In the case where the target coverage is above the actual estimated coverage of the input file, we should not produce a fastq output.
Should an entry still be made in the summary spreadsheet? Maybe something like this, with NA for any target coverage that couldn't be achieved?
sample_id total_reads total_bases q30_rate target_coverage
sample-01 42158 10000353 0.881622 2
sample-01 105510 25000351 0.883446 5
sample-01 210932 50000154 0.883396 10
sample-01 421748 100000287 0.882951 20
sample-01 632628 150000289 0.88305 30
sample-01 843538 200000061 0.883072 40
sample-01 NA NA NA 200
sample-01 1172548 278027194 0.882882 original
In the case where the target coverage is above the actual estimated coverage of the input file, we should not produce a fastq output.
Should an entry still be made in the summary spreadsheet? Maybe something like this, with
NAfor any target coverage that couldn't be achieved?