This pipeline outputs a phylogenetic tree whose branch lengths are in units of 'substitutions per site'. It can often be more intuitive to translate those branch lengths into 'number of substitutions'. To do so we need to multiply by the number of sites that are included in the alignment file used to generate the tree.
Add a process to calculate the number of sites in the clean.core.aln file that is used to generate the phylogenetic tree, and make that information readily available in the outputs.
This pipeline outputs a phylogenetic tree whose branch lengths are in units of 'substitutions per site'. It can often be more intuitive to translate those branch lengths into 'number of substitutions'. To do so we need to multiply by the number of sites that are included in the alignment file used to generate the tree.
Add a process to calculate the number of sites in the
clean.core.alnfile that is used to generate the phylogenetic tree, and make that information readily available in the outputs.