BRAINSTools/.github/workflows/build.yml at main · BRAINSia/BRAINSTools · GitHub

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name: CI

on:
  push:
    branches: [ main ]
  pull_request:
    branches: [ main ]

jobs:
  build:
    name: ${{ matrix.config.name }}
    runs-on: ${{ matrix.config.os }}
    timeout-minutes: 360  # Added timeout
    strategy:
      fail-fast: false
      matrix:
        config:
          - {
            name: "Ubuntu Latest GCC",
            os: ubuntu-latest,
            cc: "gcc",
            cxx: "g++",
            parallel: "$(nproc)"
          }
          - {
            name: "macOS Latest Clang",
            os: macos-latest,
            cc: "clang",
            cxx: "clang++",
            parallel: "$(sysctl -n hw.ncpu)"
          }
#          - {
#            name: "Windows Latest MSVC",
#            os: windows-latest,
#            cc: "cl",
#            cxx: "cl",
#            parallel: "$env:NUMBER_OF_PROCESSORS"
#          }

    steps:
      - uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.12'

      - name: Install Dependencies (Ubuntu)
        if: matrix.config.os == 'ubuntu-latest'
        run: |
          sudo apt-get update
          sudo apt-get install -y ninja-build

      - name: Install Dependencies (macOS)
        if: matrix.config.os == 'macos-latest'
        run: |
          brew install ninja

      - name: Install Dependencies (Windows)
        if: matrix.config.os == 'windows-latest'
        run: |
          choco install ninja

      - name: Configure CMake
        shell: bash
        run: |
          cmake -B build -G Ninja \
            -DCMAKE_C_COMPILER=${{ matrix.config.cc }} \
            -DCMAKE_CXX_COMPILER=${{ matrix.config.cxx }} \
            -DCMAKE_CXX_STANDARD:STRING=17 \
            ${{ matrix.config.os != 'windows-latest' && '-DCMAKE_CXX_FLAGS="-mtune=native -march=native"' || '' }} \
            ${{ matrix.config.os != 'windows-latest' && '-DCMAKE_C_FLAGS="-mtune=native -march=native"' || '' }} \
            -DCMAKE_BUILD_TYPE=Release \
            -DEXTERNAL_PROJECT_BUILD_TYPE:STRING=Release \
            -DBUILD_TESTING=ON \
            -DBUILD_SHARED_LIBS=ON \
            -DBRAINSTools_REQUIRES_VTK=OFF \
            -DUSE_BRAINSABC:BOOL=OFF \
            -DUSE_BRAINSCreateLabelMapFromProbabilityMaps:BOOL=OFF \
            -DUSE_BRAINSDWICleanup:BOOL=OFF \
            -DUSE_BRAINSInitializedControlPoints:BOOL=OFF \
            -DUSE_BRAINSLabelStats:BOOL=OFF \
            -DUSE_BRAINSLandmarkInitializer:BOOL=OFF \
            -DUSE_BRAINSMultiModeSegment:BOOL=OFF \
            -DUSE_BRAINSMultiSTAPLE:BOOL=OFF \
            -DUSE_BRAINSMush:BOOL=OFF \
            -DUSE_BRAINSPosteriorToContinuousClass:BOOL=OFF \
            -DUSE_BRAINSResample:BOOL=ON \
            -DUSE_BRAINSROIAuto:BOOL=OFF \
            -DUSE_BRAINSSnapShotWriter:BOOL=OFF \
            -DUSE_BRAINSStripRotation:BOOL=OFF \
            -DUSE_BRAINSTransformConvert:BOOL=OFF \
            -DUSE_ConvertBetweenFileFormats:BOOL=OFF \
            -DUSE_ImageCalculator:BOOL=OFF \
            -DUSE_ReferenceAtlas:BOOL=OFF \
            -DBRAINSTools_BUILD_DICOM_SUPPORT:BOOL=OFF \
            -DUSE_DWIConvert:BOOL=OFF

#           Disable testing that requires VTK
#           -DBRAINSTools_BUILD_DICOM_SUPPORT:BOOL=OFF \
#           -DUSE_DWIConvert:BOOL=OFF

      - name: Build
        shell: bash
        run: cmake --build build --config Release --parallel ${{ matrix.config.parallel }}

      - name: Clean build/BRAINSTools-Release-EPRelease-build
        working-directory: build/BRAINSTools-Release-EPRelease-build
        shell: bash
        run: ninja clean

      - name: ExperimentalStart
        working-directory: build/BRAINSTools-Release-EPRelease-build
        shell: bash
        run: ctest -D ExperimentalStart

      - name: ExperimentalConfigure
        working-directory: build/BRAINSTools-Release-EPRelease-build
        shell: bash
        run: ctest -D ExperimentalConfigure

      - name: ExperimentalBuild
        working-directory: build/BRAINSTools-Release-EPRelease-build
        shell: bash
        run: ctest -D ExperimentalBuild -j ${{ matrix.config.parallel }}

      - name: ExperimentalTest
        working-directory: build/BRAINSTools-Release-EPRelease-build
        shell: bash
        run: ctest -D ExperimentalTest --schedule-random --output-on-failure -j ${{ matrix.config.parallel }}

      - name: ExperimentalSubmit
        working-directory: build/BRAINSTools-Release-EPRelease-build
        shell: bash
        run: ctest -D ExperimentalSubmit

      - name: Upload Build Logs
        uses: actions/upload-artifact@v4
        if: always()  # Changed from failure() to always()
        with:
          name: build-logs-${{ matrix.config.name }}
          path: |
            build/CMakeFiles/CMakeOutput.log
            build/CMakeFiles/CMakeError.log
            build/Testing/Temporary/LastTest.log