Implements intellij suggestions

Adds get signature in reader method (hence the minor version bump)

Author: NicoKiaru

pom.xml

@@ -5,13 +5,13 @@
 	<parent>
 		<groupId>org.scijava</groupId>
 		<artifactId>pom-scijava</artifactId>
-		<version>40.0.0</version>
+		<version>43.0.0</version>
 		<relativePath />
 	</parent>
 
 	<groupId>ch.epfl.biop</groupId>
 	<artifactId>quick-start-czi-reader</artifactId>
-	<version>0.2.7-SNAPSHOT</version>
+	<version>0.3.0-SNAPSHOT</version>
 
 	<name>Quick Start CZI Reader</name>
 	<description>A Bio-Formats CZI Reader that starts fast and with low memory footprint</description>
@@ -105,7 +105,7 @@
 		<maven.compiler.target>19</maven.compiler.target>
 		<maven.compiler.testSource>19</maven.compiler.testSource>
 		<maven.compiler.testTarget>19</maven.compiler.testTarget>-->
-		<bf.version>8.0.1</bf.version>
+		<bf.version>8.3.0</bf.version>
 	</properties>
 
 	<repositories>

src/main/java/ch/epfl/biop/formats/in/ZeissQuickStartCZIReader.java

@@ -358,6 +358,10 @@ public ZeissQuickStartCZIReader() {
         suffixNecessary = false;
     }
 
+    public Map<String, Integer> getDimensions(int coreIndex) {
+        return this.coreIndexToSignature.get(coreIndex).getDimensions();
+    }
+
     /** Duplicates 'that' reader for parallel reading.
      * Creating another reader using this constructor allows to keep a very low memory footprint
      * because all immutable objects are re-used by reference.
@@ -934,6 +938,7 @@ private synchronized RandomAccessInputStream getStream(int filePart) throws IOEx
         ris.order(isLittleEndian());
         return ris;
     }
+
     @Override
     public int getOptimalTileWidth() {
         if (maxBlockSizeX>0) {
@@ -1802,6 +1807,7 @@ private static int dimensionPriority(String dimension) {
      */
     static class CoreSignature implements Comparable<CoreSignature> {
         final String signature;
+
         final int hashCode;
 
         final int filePart;
@@ -2165,8 +2171,6 @@ public synchronized void clear() {
         }
     }
 
-
-
     /**
      * This Zeiss Reader class was initially huge and contained many fields. One issue
      * is that these fields were only necessary during the reader initialisation (method initFile)

src/main/java/ch/epfl/biop/formats/in/libczi/LibCZI.java

@@ -29,7 +29,7 @@
  * <p>
  * Timestamps reading inspired by <a href="https://gist.github.com/mutterer/5fbddc293d6c969a9d02778f1551b73f">Jerome's macro</a>
  * <p>
- * See @see <a href="https://zeiss.github.io/">CZI reference documentation</a>
+ * See @see <a href="https://zeiss.github.io/libczi">CZI reference documentation</a>
  * <p>
  * Used in {@link ZeissQuickStartCZIReader}
  *
@@ -544,9 +544,9 @@ public static class SubBlockDirectoryEntry {
                 public String toString() {
                     if (entryDV!=null) {
                         StringBuilder sb = new StringBuilder();
-                        sb.append("pixelType "+this.getPixelType()+" compression = "+getCompression()+"\n");
+                        sb.append("pixelType ").append(this.getPixelType()).append(" compression = ").append(getCompression()).append("\n");
                         for (SubBlockSegment.SubBlockSegmentData.SubBlockDirectoryEntryDV.DimensionEntry entry: getDimensionEntries()) {
-                            sb.append(entry+"\n");
+                            sb.append(entry).append("\n");
                         }
                         return sb.toString();
                     } else return "entryDE not supported";

src/test/java/ch/epfl/biop/formats/in/OpenFile.java

@@ -12,8 +12,11 @@ public class OpenFile {
     public static void main(String... args) throws Exception {
         // TODO: fix dataset
         //ij.Prefs.set("bioformats.enabled.ZeissCZI", false);
-        //ij.Prefs.set("bioformats.enabled.ZeissQuickStartCZI", true);
+        /*ij.Prefs.set("bioformats.enabled.ZeissQuickStartCZI", true);
         ImageJ fiji = new ImageJ();
-        fiji.ui().showUI();
+        fiji.ui().showUI();*/
+        ZeissQuickStartCZIReader r = new ZeissQuickStartCZIReader();
+        r.setId("C:\\Users\\Nicolas\\Downloads\\MouseBrain_41Slices_1Tile_1Channel_2Illuminations_2Angles.czi");
+        r.setId("C:\\Users\\Nicolas\\Downloads\\MouseBrain_41Slices_2x2Tiles_3Channels_2Illuminations_1Angle.czi");
     }
 }