update container naming

taranewman · taranewman · commit 6783ecc89ef5 · 2025-08-28T12:25:42.000-07:00
diff --git a/environments/seaborn.yml b/environments/seaborn.yml
@@ -1,4 +1,4 @@
-name: seaborn
+name: tbprofiler-nf-seaborn
 channels:
   - conda-forge
   - bioconda
diff --git a/environments/snpit.yml b/environments/snpit.yml
@@ -1,4 +1,4 @@
-name: snpit
+name: tbprofiler-nf-snpit
 channels:
   - conda-forge
   - bioconda
diff --git a/nextflow.config b/nextflow.config
@@ -64,7 +64,7 @@ profiles {
 
     apptainer {
     	apptainer.enabled = true
-	    process.container = "oras://ghcr.io/bccdc-phl/tbprofiler-nf:9e89d28e3de50f49"
+	    process.container = "oras://ghcr.io/bccdc-phl/tbprofiler-nf:8c378f873be9f5ac"
 	    if (params.cache) {
 	        apptainer.cacheDir = params.cache
 	    }
@@ -95,7 +95,7 @@ process {
  
 	withName: plot_coverage {
 
-    conda = "$baseDir/environments/bakta.yml"
+    conda = "$baseDir/environments/seaborn.yml"
 	container = "oras://ghcr.io/bccdc-phl/seaborn:1e75cc4939fa0e57"
 
     }

Original file line number	Diff line number	Diff line change
`@@ -64,7 +64,7 @@ profiles {`
`64`	`64`
`65`	`65`	`apptainer {`
`66`	`66`	`apptainer.enabled = true`
`67`		`- process.container = "oras://ghcr.io/bccdc-phl/tbprofiler-nf:9e89d28e3de50f49"`
	`67`	`+ process.container = "oras://ghcr.io/bccdc-phl/tbprofiler-nf:8c378f873be9f5ac"`
`68`	`68`	`if (params.cache) {`
`69`	`69`	`apptainer.cacheDir = params.cache`
`70`	`70`	`}`
`@@ -95,7 +95,7 @@ process {`
`95`	`95`
`96`	`96`	`withName: plot_coverage {`
`97`	`97`
`98`		`- conda = "$baseDir/environments/bakta.yml"`
	`98`	`+ conda = "$baseDir/environments/seaborn.yml"`
`99`	`99`	`container = "oras://ghcr.io/bccdc-phl/seaborn:1e75cc4939fa0e57"`
`100`	`100`
`101`	`101`	`}`