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Frontier: User Early Access Docs (#3795)
Update docs after today's webinar.
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Docs/source/install/hpc/frontier.rst

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@@ -13,29 +13,29 @@ Introduction
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If you are new to this system, **please see the following resources**:
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* `Crusher user guide <https://docs.olcf.ornl.gov/systems/crusher_quick_start_guide.html>`_
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* Batch system: `Slurm <https://docs.olcf.ornl.gov/systems/crusher_quick_start_guide.html#running-jobs>`_
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* `Production directories <https://docs.olcf.ornl.gov/data/index.html#data-storage-and-transfers>`_:
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* `Crusher user guide <https://docs.olcf.ornl.gov/systems/frontier_user_guide.html>`_
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* Batch system: `Slurm <https://docs.olcf.ornl.gov/systems/frontier_user_guide.html#running-jobs>`_
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* `Production directories <https://docs.olcf.ornl.gov/systems/frontier_user_guide.html#data-and-storage>`_:
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* ``$PROJWORK/$proj/``: shared with all members of a project, purged every 90 days (recommended)
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* ``$MEMBERWORK/$proj/``: single user, purged every 90 days (usually smaller quota)
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* ``$WORLDWORK/$proj/``: shared with all users, purged every 90 days
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* ``$MEMBERWORK/$proj/``: single user, purged every 90 days (usually smaller quota, 50TB default quota)
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* ``$WORLDWORK/$proj/``: shared with all users, purged every 90 days (50TB default quota)
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* Note that the ``$HOME`` directory is mounted as read-only on compute nodes.
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That means you cannot run in your ``$HOME``.
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It's default quota is 50GB.
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Note: the Orion lustre filesystem on Frontier and the older Alpine GPFS filesystem on Summit are not mounted on each others machines.
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Use `Globus <https://www.globus.org>`__ to transfer data between them if needed.
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Installation
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------------
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Use the following commands to download the WarpX source code and switch to the correct branch.
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**You have to do this on Summit/OLCF Home/etc. since Frontier cannot connect directly to the internet**:
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Use the following commands to download the WarpX source code and switch to the correct branch:
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.. code-block:: bash
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git clone https://github.com/ECP-WarpX/WarpX.git $HOME/src/warpx
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git clone https://github.com/AMReX-Codes/amrex.git $HOME/src/amrex
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git clone https://github.com/ECP-WarpX/picsar.git $HOME/src/picsar
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git clone -b 0.14.5 https://github.com/openPMD/openPMD-api.git $HOME/src/openPMD-api
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To enable HDF5, work-around the broken ``HDF5_VERSION`` variable (empty) in the Cray PE by commenting out the following lines in ``$HOME/src/openPMD-api/CMakeLists.txt``:
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https://github.com/openPMD/openPMD-api/blob/0.14.5/CMakeLists.txt#L216-L220
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.. warning::
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May 16th, 2022 (OLCFHELP-6888):
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There is a caching bug in Libfrabric that causes WarpX simulations to occasionally hang on Frontier on more than 1 node.
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There is a caching bug in Libfabric that causes WarpX simulations to occasionally hang on Frontier on more than 1 node.
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As a work-around, please export the following environment variable in your job scripts until the issue is fixed:
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