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RdornierRdornier
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Merge pull request #11 from BIOP/v0.7.0
update for qupath 0.7.0
2 parents 70d2c06 + 620ffae commit 08dbb2c

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‎.github/workflows/build_jar.yml‎

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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- name: Set up JDK 21
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- name: Set up JDK 25
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uses: actions/setup-java@v3
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with:
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java-version: '21'
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java-version: '25'
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distribution: 'temurin'
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- name: Grant execute permission for gradlew
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run: chmod +x gradlew
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- name: Build with Gradle
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run: ./gradlew build -P toolchain=21
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run: ./gradlew build
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- uses: actions/upload-artifact@v3
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with:
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name: jar

‎.github/workflows/gradle.yml‎

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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- name: Set up JDK 21
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- name: Set up JDK 25
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uses: actions/setup-java@v3
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with:
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java-version: '21'
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java-version: '25'
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distribution: 'temurin'
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- name: Grant execute permission for gradlew
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run: chmod +x gradlew
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- name: Build with Gradle
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run: ./gradlew build -P toolchain=21
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run: ./gradlew build

‎build.gradle.kts‎

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qupathExtension {
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name = "qupath-extension-biop"
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group = "ch.epfl.biop"
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version = "3.6.1-SNAPSHOT"
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version = "3.7.0"
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description = "QuPath extension containing utility functions by the BIOP"
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automaticModule = "qupath.ext.biop"
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}

‎docs/allclasses-index.html‎

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<!DOCTYPE HTML>
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<html lang="en">
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<head>
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<!-- Generated by javadoc (21) -->
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<title>All Classes and Interfaces (qupath-extension-biop 3.6.0 API)</title>
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<!-- Generated by javadoc (25) -->
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<title>All Classes and Interfaces (qupath-extension-biop 3.7.0 API)</title>
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
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<meta name="description" content="class index">
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<meta name="generator" content="javadoc/AllClassesIndexWriter">
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<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
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<link rel="stylesheet" type="text/css" href="script-dir/jquery-ui.min.css" title="Style">
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<script type="text/javascript" src="script.js"></script>
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<script type="text/javascript" src="script-dir/jquery-3.7.1.min.js"></script>
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<script type="text/javascript" src="script-dir/jquery-ui.min.js"></script>
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<link rel="stylesheet" type="text/css" href="resource-files/jquery-ui.min.css">
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<link rel="stylesheet" type="text/css" href="resource-files/stylesheet.css">
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<script type="text/javascript" src="script-files/script.js"></script>
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<script type="text/javascript" src="script-files/jquery-3.7.1.min.js"></script>
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</head>
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<body class="all-classes-index-page">
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<script type="text/javascript">var pathtoroot = "./";
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<script type="text/javascript">const pathtoroot = "./";
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loadScripts(document, 'script');</script>
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<noscript>
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<div>JavaScript is disabled on your browser.</div>
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</noscript>
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<header role="banner" class="flex-header">
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<header role="banner">
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<nav role="navigation">
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<!-- ========= START OF TOP NAVBAR ======= -->
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<div class="top-nav" id="navbar-top"><button id="navbar-toggle-button" aria-controls="navbar-top" aria-expanded="false" aria-label="Toggle navigation links"><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span></button>
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<div class="top-nav" id="navbar-top">
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<div class="nav-content">
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<div class="nav-menu-button"><button id="navbar-toggle-button" aria-controls="navbar-top" aria-expanded="false" aria-label="Toggle navigation links"><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span></button></div>
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<div class="skip-nav"><a href="#skip-navbar-top" title="Skip navigation links">Skip navigation links</a></div>
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<ul id="navbar-top-firstrow" class="nav-list" title="Navigation">
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<li><a href="index.html">Overview</a></li>
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<li>Package</li>
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<li>Class</li>
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<li><a href="overview-tree.html">Tree</a></li>
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<li><a href="index-all.html">Index</a></li>
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<li><a href="search.html">Search</a></li>
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<li><a href="help-doc.html#all-classes">Help</a></li>
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</ul>
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</div>
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</div>
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<div class="sub-nav">
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<div id="navbar-sub-list"></div>
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<div class="nav-list-search"><a href="search.html">SEARCH</a>
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<input type="text" id="search-input" disabled placeholder="Search">
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<input type="reset" id="reset-button" disabled value="reset">
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<div class="nav-content">
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<ol class="sub-nav-list"></ol>
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<div class="nav-list-search"><input type="text" id="search-input" disabled placeholder="Search documentation (type /)" aria-label="Search in documentation" autocomplete="off" spellcheck="false"><input type="reset" id="reset-search" disabled value="Reset"></div>
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</div>
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</div>
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<!-- ========= END OF TOP NAVBAR ========= -->
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</header>
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<div class="main-grid">
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<main role="main">
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<h1 title="All Classes and Interfaces" class="title">All Classes and Interfaces</h1>
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<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="qupath/ext/biop/utils/Channels.html" title="class in qupath.ext.biop.utils">Channels</a></div>
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<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
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<div class="block">Channels class to handle loading and saving channel settings
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It can modify channels based on either a simple text file or a string of the type
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position, name, color, minDisplay, maxDisplay
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eg.</div>
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It can modify channels based on either a simple text file or a string of the type
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position, name, color, minDisplay, maxDisplay
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eg.</div>
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</div>
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<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="qupath/ext/biop/ml/ObjectClassifierValidation.html" title="class in qupath.ext.biop.ml">ObjectClassifierValidation</a></div>
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<div class="col-last even-row-color all-classes-table all-classes-table-tab2">&nbsp;</div>
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</div>
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</main>
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</div>
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</div>
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</body>
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</html>

‎docs/allpackages-index.html‎

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<!DOCTYPE HTML>
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<html lang="en">
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<head>
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<!-- Generated by javadoc (21) -->
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<title>All Packages (qupath-extension-biop 3.6.0 API)</title>
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<!-- Generated by javadoc (25) -->
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<title>All Packages (qupath-extension-biop 3.7.0 API)</title>
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
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<meta name="description" content="package index">
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<meta name="generator" content="javadoc/AllPackagesIndexWriter">
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<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
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<link rel="stylesheet" type="text/css" href="script-dir/jquery-ui.min.css" title="Style">
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<script type="text/javascript" src="script.js"></script>
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<script type="text/javascript" src="script-dir/jquery-3.7.1.min.js"></script>
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<script type="text/javascript" src="script-dir/jquery-ui.min.js"></script>
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<link rel="stylesheet" type="text/css" href="resource-files/jquery-ui.min.css">
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<link rel="stylesheet" type="text/css" href="resource-files/stylesheet.css">
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<script type="text/javascript" src="script-files/script.js"></script>
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<script type="text/javascript" src="script-files/jquery-3.7.1.min.js"></script>
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<script type="text/javascript" src="script-files/jquery-ui.min.js"></script>
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</head>
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<body class="all-packages-index-page">
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<script type="text/javascript">var pathtoroot = "./";
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<script type="text/javascript">const pathtoroot = "./";
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loadScripts(document, 'script');</script>
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<noscript>
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</noscript>
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<div class="flex-box">
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<header role="banner" class="flex-header">
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<header role="banner">
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<nav role="navigation">
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<!-- ========= START OF TOP NAVBAR ======= -->
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<div class="top-nav" id="navbar-top"><button id="navbar-toggle-button" aria-controls="navbar-top" aria-expanded="false" aria-label="Toggle navigation links"><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span></button>
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<div class="top-nav" id="navbar-top">
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<div class="nav-content">
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<div class="nav-menu-button"><button id="navbar-toggle-button" aria-controls="navbar-top" aria-expanded="false" aria-label="Toggle navigation links"><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span><span class="nav-bar-toggle-icon">&nbsp;</span></button></div>
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<div class="skip-nav"><a href="#skip-navbar-top" title="Skip navigation links">Skip navigation links</a></div>
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<ul id="navbar-top-firstrow" class="nav-list" title="Navigation">
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<li><a href="index.html">Overview</a></li>
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<li>Package</li>
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<li>Class</li>
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<li><a href="overview-tree.html">Tree</a></li>
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<li><a href="index-all.html">Index</a></li>
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<li><a href="search.html">Search</a></li>
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<li><a href="help-doc.html#all-packages">Help</a></li>
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</ul>
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</div>
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</div>
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<div class="sub-nav">
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<div id="navbar-sub-list"></div>
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<div class="nav-list-search"><a href="search.html">SEARCH</a>
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<input type="text" id="search-input" disabled placeholder="Search">
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<input type="reset" id="reset-button" disabled value="reset">
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<div class="nav-content">
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<ol class="sub-nav-list"></ol>
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<div class="nav-list-search"><input type="text" id="search-input" disabled placeholder="Search documentation (type /)" aria-label="Search in documentation" autocomplete="off" spellcheck="false"><input type="reset" id="reset-search" disabled value="Reset"></div>
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</div>
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</div>
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<!-- ========= END OF TOP NAVBAR ========= -->
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</header>
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<div class="flex-content">
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<div class="main-grid">
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<main role="main">
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<h1 title="All&amp;nbsp;Packages" class="title">All&nbsp;Packages</h1>
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</main>
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</div>
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</div>
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</html>

‎docs/copy.svg‎

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