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1 parent a08f288 commit bce7883Copy full SHA for bce7883
README.md
@@ -42,9 +42,13 @@ nextflow run BCCDC-PHL/routine-sequence-qc \
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│ └── basic_qc_stats.csv
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├── bracken
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│ ├── <sample_id>_Genus_bracken_abundances.tsv
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+│ ├── <sample_id>_Genus_bracken_abundances_adjusted.tsv
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│ ├── <sample_id>_Genus_bracken.txt
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+│ ├── <sample_id>_Genus_bracken_adjusted.txt
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│ ├── <sample_id>_Species_bracken_abundances.tsv
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+│ ├── <sample_id>_Species_bracken_abundances_adjusted.tsv
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│ ├── <sample_id>_Species_bracken.txt
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+│ ├── <sample_id>_Species_bracken_adjusted.txt
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│ ├── ...
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├── fastqc
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│ ├── <sample_id>_R1_fastqc
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