Skip to content

Commit 76cfb13

Browse files
committed
update javadoc
1 parent 12ac0d5 commit 76cfb13

4 files changed

Lines changed: 88 additions & 59 deletions

File tree

docs/deprecated-list.html

Lines changed: 6 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -61,9 +61,13 @@ <h2 title="Contents">Contents</h2>
6161
<div class="summary-table two-column-summary">
6262
<div class="table-header col-first">Method</div>
6363
<div class="table-header col-last">Description</div>
64-
<div class="col-summary-item-name even-row-color"><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#savePredictionImages(boolean)">qupath.ext.biop.spotiflow.SpotiflowBuilder.savePredictionImages<wbr>(boolean)</a></div>
64+
<div class="col-summary-item-name even-row-color"><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#process3d(boolean)">qupath.ext.biop.spotiflow.SpotiflowBuilder.process3d<wbr>(boolean)</a></div>
6565
<div class="col-last even-row-color">
66-
<div class="block">use <a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#cleanTempDir(boolean)"><code>SpotiflowBuilder.cleanTempDir(boolean)</code></a> instead</div>
66+
<div class="block">use <a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#process3d()"><code>SpotiflowBuilder.process3d()</code></a> instead</div>
67+
</div>
68+
<div class="col-summary-item-name odd-row-color"><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#savePredictionImages(boolean)">qupath.ext.biop.spotiflow.SpotiflowBuilder.savePredictionImages<wbr>(boolean)</a></div>
69+
<div class="col-last odd-row-color">
70+
<div class="block">use <a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#cleanTempDir()"><code>SpotiflowBuilder.cleanTempDir()</code></a> instead</div>
6771
</div>
6872
</div>
6973
</div>

docs/index-all.html

Lines changed: 12 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -89,9 +89,9 @@ <h2 class="title" id="I:C">C</h2>
8989
<dd>&nbsp;</dd>
9090
<dt><a href="qupath/ext/biop/spotiflow/Spotiflow.html#cleanTempDir" class="member-name-link">cleanTempDir</a> - Variable in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/Spotiflow.html" title="class in qupath.ext.biop.spotiflow">Spotiflow</a></dt>
9191
<dd>&nbsp;</dd>
92-
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#cleanTempDir(boolean)" class="member-name-link">cleanTempDir(boolean)</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
92+
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#cleanTempDir()" class="member-name-link">cleanTempDir()</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
9393
<dd>
94-
<div class="block">Set input folder to predict spots</div>
94+
<div class="block">clear all files in the tem</div>
9595
</dd>
9696
<dt><a href="qupath/ext/biop/spotiflow/Spotiflow.html#clearAllChildObjects" class="member-name-link">clearAllChildObjects</a> - Variable in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/Spotiflow.html" title="class in qupath.ext.biop.spotiflow">Spotiflow</a></dt>
9797
<dd>&nbsp;</dd>
@@ -118,7 +118,7 @@ <h2 class="title" id="I:D">D</h2>
118118
</dd>
119119
<dt><a href="qupath/ext/biop/spotiflow/Spotiflow.html#disableGPU" class="member-name-link">disableGPU</a> - Variable in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/Spotiflow.html" title="class in qupath.ext.biop.spotiflow">Spotiflow</a></dt>
120120
<dd>&nbsp;</dd>
121-
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#disableGPU(boolean)" class="member-name-link">disableGPU(boolean)</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
121+
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#disableGPU()" class="member-name-link">disableGPU()</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
122122
<dd>
123123
<div class="block">Forces using CPU instead of GPU</div>
124124
</dd>
@@ -210,9 +210,15 @@ <h2 class="title" id="I:P">P</h2>
210210
<dd>&nbsp;</dd>
211211
<dt><a href="qupath/ext/biop/spotiflow/Spotiflow.html#process3d" class="member-name-link">process3d</a> - Variable in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/Spotiflow.html" title="class in qupath.ext.biop.spotiflow">Spotiflow</a></dt>
212212
<dd>&nbsp;</dd>
213+
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#process3d()" class="member-name-link">process3d()</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
214+
<dd>
215+
<div class="block">Allows to process all slices of 3D stack.</div>
216+
</dd>
213217
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#process3d(boolean)" class="member-name-link">process3d(boolean)</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
214218
<dd>
215-
<div class="block">Allows to process all slices</div>
219+
<div class="deprecation-block"><span class="deprecated-label">Deprecated.</span>
220+
<div class="deprecation-comment">use <a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#process3d()"><code>SpotiflowBuilder.process3d()</code></a> instead</div>
221+
</div>
216222
</dd>
217223
</dl>
218224
<h2 class="title" id="I:Q">Q</h2>
@@ -238,10 +244,10 @@ <h2 class="title" id="I:S">S</h2>
238244
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#savePredictionImages(boolean)" class="member-name-link">savePredictionImages(boolean)</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
239245
<dd>
240246
<div class="deprecation-block"><span class="deprecated-label">Deprecated.</span>
241-
<div class="deprecation-comment">use <a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#cleanTempDir(boolean)"><code>SpotiflowBuilder.cleanTempDir(boolean)</code></a> instead</div>
247+
<div class="deprecation-comment">use <a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#cleanTempDir()"><code>SpotiflowBuilder.cleanTempDir()</code></a> instead</div>
242248
</div>
243249
</dd>
244-
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#saveTempImagesAsOmeZarr(boolean)" class="member-name-link">saveTempImagesAsOmeZarr(boolean)</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
250+
<dt><a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html#saveTempImagesAsOmeZarr()" class="member-name-link">saveTempImagesAsOmeZarr()</a> - Method in class qupath.ext.biop.spotiflow.<a href="qupath/ext/biop/spotiflow/SpotiflowBuilder.html" title="class in qupath.ext.biop.spotiflow">SpotiflowBuilder</a></dt>
245251
<dd>
246252
<div class="block">True to save images in the temp folder as OME-Zarr files.</div>
247253
</dd>

0 commit comments

Comments
 (0)