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update javadoc
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‎docs/allclasses-index.html‎

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<html lang="en">
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<title>All Classes and Interfaces (qupath-extension-cellpose 0.11.3 API)</title>
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<title>All Classes and Interfaces (qupath-extension-cellpose 0.12.0 API)</title>
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<meta name="description" content="class index">

‎docs/allpackages-index.html‎

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<title>All Packages (qupath-extension-cellpose 0.11.3 API)</title>
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<title>All Packages (qupath-extension-cellpose 0.12.0 API)</title>
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<meta name="description" content="package index">

‎docs/deprecated-list.html‎

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<title>Deprecated List (qupath-extension-cellpose 0.11.3 API)</title>
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<title>Deprecated List (qupath-extension-cellpose 0.12.0 API)</title>
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‎docs/help-doc.html‎

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<title>API Help (qupath-extension-cellpose 0.11.3 API)</title>
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<title>API Help (qupath-extension-cellpose 0.12.0 API)</title>
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‎docs/index-all.html‎

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<title>Index (qupath-extension-cellpose 0.11.3 API)</title>
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<title>Index (qupath-extension-cellpose 0.12.0 API)</title>
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<meta name="description" content="index">
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</dd>
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<dt><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#cellposeChannels(java.lang.Integer,java.lang.Integer)" class="member-name-link">cellposeChannels(Integer, Integer)</a> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
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<div class="block">Explicitly set the cellpose channels manually.</div>
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<div class="block">Explicitly set the CellPose channels manually.</div>
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</dd>
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<dt><a href="qupath/ext/biop/cellpose/CellposeExtension.html" class="type-name-link" title="class in qupath.ext.biop.cellpose">CellposeExtension</a> - Class in <a href="qupath/ext/biop/cellpose/package-summary.html">qupath.ext.biop.cellpose</a></dt>
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<dd>&nbsp;</dd>
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<dt><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#constrainToParent(boolean)" class="member-name-link">constrainToParent(boolean)</a> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
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<div class="block">If true, constrain nuclei and cells to any parent annotation (default is true).</div>
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<div class="block">If true, display all and entirely the cells intersecting the parent annotation, with a padding.</div>
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<dt><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#constrainToParent(boolean,double)" class="member-name-link">constrainToParent(boolean, double)</a> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
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<div class="block">If true, constrain nuclei and cells to any parent annotation (default is true).</div>
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<div class="block">If true, display all and entirely the cells intersecting the parent annotation, with a padding.</div>
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</dd>
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<dt><a href="qupath/ext/biop/cellpose/Cellpose2D.LogParser.html#CP2" class="member-name-link">CP2</a> - Enum constant in enum class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.LogParser.html" title="enum class in qupath.ext.biop.cellpose">Cellpose2D.LogParser</a></dt>
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<dd>&nbsp;</dd>
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<dd>&nbsp;</dd>
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<dt><a href="qupath/ext/biop/cellpose/Cellpose2D.html#globalPreprocess" class="member-name-link">globalPreprocess</a> - Variable in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.html" title="class in qupath.ext.biop.cellpose">Cellpose2D</a></dt>
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<dd>&nbsp;</dd>
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<dt><a href="qupath/ext/biop/cellpose/Cellpose2D.html#globalPreprocessingProvidedByUser" class="member-name-link">globalPreprocessingProvidedByUser</a> - Variable in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.html" title="class in qupath.ext.biop.cellpose">Cellpose2D</a></dt>
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<dd>&nbsp;</dd>
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<dt><a href="qupath/ext/biop/cellpose/Cellpose2D.html#groundTruthDirectory" class="member-name-link">groundTruthDirectory</a> - Variable in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.html" title="class in qupath.ext.biop.cellpose">Cellpose2D</a></dt>
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<dd>&nbsp;</dd>
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<dt><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#groundTruthDirectory(java.io.File)" class="member-name-link">groundTruthDirectory(File)</a> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
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<div class="block">convenience method? to deactivate cellpose normalization.</div>
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<dt><a href="qupath/ext/biop/cellpose/Cellpose2D.html#normalizeChannelPercentilesGlobalMap" class="member-name-link">normalizeChannelPercentilesGlobalMap</a> - Variable in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.html" title="class in qupath.ext.biop.cellpose">Cellpose2D</a></dt>
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<dd>&nbsp;</dd>
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<dt><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#normalizePercentiles(double,double)" class="member-name-link">normalizePercentiles(double, double)</a> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
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<dt><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#normalizePercentilesGlobal(double,double,double)" class="member-name-link">normalizePercentilesGlobal(double, double, double)</a> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
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<div class="block">Convenience method to call global normalization for the dataset</div>
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<div class="block">Convenience method to call global normalization for the dataset.</div>
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<dt><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#normalizePercentilesGlobal(java.lang.String,double,double,double)" class="member-name-link">normalizePercentilesGlobal(String, double, double, double)</a> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
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<div class="block">Convenience method to call global normalization for each channel.</div>
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<dt><a href="qupath/ext/biop/cellpose/Cellpose2D.html#nThreads" class="member-name-link">nThreads</a> - Variable in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.html" title="class in qupath.ext.biop.cellpose">Cellpose2D</a></dt>
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‎docs/index.html‎

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<h1 class="title">qupath-extension-cellpose 0.12.0 API</h1>
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<div class="caption"><span>Packages</span></div>

‎docs/member-search-index.js‎

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‎docs/overview-summary.html‎

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‎docs/overview-tree.html‎

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<title>Class Hierarchy (qupath-extension-cellpose 0.12.0 API)</title>
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‎docs/qupath/ext/biop/cellpose/Cellpose2D.LogParser.html‎

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<title>Cellpose2D.LogParser (qupath-extension-cellpose 0.11.3 API)</title>
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<title>Cellpose2D.LogParser (qupath-extension-cellpose 0.12.0 API)</title>
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<meta name="description" content="declaration: package: qupath.ext.biop.cellpose, class: Cellpose2D, enum: LogParser">

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