
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type: ABLeS Participant

participants/treeoflife.md

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title: Australian Tree of Life Infrastructure Establishment
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title: Australian BioCommons
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description: Faster generation, publication and re-use of reference genomes for Australian species.
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type: ABLeS Participant

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