|
121 | 121 | related_pages: |
122 | 122 | - structural_biology |
123 | 123 | url: https://australian-structural-biology-computing.github.io/website/best-practices-alphafold |
124 | | -- id: ontvisc_hpc_seqera_service_guide |
125 | | - description: This is a guide outlining how to set up and execute the ONTViSc pipeline on three |
126 | | - high-performance computing systems hosted by Australian research and computing facilities - |
127 | | - Lyra (Queensland University of Technology), Gadi (National Computational Infrastructure) and |
128 | | - Setonix (Pawsey Supercomputing Research Centre). Throughout this guide we make use of the Australian Nextflow Seqera |
129 | | - Service provided to researchers by Australian BioCommons. |
130 | | - url: https://mantczakaus.github.io/ontvisc_hpc_seqera_service_guide/ |
| 124 | +- description: 'This is a guide outlining how to set up and execute [the ONTViSc pipeline](https://github.com/eresearchqut/ONTViSc) |
| 125 | + on three high-performance computing systems hosted by Australian research and |
| 126 | + computing facilities: [Lyra (Queensland University of Technology)](https://eresearchqut.atlassian.net/wiki/spaces/EG/pages/1545143157/Start+using+the+HPC), |
| 127 | + [Gadi (National Computational Infrastructure)](https://opus.nci.org.au/display/Help/Gadi+User+Guide) |
| 128 | + and [Setonix (Pawsey)](https://support.pawsey.org.au/documentation/display/US/Setonix+User+Guide). |
| 129 | + Throughout this guide we will make use of the Australian Nextflow Seqera Service |
| 130 | + provided to the researchers by [Australian BioCommons](https://www.biocommons.org.au/). ' |
| 131 | + id: ontvisc_hpc_seqera_service_guide |
131 | 132 | name: ONTViSc pipeline on HPC using Australian Nextflow Seqera Service |
| 133 | + registry: {} |
132 | 134 | related_pages: |
133 | | - - metagenomics |
134 | | - registry: |
135 | | - wfh: https://workflowhub.eu/workflows/683 |
136 | | - |
| 135 | + - metagenomics |
| 136 | + url: https://mantczakaus.github.io/ontvisc_hpc_seqera_service_guide/ |
| 137 | +- description: A collection of how-tos and example code for running comparative tests |
| 138 | + on in-situ single cell spatial RNA experiments. |
| 139 | + id: spatialsampler |
| 140 | + name: Spatial Sampler- Spatial transcriptomics howtos |
| 141 | + registry: {} |
| 142 | + related_pages: |
| 143 | + - transcriptomics |
| 144 | + url: https://swbioinf.github.io/spatialsnippets/index.html |
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