From 2be436dee99cc1619ae1a63d64d0b855d6018a00 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:28:01 +0100 Subject: [PATCH 01/15] Split Initial config into projects + Configuration.json migration into initial configs --- relecov_tools/conf/initial_config.yaml | 132 ------------------------- 1 file changed, 132 deletions(-) delete mode 100644 relecov_tools/conf/initial_config.yaml diff --git a/relecov_tools/conf/initial_config.yaml b/relecov_tools/conf/initial_config.yaml deleted file mode 100644 index f678928bc..000000000 --- a/relecov_tools/conf/initial_config.yaml +++ /dev/null @@ -1,132 +0,0 @@ -# THIS INITIAL CONFIG SHOULD BE SET AFTER INSTALLATION -# MAKE A COPY OF THIS FILE IN YOUR HOME AND CONFIGURE IT TO YOUR NEEDS -# THEN RUN: relecov-tools add-extra-config --config_file path/to/initial_config_copy.yaml -# NOTE: Each key in 'modules_outpath' must match with a Command as listed with `relecov-tools --help` (but with '_' instead of '-') -logs_config: - default_outpath: - /tmp/ - modules_outpath: - wrapper: /tmp/wrapper - download: /tmp/download - pipeline_manager: /tmp/pipeline_manager - read_bioinfo_metadata: /tmp/read_bioinfo_metadata - -# REQUIRED: send-mail module -mail_sender: - delivery_template_path_file: /path/templates/ - email_host: host - email_port: port - email_host_user: email@gmail.com - email_use_tls: True - yaml_cred_path: /path/credentials.yml - institutions_guide_path: /path/contacts.json - -download: - user: '' - password: '' - conf_file: '' - download_option: '' - output_dir: '' - target_folders: [] - subfolder: RELECOV - -read_lab_metadata: - metadata_file: '' - sample_list_file: '' - output_dir: '' - files_folder: '' - -validate: - json_file: '' - json_schema_file: '' - metadata: '' - output_dir: '' - excel_sheet: '' - upload_files: false - logsum_file: '' - -map: - destination_schema: '' - json_file: '' - origin_schema: '' - output_dir: '' - schema_file: '' - -upload_to_ena: - user: '' - password: '' - center: '' - ena_json: '' - template_path: '' - action: ADD - dev: false - upload_fastq: false - metadata_types: [] - output_dir: '' - -upload_to_gisaid: - user: '' - password: '' - client_id: '' - token: '' - gisaid_json: '' - input_path: '' - output_dir: '' - frameshift: '' - proxy_config: '' - single: false - gzip: false - -update_db: - user: '' - password: '' - json: '' - type: '' - platform: '' - server_url: '' - full_update: false - long_table: '' - -read_bioinfo_metadata: - json_file: '' - input_folder: '' - output_dir: '' - software_name: '' - update: false - -metadata_homogeneizer: - institution: '' - directory: '' - output_dir: '' - -pipeline_manager: - input: '' - templates_root: '' - config: '' - output_dir: '' - folder_names: [] - -build_schema: - input_file: '' - schema_base: '' - draft_version: '' - diff: false - version: '' - project: '' - non_interactive: false - output_dir: '' - -logs_to_excel: - lab_code: '' - output_dir: '' - files: [] - -wrapper: - output_dir: '' - -upload_results: - user: '' - password: '' - batch_id: '' - template_path: '' - project: Relecov From 4209bd18a82fcba57becd6048a840ff50ece9363 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:29:02 +0100 Subject: [PATCH 02/15] Update relecov_schema.json + Add new EQA schema --- .../read_lab_metadata_heading_default.json | 57 + relecov_tools/schema/relecov_schema.json | 4428 ++++++++--------- relecov_tools/schema/relecov_schema_EQA.json | 1665 +++++++ 3 files changed, 3917 insertions(+), 2233 deletions(-) create mode 100644 relecov_tools/conf/read_lab_metadata_heading_default.json create mode 100644 relecov_tools/schema/relecov_schema_EQA.json diff --git a/relecov_tools/conf/read_lab_metadata_heading_default.json b/relecov_tools/conf/read_lab_metadata_heading_default.json new file mode 100644 index 000000000..d85646b27 --- /dev/null +++ b/relecov_tools/conf/read_lab_metadata_heading_default.json @@ -0,0 +1,57 @@ +[ + "Organism", + "Public Health sample id (SIVIRA)", + "Sample ID given by originating laboratory", + "Sample ID given by the submitting laboratory", + "Sample ID given in the microbiology lab", + "Sample ID given if multiple rna-extraction or passages", + "Sample ID given for sequencing", + "ENA Sample ID", + "GISAID Virus Name", + "GISAID id", + "Originating Laboratory", + "Submitting Institution", + "Sequencing Institution", + "Sample Collection Date", + "Sample Received Date", + "Purpose of sampling", + "Biological Sample Storage Condition", + "Specimen source", + "Environmental Material", + "Environmental System", + "Collection Device", + "Host", + "Host Age Years", + "Host Age Months", + "Host Gender", + "Vaccinated", + "Specific medication for treatment or prophylaxis", + "Hospitalization", + "Admission to intensive care unit", + "Death", + "Immunosuppression", + "Sequencing Date", + "Nucleic acid extraction protocol", + "Commercial All-in-one library kit", + "Library Preparation Kit", + "Enrichment Protocol", + "If Enrichment Protocol Is Other, Specify", + "Enrichment panel/assay", + "If Enrichment panel/assay Is Other, Specify", + "Enrichment panel/assay version", + "Number Of Samples In Run", + "Runid", + "Sequencing Instrument Model", + "Flowcell Kit", + "Source material", + "Capture method", + "Sequencing technique", + "Library Layout", + "Gene Name 1", + "Diagnostic Pcr Ct Value 1", + "Gene Name 2", + "Diagnostic Pcr Ct Value-2", + "Authors", + "Sequence file R1", + "Sequence file R2" +] diff --git a/relecov_tools/schema/relecov_schema.json b/relecov_tools/schema/relecov_schema.json index 713996b7f..e4aa02f85 100644 --- a/relecov_tools/schema/relecov_schema.json +++ b/relecov_tools/schema/relecov_schema.json @@ -7,2593 +7,2591 @@ "type": "object", "properties": { "organism": { - "$ref": "#/$defs/enums/organism", + "header": "Y", + "label": "Organism", + "ontology": "SNOMED:410607006", + "description": "Taxonomic species name of the organism.", "examples": [ "Severe acute respiratory syndrome coronavirus 2 [NCBITaxon:2697049]" ], - "ontology": "SNOMED:410607006", - "type": "string", - "description": "Taxonomic species name of the organism.", + "$ref": "#/$defs/enums/organism", "classification": "Sample collection and processing", - "label": "Organism", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "public_health_sample_id": { + "header": "Y", + "label": "Public Health sample id (SIVIRA)", + "ontology": "0", + "description": "Identificator provided by the Public Health system", "examples": [ "2022CEU03926" ], - "ontology": "0", - "type": "string", - "description": "Identificator provided by the Public Health system.", "classification": "Sample collection and processing", - "label": "Public Health sample id (SIVIRA)", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "collecting_lab_sample_id": { + "header": "Y", + "label": "Sample ID given by originating laboratory", + "ontology": "GENEPIO:0001123", + "description": "Sample ID provided by the laboratory that collects the sample, the collecting institution is requested in column L of this file", "examples": [ - "1197677" + 1197677 ], - "ontology": "GENEPIO:0001123", - "type": "string", - "description": "Sample ID provided by the laboratory that collects the sample, the collecting institution is requested in column L of this file.", "classification": "Database Identifiers", - "label": "Sample ID given by originating laboratory", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "submitting_lab_sample_id": { + "header": "Y", + "label": "Sample ID given by the submitting laboratory", + "ontology": "GENEPIO:0001148", + "description": "Sample ID provided by the submitting laboratory that delivers the sample. The submitting laboratory is requested in column M", "examples": [ - "202203144" + 202203144 ], - "ontology": "GENEPIO:0001148", - "type": "string", - "description": "Sample ID provided by the submitting laboratory that delivers the sample. The submitting laboratory is requested in column M.", "classification": "Sequencing", - "label": "Sample ID given by the submitting laboratory", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "microbiology_lab_sample_id": { + "header": "Y", + "label": "Sample ID given in the microbiology lab", + "ontology": "0", + "description": "Sample identification provided by the microbiology laboratory", "examples": [ - "220624" + 220624 ], - "ontology": "0", - "type": "string", - "description": "Sample identification provided by the microbiology laboratory.", "classification": "Sample collection and processing", - "label": "Sample ID given in the microbiology lab", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "isolate_sample_id": { + "header": "Y", + "label": "Sample ID given if multiple rna-extraction or passages", + "ontology": "GENEPIO:0001644", + "description": "Sample identification provided if multiple rna-extraction or passages", "examples": [ - "220624.1" + 220624.1 ], - "ontology": "GENEPIO:0001644", - "type": "string", - "description": "Sample identification provided if multiple rna-extraction or passages.", "classification": "Database Identifiers", - "label": "Sample ID given if multiple rna-extraction or passages", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "sequencing_sample_id": { + "header": "Y", + "label": "Sample ID given for sequencing", + "ontology": "GENEPIO:0000079", + "description": "ID assigned to the sample for sequencing. It must be a unique identifier. If the sample is re-sequenced, the run number should be included, preceded by a dot.", "examples": [ "SEQ_220624 (SEQ_220624.2)" ], - "ontology": "GENEPIO:0000079", - "type": "string", - "description": "ID assigned to the sample for sequencing. It must be a unique identifier. If the sample is re-sequenced, the run number should be included, preceded by a dot.", "classification": "Database Identifiers", - "label": "Sample ID given for sequencing", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "ena_sample_accession": { + "header": "Y", + "label": "ENA Sample ID", + "ontology": "GENEPIO:0001139", + "description": "ID generated when uploading the sample to ENA", "examples": [ "ERS123456" ], - "ontology": "GENEPIO:0001139", + "classification": "Public databases", "type": "string", "identifiers_org_prefix": "ena.embl", - "description": "ID generated when uploading the sample to ENA.", - "classification": "Public databases", - "label": "ENA Sample ID", - "fill_mode": "batch", - "header": "Y" + "fill_mode": "batch" }, "gisaid_virus_name": { + "header": "Y", + "label": "GISAID Virus Name", + "ontology": "GENEPIO:0100282", + "description": "The user-defined GISAID virus name assigned to the sequence.", "examples": [ "hCoV-19/Spain/CT-HUJT-RB31776/2022" ], - "ontology": "GENEPIO:0100282", - "type": "string", - "description": "The user-defined GISAID virus name assigned to the sequence.", "classification": "Public databases", - "label": "GISAID Virus Name", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "gisaid_accession_id": { + "header": "Y", + "label": "GISAID id", + "ontology": "NCIT:C180324", + "description": "GISAID sequence ID.", "examples": [ "EPI_ISL_11222687" ], - "ontology": "NCIT:C180324", - "type": "string", - "description": "GISAID sequence ID.", "classification": "Public databases", - "label": "GISAID id", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "collecting_institution": { - "$ref": "#/$defs/enums/collecting_institution", + "header": "Y", + "label": "Originating Laboratory", + "ontology": "GENEPIO:0001153", + "description": "The name of the agency/institution that collected the sample.", "examples": [ "Hospital Universitario de Ceuta" ], - "ontology": "GENEPIO:0001153", - "type": "string", - "description": "The name of the agency/institution that collected the sample.", + "$ref": "#/$defs/enums/collecting_institution", "classification": "Sample collection and processing", - "label": "Originating Laboratory", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "submitting_institution": { - "$ref": "#/$defs/enums/submitting_institution", + "header": "Y", + "label": "Submitting Institution", + "ontology": "GENEPIO:0001159", + "description": "The name of the agency that submitted the sequence to the platform.", "examples": [ "Instituto de Salud Carlos III " ], - "ontology": "GENEPIO:0001159", - "type": "string", - "description": "The name of the agency that submitted the sequence to the platform.", + "$ref": "#/$defs/enums/submitting_institution", "classification": "Sample collection and processing", - "label": "Submitting Institution", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "sequencing_institution": { - "$ref": "#/$defs/enums/sequencing_institution", + "header": "Y", + "label": "Sequencing Institution", + "ontology": "GENEPIO:0100416", + "description": "The name of the agency that generated the sequence", "examples": [ "Instituto de Salud Carlos III " ], - "ontology": "GENEPIO:0100416", - "type": "string", - "description": "The name of the agency that generated the sequence.", + "$ref": "#/$defs/enums/sequencing_institution", "classification": "Sequencing", - "label": "Sequencing Institution", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "sample_collection_date": { + "header": "Y", + "label": "Sample Collection Date", + "ontology": "SNOMED:399445004", + "description": "The date on which the sample was collected. YYYY-MM-DD", "examples": [ "2021-04-13" ], - "ontology": "SNOMED:399445004", + "classification": "Sample collection and processing", "type": "string", "format": "date", - "description": "The date on which the sample was collected. YYYY-MM-DD.", - "classification": "Sample collection and processing", - "label": "Sample Collection Date", - "fill_mode": "sample", - "header": "Y" + "fill_mode": "sample" }, "sample_received_date": { + "header": "Y", + "label": "Sample Received Date", + "ontology": "SNOMED:281271004", + "description": "The date on which the sample was received. YYYY-MM-DD", "examples": [ "2021-05-13" ], - "ontology": "SNOMED:281271004", + "classification": "Sample collection and processing", "type": "string", "format": "date", - "description": "The date on which the sample was received. YYYY-MM-DD.", - "classification": "Sample collection and processing", - "label": "Sample Received Date", - "fill_mode": "sample", - "header": "Y" + "fill_mode": "sample" }, "purpose_sampling": { - "$ref": "#/$defs/enums/purpose_sampling", + "header": "Y", + "label": "Purpose of sampling", + "ontology": "GENEPIO:0001198", + "description": "The reason that the sample was collected.", "examples": [ "Surveillance" ], - "ontology": "GENEPIO:0001198", - "type": "string", - "description": "The reason that the sample was collected.", + "$ref": "#/$defs/enums/purpose_sampling", "classification": "Sample collection and processing", - "label": "Purpose of sampling", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "sample_storage_conditions": { + "header": "Y", + "label": "Biological Sample Storage Condition", + "ontology": "NCIT:C115535", + "description": "Conditions under which the sample is stored", "examples": [ "-80ºC" ], - "ontology": "NCIT:C115535", - "type": "string", - "description": "Conditions under which the sample is stored.", "classification": "Sample collection and processing", - "label": "Biological Sample Storage Condition", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "specimen_source": { - "$ref": "#/$defs/enums/specimen_source", + "header": "Y", + "label": "Specimen source", + "ontology": "SNOMED:703065002", + "description": "Source of the specimen, merge of anatomical_part, anatomical_material, body_product and collection method.", "examples": [ "Nasopharynx exudate" ], - "ontology": "SNOMED:703065002", - "type": "string", - "description": "Source of the specimen, merge of anatomical_part, anatomical_material, body_product and collection method.", + "$ref": "#/$defs/enums/specimen_source", "classification": "Sample collection and processing", - "label": "Specimen source", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "environmental_material": { - "$ref": "#/$defs/enums/environmental_material", + "header": "Y", + "label": "Environmental Material", + "ontology": "GENEPIO:0001223", + "description": "A substance obtained from the natural or man-made environment e.g. soil, water, sewage, door handle, bed handrail, face mask.", "examples": [ "Food isolate" ], - "ontology": "GENEPIO:0001223", - "type": "string", - "description": "A substance obtained from the natural or man-made environment e.g. soil, water, sewage, door handle, bed handrail, face mask.", + "$ref": "#/$defs/enums/environmental_material", "classification": "Sample collection and processing", - "label": "Environmental Material", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "environmental_system": { - "$ref": "#/$defs/enums/environmental_system", + "header": "Y", + "label": "Environmental System", + "ontology": "GENEPIO:0001232", + "description": "A data field which describes an environmental location as a site in the natural or built environment.", "examples": [ "Earth surface" ], - "ontology": "GENEPIO:0001232", - "type": "string", - "description": "A data field which describes an environmental location as a site in the natural or built environment.", + "$ref": "#/$defs/enums/environmental_system", "classification": "Sample collection and processing", - "label": "Environmental System", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "collection_device": { - "$ref": "#/$defs/enums/collection_device", + "header": "Y", + "label": "Collection Device", + "ontology": "GENEPIO:0001234", + "description": "A data field which describes the instrument or container used to collect the sample. ", "examples": [ "Swab" ], - "ontology": "GENEPIO:0001234", - "type": "string", - "description": "A data field which describes the instrument or container used to collect the sample.", + "$ref": "#/$defs/enums/collection_device", "classification": "Sample collection and processing", - "label": "Collection Device", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "host_common_name": { - "$ref": "#/$defs/enums/host_common_name", + "header": "Y", + "label": "Host", + "ontology": "GENEPIO:0001386", + "description": "The commonly used name of the host.", "examples": [ "Human" ], - "ontology": "GENEPIO:0001386", - "type": "string", - "description": "The commonly used name of the host.", + "$ref": "#/$defs/enums/host_common_name", "classification": "Host information", - "label": "Host", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "host_age_years": { + "header": "Y", + "label": "Host Age Years", + "ontology": "SNOMED:424144002", + "description": "Age of host at the time of sampling. Age between 3 and 110 years old. Recommended", "examples": [ 55 ], - "ontology": "SNOMED:424144002", + "classification": "Host information", "type": "integer", "minimum": 3, "maximum": 120, - "description": "Age of host at the time of sampling. Age between 3 and 110 years old. Recommended.", - "classification": "Host information", - "label": "Host Age Years", - "fill_mode": "sample", - "header": "Y" + "fill_mode": "sample" }, "host_age_months": { + "header": "Y", + "label": "Host Age Months", + "ontology": "LOINC:LA33639-8", + "description": "ONLY when [Host Age years] < 3. Age of host at the time of sampling. If the age is less than three years indicate in months between 0 and 36. Recommended", "examples": [ 14 ], - "ontology": "LOINC:LA33639-8", + "classification": "Host information", "type": "integer", "minimum": 0, "maximum": 36, - "description": "ONLY when [Host Age years] < 3. Age of host at the time of sampling. If the age is less than three years indicate in months between 0 and 36. Recommended.", - "classification": "Host information", - "label": "Host Age Months", - "fill_mode": "sample", - "header": "Y" + "fill_mode": "sample" }, "host_gender": { - "$ref": "#/$defs/enums/host_gender", + "header": "Y", + "label": "Host Gender", + "ontology": "SNOMED:263495000", + "description": "The gender of the host at the time of sample collection. Recomended", "examples": [ "Female" ], - "ontology": "SNOMED:263495000", - "type": "string", - "description": "The gender of the host at the time of sample collection. Recomended.", + "$ref": "#/$defs/enums/host_gender", "classification": "Host information", - "label": "Host Gender", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "vaccinated": { - "$ref": "#/$defs/enums/vaccinated", + "header": "Y", + "label": "Vaccinated", + "ontology": "NCIT:C28385", + "description": "A status indicating that an individual has received a vaccination.", "examples": [ "Yes" ], - "ontology": "NCIT:C28385", - "type": "string", - "description": "A status indicating that an individual has received a vaccination.", + "$ref": "#/$defs/enums/vaccinated", "classification": "Host information", - "label": "Vaccinated", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "medicated": { - "$ref": "#/$defs/enums/medicated", + "header": "Y", + "label": "Specific medication for treatment or prophylaxis", + "ontology": "SNOMED:18629005", + "description": "Has received medication for the identified treatment or prophylaxis", "examples": [ "Yes" ], - "ontology": "SNOMED:18629005", - "type": "string", - "description": "Has received medication for the identified treatment or prophylaxis.", + "$ref": "#/$defs/enums/medicated", "classification": "Host information", - "label": "Specific medication for treatment or prophylaxis", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "hospitalized": { - "$ref": "#/$defs/enums/hospitalized", + "header": "Y", + "label": "Hospitalization", + "ontology": "LOINC:LA15417-1", + "description": "Whether the patient was admitted to a hospital", "examples": [ "Yes" ], - "ontology": "LOINC:LA15417-1", - "type": "string", - "description": "Whether the patient was admitted to a hospital.", + "$ref": "#/$defs/enums/hospitalized", "classification": "Host information", - "label": "Hospitalization", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "icu_admission": { - "$ref": "#/$defs/enums/icu_admission", + "header": "Y", + "label": "Admission to intensive care unit", + "ontology": "SNOMED:305351004", + "description": "Whether the patient required ICU care during the illness.", "examples": [ "Yes" ], - "ontology": "SNOMED:305351004", - "type": "string", - "description": "Whether the patient required ICU care during the illness.", + "$ref": "#/$defs/enums/icu_admission", "classification": "Host information", - "label": "Admission to intensive care unit", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "death": { - "$ref": "#/$defs/enums/death", + "header": "Y", + "label": "Death", + "ontology": "LOINC:LA7424-0", + "description": "Whether the patient died as a result of the infection.", "examples": [ "No" ], - "ontology": "LOINC:LA7424-0", - "type": "string", - "description": "Whether the patient died as a result of the infection.", + "$ref": "#/$defs/enums/death", "classification": "Host information", - "label": "Death", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "immunosuppressed": { - "$ref": "#/$defs/enums/immunosuppressed", + "header": "Y", + "label": "Immunosuppression", + "ontology": "SNOMED:38013005", + "description": "Whether the patient has a weakened immune system.", "examples": [ "No" ], - "ontology": "SNOMED:38013005", - "type": "string", - "description": "Whether the patient has a weakened immune system.", + "$ref": "#/$defs/enums/immunosuppressed", "classification": "Host information", - "label": "Immunosuppression", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "sequencing_date": { + "header": "Y", + "label": "Sequencing Date", + "ontology": "GENEPIO:0001447", + "description": "The date the sample was sequenced. YYYY-MM-DD", "examples": [ "2022-02-22" ], - "ontology": "GENEPIO:0001447", + "classification": "Sequencing", "type": "string", "format": "date", - "description": "The date the sample was sequenced. YYYY-MM-DD.", - "classification": "Sequencing", - "label": "Sequencing Date", - "fill_mode": "batch", - "header": "Y" + "fill_mode": "batch" }, "nucleic_acid_extraction_protocol": { + "header": "Y", + "label": "Nucleic acid extraction protocol", + "ontology": "OBI_0302884", + "description": "DNA/RNA extraction protocol", "examples": [ "RT-PCR" ], - "ontology": "OBI_0302884", - "type": "string", - "description": "DNA/RNA extraction protocol.", "classification": "Sequencing", - "label": "Nucleic acid extraction protocol", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "all_in_one_library_kit": { - "$ref": "#/$defs/enums/all_in_one_library_kit", + "header": "Y", + "label": "Commercial All-in-one library kit", + "ontology": "GENEPIO:0000085", + "description": "Packaged kits (containing adapters, indexes, enzymes, buffers etc), tailored for specific sequencing workflows, which allow the simplified preparation of sequencing-ready libraries for small genomes, amplicons, and plasmids.", "examples": [ "Ion Xpress" ], - "ontology": "GENEPIO:0000085", - "type": "string", - "description": "Packaged kits (containing adapters, indexes, enzymes, buffers etc), tailored for specific sequencing workflows, which allow the simplified preparation of sequencing-ready libraries for small genomes, amplicons, and plasmids.", + "$ref": "#/$defs/enums/all_in_one_library_kit", "classification": "Sequencing", - "label": "Commercial All-in-one library kit", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "library_preparation_kit": { - "$ref": "#/$defs/enums/library_preparation_kit", + "header": "Y", + "label": "Library Preparation Kit", + "ontology": "NCIT:C182085", + "description": "The name of the DNA library preparation kit used to generate the library being sequenced.", "examples": [ "Illumina DNA Prep Tagmentation" ], - "ontology": "NCIT:C182085", - "type": "string", - "description": "The name of the DNA library preparation kit used to generate the library being sequenced.", + "$ref": "#/$defs/enums/library_preparation_kit", "classification": "Sequencing", - "label": "Library Preparation Kit", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "enrichment_protocol": { - "$ref": "#/$defs/enums/enrichment_protocol", + "header": "Y", + "label": "Enrichment Protocol", + "ontology": "EFO_0009089", + "description": "Type of enrichment protocol", "examples": [ "Amplicon" ], - "ontology": "EFO_0009089", - "type": "string", - "description": "Type of enrichment protocol.", + "$ref": "#/$defs/enums/enrichment_protocol", "classification": "Sequencing", - "label": "Enrichment Protocol", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "if_enrichment_protocol_is_other_specify": { + "header": "Y", + "label": "If Enrichment Protocol Is Other, Specify", + "ontology": "0", + "description": "Specify if you have used another enrichment protocol", "examples": [ "Ultracentrifugation-based viral particle enrichment" ], - "ontology": "0", - "type": "string", - "description": "Specify if you have used another enrichment protocol.", "classification": "Sequencing", - "label": "If Enrichment Protocol Is Other, Specify", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "enrichment_panel": { - "$ref": "#/$defs/enums/enrichment_panel", + "header": "Y", + "label": "Enrichment panel/assay", + "ontology": "NGBO:6000323", + "description": "Commercial or custom panel/assay used for enrichment.", "examples": [ "ARTIC" ], - "ontology": "NGBO:6000323", - "type": "string", - "description": "Commercial or custom panel/assay used for enrichment.", + "$ref": "#/$defs/enums/enrichment_panel", "classification": "Sequencing", - "label": "Enrichment panel/assay", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "if_enrichment_panel_assay_is_other_specify": { + "header": "Y", + "label": "If Enrichment panel/assay Is Other, Specify", + "ontology": "0", + "description": "Specify if you have used another enrichment panel/assay", "examples": [ "Swift Normalase Amplicon SARS-CoV-2 Panel" ], - "ontology": "0", - "type": "string", - "description": "Specify if you have used another enrichment panel/assay.", "classification": "Sequencing", - "label": "If Enrichment panel/assay Is Other, Specify", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "enrichment_panel_version": { - "$ref": "#/$defs/enums/enrichment_panel_version", + "header": "Y", + "label": "Enrichment panel/assay version", + "ontology": "0", + "description": "Version fo the enrichment panel", "examples": [ "ARTIC v4" ], - "ontology": "0", - "type": "string", - "description": "Version fo the enrichment panel.", + "$ref": "#/$defs/enums/enrichment_panel_version", "classification": "Sequencing", - "label": "Enrichment panel/assay version", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "number_of_samples_in_run": { + "header": "Y", + "label": "Number Of Samples In Run", + "ontology": "KISAO_0000326", + "description": "Total count of samples included in the sequencing run.", "examples": [ 96 ], - "ontology": "KISAO_0000326", + "classification": "Sequencing", "type": "integer", "minimum": 1, "maximum": 10000, - "description": "Total count of samples included in the sequencing run.", - "classification": "Sequencing", - "label": "Number Of Samples In Run", - "fill_mode": "batch", - "header": "Y" + "fill_mode": "batch" }, "runID": { + "header": "Y", + "label": "Runid", + "ontology": "NCIT:C117058", + "description": "Unique sequencing run identifier.", "examples": [ "MiSeq_GEN_267_20220208_ICasas" ], - "ontology": "NCIT:C117058", - "type": "string", - "description": "Unique sequencing run identifier.", "classification": "Sequencing", - "label": "Runid", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "sequencing_instrument_model": { - "$ref": "#/$defs/enums/sequencing_instrument_model", + "header": "Y", + "label": "Sequencing Instrument Model", + "ontology": "GENEPIO:0001452", + "description": "The model of the sequencing instrument used.", "examples": [ "Illumina NextSeq 550" ], - "ontology": "GENEPIO:0001452", - "type": "string", - "description": "The model of the sequencing instrument used.", + "$ref": "#/$defs/enums/sequencing_instrument_model", "classification": "Sequencing", - "label": "Sequencing Instrument Model", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "flowcell_kit": { - "$ref": "#/$defs/enums/flowcell_kit", + "header": "Y", + "label": "Flowcell Kit", + "ontology": "0", + "description": "Flowcell sequencer used for sequencing the sample", "examples": [ "NextSeq 500/550 High Output Kit v2.5 (75 Cycles)" ], - "ontology": "0", - "type": "string", - "description": "Flowcell sequencer used for sequencing the sample.", + "$ref": "#/$defs/enums/flowcell_kit", "classification": "Sequencing", - "label": "Flowcell Kit", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "library_source": { - "$ref": "#/$defs/enums/library_source", + "header": "Y", + "label": "Source material", + "ontology": "GENEPIO:0001965", + "description": "Molecule type used to make the library.", "examples": [ "viral RNA source" ], - "ontology": "GENEPIO:0001965", - "type": "string", - "description": "Molecule type used to make the library.", + "$ref": "#/$defs/enums/library_source", "classification": "Sequencing", - "label": "Source material", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "library_selection": { - "$ref": "#/$defs/enums/library_selection", + "header": "Y", + "label": "Capture method", + "ontology": "GENEPIO:0001940", + "description": "Library capture method.", "examples": [ "PCR method" ], - "ontology": "GENEPIO:0001940", - "type": "string", - "description": "Library capture method.", + "$ref": "#/$defs/enums/library_selection", "classification": "Sequencing", - "label": "Capture method", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "library_strategy": { - "$ref": "#/$defs/enums/library_strategy", + "header": "Y", + "label": "Sequencing technique", + "ontology": "GENEPIO:0001973", + "description": "Overall sequencing strategy or approach.", "examples": [ "WGS strategy" ], - "ontology": "GENEPIO:0001973", - "type": "string", - "description": "Overall sequencing strategy or approach.", + "$ref": "#/$defs/enums/library_strategy", "classification": "Sequencing", - "label": "Sequencing technique", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "library_layout": { - "$ref": "#/$defs/enums/library_layout", + "header": "Y", + "label": "Library Layout", + "ontology": "NCIT:C175894", + "description": "Single or paired sequencing configuration", "examples": [ "Single-end" ], - "ontology": "NCIT:C175894", - "type": "string", - "description": "Single or paired sequencing configuration.", + "$ref": "#/$defs/enums/library_layout", "classification": "Sequencing", - "label": "Library Layout", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "gene_name_1": { - "$ref": "#/$defs/enums/gene_name_1", + "header": "Y", + "label": "Gene Name 1", + "ontology": "GENEPIO:0001507", + "description": "The name of the gene used in the diagnostic RT-PCR test.", "examples": [ "ORF1ab" ], - "ontology": "GENEPIO:0001507", - "type": "string", - "description": "The name of the gene used in the diagnostic RT-PCR test.", + "$ref": "#/$defs/enums/gene_name_1", "classification": "Pathogen diagnostic testing", - "label": "Gene Name 1", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "diagnostic_pcr_Ct_value_1": { + "header": "Y", + "label": "Diagnostic Pcr Ct Value 1", + "ontology": "GENEPIO:0001509", + "description": "The Ct value result from a diagnostic SARS-CoV-2 RT-PCR test.", "examples": [ 40 ], - "ontology": "GENEPIO:0001509", + "classification": "Pathogen diagnostic testing", "type": "number", "minimum": 0, "maximum": 40, - "description": "The Ct value result from a diagnostic SARS-CoV-2 RT-PCR test.", - "classification": "Pathogen diagnostic testing", - "label": "Diagnostic Pcr Ct Value 1", - "fill_mode": "batch", - "header": "Y" + "fill_mode": "batch" }, "gene_name_2": { - "$ref": "#/$defs/enums/gene_name_2", + "header": "Y", + "label": "Gene Name 2", + "ontology": "GENEPIO:0001510", + "description": "The name of the gene used in the diagnostic RT-PCR test.", "examples": [ "S" ], - "ontology": "GENEPIO:0001510", - "type": "string", - "description": "The name of the gene used in the diagnostic RT-PCR test.", + "$ref": "#/$defs/enums/gene_name_2", "classification": "Pathogen diagnostic testing", - "label": "Gene Name 2", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "diagnostic_pcr_Ct_value_2": { + "header": "Y", + "label": "Diagnostic Pcr Ct Value-2", + "ontology": "GENEPIO:0001512", + "description": "The cycle threshold (CT) value result from a diagnostic SARS-CoV-2 RT-PCR test.", "examples": [ - "40" + 40 ], - "ontology": "GENEPIO:0001512", + "classification": "Pathogen diagnostic testing", "type": "string", "minimum": 0, "maximum": 40, - "description": "The cycle threshold (CT) value result from a diagnostic SARS-CoV-2 RT-PCR test.", - "classification": "Pathogen diagnostic testing", - "label": "Diagnostic Pcr Ct Value-2", - "fill_mode": "batch", - "header": "Y" + "fill_mode": "batch" }, "authors": { + "header": "Y", + "label": "Authors", + "ontology": "NCIT:C183329", + "description": "A data field which describes the names of individuals contributing to the processes of sample collection, sequence generation, analysis, and data submission.", "examples": [ "Sánchez P" ], - "ontology": "NCIT:C183329", - "type": "string", - "description": "A data field which describes the names of individuals contributing to the processes of sample collection, sequence generation, analysis, and data submission.", "classification": "Public databases", - "label": "Authors", - "fill_mode": "batch", - "header": "Y" + "type": "string", + "fill_mode": "batch" }, "sequence_file_R1": { + "header": "Y", + "label": "Sequence file R1", + "ontology": "GENEPIO:0001476", + "description": "A data field which describes the user-specified filename of the read 1 (r1) file.", "examples": [ "ABC123_S1_L001_R1_001.fastq.gz" ], - "ontology": "GENEPIO:0001476", - "type": "string", - "description": "A data field which describes the user-specified filename of the read 1 (r1) file.", "classification": "Bioinformatics and QC metrics fields", - "label": "Sequence file R1", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "sequence_file_R2": { + "header": "Y", + "label": "Sequence file R2", + "ontology": "GENEPIO:0001477", + "description": "A data field which describes the user-specified filename of the read 2 (r2) file. ", "examples": [ "ABC123_S1_L001_R2_002.fastq.gz" ], - "ontology": "GENEPIO:0001477", - "type": "string", - "description": "A data field which describes the user-specified filename of the read 2 (r2) file.", "classification": "Bioinformatics and QC metrics fields", - "label": "Sequence file R2", - "fill_mode": "sample", - "header": "Y" + "type": "string", + "fill_mode": "sample" }, "unique_sample_id": { + "header": "N", + "label": "Unique identifier", + "ontology": "NCIT:C70663", + "description": "Unique identifier for each sample", "examples": [ "AXM1456" ], - "ontology": "NCIT:C70663", - "type": "string", - "description": "Unique identifier for each sample.", "classification": "Sample collection and processing", - "label": "Unique identifier", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "batch_id": { + "header": "N", + "label": "Batch identifier", + "ontology": "NCIT:C104504", + "description": "Unique identifier for each analysis batch", "examples": [ - "20250506140633" + 20250506140633 ], - "ontology": "NCIT:C104504", - "type": "string", - "description": "Unique identifier for each analysis batch.", "classification": "Sample collection and processing", - "label": "Batch identifier", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "submitting_institution_id": { + "header": "N", + "label": "Submitting Institution Identifier", + "ontology": "NCIT:C81294", + "description": "The Institution identifier that is submitting data or information.", "examples": [ "COD-1111-BU" ], - "ontology": "NCIT:C81294", - "type": "string", - "description": "The Institution identifier that is submitting data or information.", "classification": "Sample collection and processing", - "label": "Submitting Institution Identifier", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "collecting_institution_code_1": { - "examples": [ - "1328021542" - ], + "header": "N", + "label": "CCN", "ontology": "SNOMED:423901009", - "type": "string", "description": "CCN code from the agency/institution that collected the sample.", + "examples": [ + 1328021542 + ], "classification": "Sample collection and processing", - "label": "CCN", - "fill_mode": "sample", - "header": "N" + "type": "string", + "fill_mode": "sample" }, "collecting_institution_code_2": { - "examples": [ - "40059" - ], + "header": "N", + "label": "CODCNH", "ontology": "NCIT:C101703", - "type": "string", "description": "CODCNH code from the agency/institution that collected the sample.", + "examples": [ + 40059 + ], "classification": "Sample collection and processing", - "label": "CODCNH", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "collecting_institution_email": { + "header": "N", + "label": "Originating Laboratory Email", + "ontology": "OBI:0001890", + "description": "The email address of the contact responsible for follow-up regarding the sample.", "examples": [ "johnnyblogs@lab.ca" ], - "ontology": "OBI:0001890", - "type": "string", - "description": "The email address of the contact responsible for follow-up regarding the sample.", "classification": "Sample collection and processing", - "label": "Originating Laboratory Email", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "collecting_institution_address": { + "header": "N", + "label": "Originating Laboratory Address", + "ontology": "GENEPIO:0001158", + "description": "The mailing address of the agency collecting the sample.", "examples": [ "655 Lab St, Vancouver, British Columbia, V5N 2A2, Canada" ], - "ontology": "GENEPIO:0001158", - "type": "string", - "description": "The mailing address of the agency collecting the sample.", "classification": "Sample collection and processing", - "label": "Originating Laboratory Address", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "autonom_cod": { + "header": "N", + "label": "Autonomic Center Code", + "ontology": "GENEPIO:0001803", + "description": "Autonomic center Code", "examples": [ - "11380" + 11380 ], - "ontology": "GENEPIO:0001803", - "type": "string", - "description": "Autonomic center Code.", "classification": "Sample collection and processing", - "label": "Autonomic Center Code", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "submitting_institution_email": { + "header": "N", + "label": "Submitting Institution Email", + "ontology": "GENEPIO:0001165", + "description": "The email address of the contact responsible for follow-up regarding the sequence.", "examples": [ "RespLab@lab.ca" ], - "ontology": "GENEPIO:0001165", - "type": "string", - "description": "The email address of the contact responsible for follow-up regarding the sequence.", "classification": "Sample collection and processing", - "label": "Submitting Institution Email", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "submitting_institution_address": { + "header": "N", + "label": "Submitting Institution Address", + "ontology": "GENEPIO:0001167", + "description": "The mailing address of the agency submitting the sequence.", "examples": [ "123 Sunnybrooke St, Toronto, Ontario, M4P 1L6, Canada" ], - "ontology": "GENEPIO:0001167", - "type": "string", - "description": "The mailing address of the agency submitting the sequence.", "classification": "Sample collection and processing", - "label": "Submitting Institution Address", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_country": { - "$ref": "#/$defs/enums/geo_loc_country", + "header": "N", + "label": "Country", + "ontology": "GENEPIO:0001181", + "description": "The country of origin of the sample.", "examples": [ "South Africa [GAZ:00001094]" ], - "ontology": "GENEPIO:0001181", - "type": "string", - "description": "The country of origin of the sample.", + "$ref": "#/$defs/enums/geo_loc_country", "classification": "Sample collection and processing", - "label": "Country", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_state": { - "$ref": "#/$defs/enums/geo_loc_state", + "header": "N", + "label": "Autonomic Community", + "ontology": "GENEPIO:0001185", + "description": "The state/province/territory of origin of the sample.", "examples": [ "Andalucía" ], - "ontology": "GENEPIO:0001185", - "type": "string", - "description": "The state/province/territory of origin of the sample.", + "$ref": "#/$defs/enums/geo_loc_state", "classification": "Sample collection and processing", - "label": "Autonomic Community", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_state_cod": { - "examples": [ - "1" - ], + "header": "N", + "label": "Autonomic Community Code", "ontology": "NCIT:C218832", - "type": "string", "description": "Official Code of the state/province/territory of origin of the sample.", + "examples": [ + 1 + ], "classification": "Sample collection and processing", - "label": "Autonomic Community Code", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_region": { - "$ref": "#/$defs/enums/geo_loc_region", + "header": "N", + "label": "Province", + "ontology": "NCIT:C25632 ", + "description": "The county/region of origin of the sample.", "examples": [ "Almería" ], - "ontology": "NCIT:C25632 ", - "type": "string", - "description": "The county/region of origin of the sample.", + "$ref": "#/$defs/enums/geo_loc_region", "classification": "Sample collection and processing", - "label": "Province", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_region_cod": { + "header": "N", + "label": "Province Code", + "ontology": 0, + "description": "Official Code of the county/region of origin of the sample.", "examples": [ - "4" + 4 ], - "ontology": "0", - "type": "string", - "description": "Official Code of the county/region of origin of the sample.", "classification": "Sample collection and processing", - "label": "Province Code", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_city": { + "header": "N", + "label": "City", + "ontology": "GENEPIO:0001189", + "description": "The city of origin of the sample.", "examples": [ "Vancouver" ], - "ontology": "GENEPIO:0001189", - "type": "string", - "description": "The city of origin of the sample.", "classification": "Sample collection and processing", - "label": "City", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_city_cod": { + "header": "N", + "label": "City Code", + "ontology": 0, + "description": "Official Code of the city of origin of the sample.", "examples": [ - "40139" + 40139 ], - "ontology": "0", - "type": "string", - "description": "Official Code of the city of origin of the sample.", "classification": "Sample collection and processing", - "label": "City Code", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "post_code": { - "examples": [ - "4120" - ], + "header": "N", + "label": "Postal Code", "ontology": "NCIT:C25621", - "type": "string", "description": "Post Code of the agency/institution that collected the sample.", + "examples": [ + 4120 + ], "classification": "Sample collection and processing", - "label": "Postal Code", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "dep_func": { + "header": "N", + "label": "Functional Dependency", + "ontology": "mesh:D009935", + "description": "The type of entity to which the facility is affiliated", "examples": [ "Servicios O Institutos De Salud De Las Comunidades Autónomas" ], - "ontology": "mesh:D009935", - "type": "string", - "description": "The type of entity to which the facility is affiliated.", "classification": "Sample collection and processing", - "label": "Functional Dependency", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "center_class_code": { + "header": "N", + "label": "Center Class Code", + "ontology": "NCIT:C93878", + "description": "Official code of Institution’s functional classification or primary service purpose", "examples": [ "C11" ], - "ontology": "NCIT:C93878", - "type": "string", - "description": "Official code of Institution’s functional classification or primary service purpose.", "classification": "Sample collection and processing", - "label": "Center Class Code", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "collecting_institution_function": { + "header": "N", + "label": "Center Class Function", + "ontology": "NCIT:C188820", + "description": "Institution’s functional classification or primary service purpose", "examples": [ "Hospitales Generales" ], - "ontology": "NCIT:C188820", - "type": "string", - "description": "Institution’s functional classification or primary service purpose.", "classification": "Sample collection and processing", - "label": "Center Class Function", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lab_geo_loc_latitude": { + "header": "N", + "label": "Originating Laboratory Latitude", + "ontology": "EFO:0005020", + "description": "The latitude coordinates of the geographical location of the agency/institution that collected the sample.", "examples": [ "36.8625108" ], - "ontology": "EFO:0005020", - "type": "string", - "description": "The latitude coordinates of the geographical location of the agency/institution that collected the sample.", "classification": "Sample collection and processing", - "label": "Originating Laboratory Latitude", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lab_geo_loc_longitude": { + "header": "N", + "label": "Originating Laboratory Longitude", + "ontology": "EFO:0005021", + "description": "The longitude coordinates of the geographical location of the agency/institution that collected the sample.", "examples": [ "-2.4467449" ], - "ontology": "EFO:0005021", - "type": "string", - "description": "The longitude coordinates of the geographical location of the agency/institution that collected the sample.", "classification": "Sample collection and processing", - "label": "Originating Laboratory Longitude", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "collecting_institution_phone": { - "examples": [ - "950016114" - ], + "header": "N", + "label": "Originating Laboratory Phone", "ontology": "NCIT:C40978", - "type": "string", "description": "Phone of the agency/institution that collected the sample.", + "examples": [ + 950016114 + ], "classification": "Sample collection and processing", - "label": "Originating Laboratory Phone", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_latitude": { + "header": "N", + "label": "Geo Loc Latitude", + "ontology": "OBI:0001620", + "description": "The latitude coordinates of the geographical location of sample collection.", "examples": [ "38.98 N" ], - "ontology": "OBI:0001620", - "type": "string", - "description": "The latitude coordinates of the geographical location of sample collection.", "classification": "Sample collection and processing", - "label": "Geo Loc Latitude", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "geo_loc_longitude": { + "header": "N", + "label": "Geo Loc Longitude", + "ontology": "OBI:0001621", + "description": "The longitude coordinates of the geographical location of sample collection.", "examples": [ "77.11 W" ], - "ontology": "OBI:0001621", - "type": "string", - "description": "The longitude coordinates of the geographical location of sample collection.", "classification": "Sample collection and processing", - "label": "Geo Loc Longitude", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "study_type": { - "$ref": "#/$defs/enums/study_type", + "header": "N", + "label": "Study type", + "ontology": "NCIT:C142175", + "description": "The nature of the investigation or the investigational use for which the study is being done", "examples": [ "Whole Genome Sequencing [NCIT:C101294]" ], - "ontology": "NCIT:C142175", - "type": "string", - "description": "The nature of the investigation or the investigational use for which the study is being done.", + "$ref": "#/$defs/enums/study_type", "classification": "Public databases", - "label": "Study type", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "anatomical_material": { - "$ref": "#/$defs/enums/anatomical_material", + "header": "N", + "label": "Anatomical Material", + "ontology": "GENEPIO:0001211", + "description": "A substance obtained from an anatomical part of an organism e.g. tissue, blood.", "examples": [ "Blood [UBERON:0000178]" ], - "ontology": "GENEPIO:0001211", - "type": "string", - "description": "A substance obtained from an anatomical part of an organism e.g. tissue, blood.", + "$ref": "#/$defs/enums/anatomical_material", "classification": "Sample collection and processing", - "label": "Anatomical Material", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "anatomical_part": { - "$ref": "#/$defs/enums/anatomical_part", + "header": "N", + "label": "Anatomical Part", + "ontology": "GENEPIO:0001214", + "description": "A data field which describes the substance obtained from an anatomical part of an organism. ", "examples": [ "Nasopharynx [UBERON:0001728]" ], - "ontology": "GENEPIO:0001214", - "type": "string", - "description": "A data field which describes the substance obtained from an anatomical part of an organism.", + "$ref": "#/$defs/enums/anatomical_part", "classification": "Sample collection and processing", - "label": "Anatomical Part", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "collection_method": { - "$ref": "#/$defs/enums/collection_method", + "header": "N", + "label": "Collection Method", + "ontology": "LOINC:LP32732-7", + "description": "A data field which describes the process used to collect the sample. ", "examples": [ "Trachel Aspiration" ], - "ontology": "LOINC:LP32732-7", - "type": "string", - "description": "A data field which describes the process used to collect the sample.", + "$ref": "#/$defs/enums/collection_method", "classification": "Sample collection and processing", - "label": "Collection Method", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "body_product": { - "$ref": "#/$defs/enums/body_product", + "header": "N", + "label": "Body Product", + "ontology": "SNOMED:364684009", + "description": "A data field which describes the substance excreted/secreted from an organism. ", "examples": [ "Feces" ], - "ontology": "SNOMED:364684009", - "type": "string", - "description": "A data field which describes the substance excreted/secreted from an organism.", + "$ref": "#/$defs/enums/body_product", "classification": "Sample collection and processing", - "label": "Body Product", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "tax_id": { + "header": "N", + "label": "Tax ID", + "ontology": "NCIT:C164641", + "description": "The NCBITaxon identifier for the organism being sequenced.", "examples": [ "2697049" ], - "ontology": "NCIT:C164641", - "type": "string", - "description": "The NCBITaxon identifier for the organism being sequenced.", "classification": "Sample collection and processing", - "label": "Tax ID", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "host_scientific_name": { - "$ref": "#/$defs/enums/host_scientific_name", + "header": "N", + "label": "Host Scientific Name", + "ontology": "GENEPIO:0001387", + "description": "The taxonomic, or scientific name of the host.", "examples": [ "Homo sapiens [NCBITaxon:9606]" ], - "ontology": "GENEPIO:0001387", - "type": "string", - "description": "The taxonomic, or scientific name of the host.", + "$ref": "#/$defs/enums/host_scientific_name", "classification": "Host information", - "label": "Host Scientific Name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "host_disease": { - "$ref": "#/$defs/enums/host_disease", + "header": "N", + "label": "Host disease", + "ontology": "SNOMED:64572001", + "description": "The name of the disease experienced by the host.", "examples": [ "COVID-19 [MONDO:0100096]" ], - "ontology": "SNOMED:64572001", - "type": "string", - "description": "The name of the disease experienced by the host.", + "$ref": "#/$defs/enums/host_disease", "classification": "Host information", - "label": "Host disease", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "purpose_of_sequencing": { - "$ref": "#/$defs/enums/purpose_of_sequencing", + "header": "N", + "label": "Purpose of Sequencing", + "ontology": "GENEPIO:0001445", + "description": "The reason that the sample was sequenced.", "examples": [ "Baseline surveillance (random sampling) [GENEPIO:0100005]" ], - "ontology": "GENEPIO:0001445", - "type": "string", - "description": "The reason that the sample was sequenced.", + "$ref": "#/$defs/enums/purpose_of_sequencing", "classification": "Sequencing", - "label": "Purpose of Sequencing", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_enrichment_panel_assay_version_other": { + "header": "N", + "label": "If Enrichment panel/assay version Is Other, Specify", + "ontology": 0, + "description": "A form or variant of software; one of a sequence of copies of a software program, each incorporating new modifications.", "examples": [ "2.1.3" ], - "ontology": "0", - "type": "string", - "description": "A form or variant of software; one of a sequence of copies of a software program, each incorporating new modifications.", "classification": "Sequencing", - "label": "If Enrichment panel/assay version Is Other, Specify", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "amplicon_pcr_primer_scheme": { + "header": "N", + "label": "Amplicon Pcr Primer Scheme", + "ontology": "GENEPIO:0001456", + "description": "The specifications of the primers (primer sequences, binding positions, fragment size generated etc) used to generate the amplicons to be sequenced.", "examples": [ "https://github.com/joshquick/artic-ncov2019/blob/master/primer_schemes/nCoV-2019/V3/nCoV-2019.tsv" ], - "ontology": "GENEPIO:0001456", - "type": "string", - "description": "The specifications of the primers (primer sequences, binding positions, fragment size generated etc) used to generate the amplicons to be sequenced.", "classification": "Sequencing", - "label": "Amplicon Pcr Primer Scheme", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "sequencing_instrument_platform": { - "$ref": "#/$defs/enums/sequencing_instrument_platform", + "header": "N", + "label": "Sequencing Instrument Platform", + "ontology": "GENEPIO:0000071", + "description": "A sequencing plaform (brand) is a name of a company that produces sequencer equipment.", "examples": [ "Illumina" ], - "ontology": "GENEPIO:0000071", - "type": "string", - "description": "A sequencing plaform (brand) is a name of a company that produces sequencer equipment.", + "$ref": "#/$defs/enums/sequencing_instrument_platform", "classification": "Sequencing", - "label": "Sequencing Instrument Platform", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "read_length": { + "header": "N", + "label": "Read length", + "ontology": "NCIT:C153362", + "description": "Number of base pairs per read", "examples": [ - 75 + "75" ], - "ontology": "NCIT:C153362", + "classification": "Sequencing", "type": "integer", "minimum": 0, "maximum": 10000, - "description": "Number of base pairs per read.", - "classification": "Sequencing", - "label": "Read length", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "number_of_reads": { - "examples": [ - 75 - ], + "header": "N", + "label": "Read count", "ontology": "NCIT:C153362", - "type": "integer", "description": "The number of nucleotides successfully ordered from each side of a nucleic acid fragment obtained after the completion of a sequencing process.", + "examples": [ + "75" + ], "classification": "Sequencing", - "label": "Read count", - "fill_mode": "batch", - "header": "N" + "type": "integer", + "fill_mode": "batch" }, "sequence_file_R1_md5": { + "header": "N", + "label": "Sequence fastq R1 md5", + "ontology": "NCIT:C171276", + "description": "Checksum md5 value to validate successful file transmission in R1", "examples": [ "b5242d60471e5a5a97b35531dbbe8c30" ], - "ontology": "NCIT:C171276", - "type": "string", - "description": "Checksum md5 value to validate successful file transmission in R1.", "classification": "Bioinformatics and QC metrics fields", - "label": "Sequence fastq R1 md5", - "fill_mode": "sample", - "header": "N" + "type": "string", + "fill_mode": "sample" }, "sequence_file_R2_md5": { + "header": "N", + "label": "Sequence fastq R2 md5", + "ontology": "NCIT:C171276", + "description": "Checksum md5 value to validate successful file transmission in R2", "examples": [ "b5242d60471e5a5a97b35531dbbe8c30" ], - "ontology": "NCIT:C171276", - "type": "string", - "description": "Checksum md5 value to validate successful file transmission in R2.", "classification": "Bioinformatics and QC metrics fields", - "label": "Sequence fastq R2 md5", - "fill_mode": "sample", - "header": "N" + "type": "string", + "fill_mode": "sample" }, "sequence_file_path_R1": { + "header": "N", + "label": "Filepath R1", + "ontology": "GENEPIO:0001478", + "description": "The filepath of the r1 file.", "examples": [ "/User/Documents/RespLab/Data/" ], - "ontology": "GENEPIO:0001478", - "type": "string", - "description": "The filepath of the r1 file.", "classification": "Files info", - "label": "Filepath R1", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "sequence_file_path_R2": { + "header": "N", + "label": "Filepath R2", + "ontology": "GENEPIO:0001479", + "description": "The filepath of the r2 file.", "examples": [ "/User/Documents/RespLab/Data/" ], - "ontology": "GENEPIO:0001479", - "type": "string", - "description": "The filepath of the r2 file.", "classification": "Files info", - "label": "Filepath R2", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "fast5_filename": { + "header": "N", + "label": "Filename fast5", + "ontology": "GENEPIO:0001480", + "description": "The user-specified filename of the FAST5 file.", "examples": [ "batch1a_sequences.fast5" ], - "ontology": "GENEPIO:0001480", - "type": "string", - "description": "The user-specified filename of the FAST5 file.", "classification": "Files info", - "label": "Filename fast5", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "fast5_filepath": { + "header": "N", + "label": "Filepath fast5", + "ontology": "GENEPIO:0001481", + "description": "The filepath of the FAST5 file.", "examples": [ "/User/Documents/RespLab/Data/" ], - "ontology": "GENEPIO:0001481", - "type": "string", - "description": "The filepath of the FAST5 file.", "classification": "Files info", - "label": "Filepath fast5", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "bioinformatics_analysis_date": { - "examples": [ - "2022-07-15 00:00:00" - ], + "header": "N", + "label": "processing_date", "ontology": "OBI:0002471", + "description": "The time of a sample analysis process YYYY-MM-DD", + "examples": "2022-07-15 00:00:00", + "classification": "Bioinformatics and QC metrics fields", "type": "string", "format": "date", - "description": "The time of a sample analysis process YYYY-MM-DD.", - "classification": "Bioinformatics and QC metrics fields", - "label": "processing_date", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "dehosting_method_software_name": { + "header": "N", + "label": "Dehosting Method", + "ontology": "GENEPIO:0001459", + "description": "The method used to remove host reads from the pathogen sequence.", "examples": [ "KRAKEN2_KRAKEN2 " ], - "ontology": "GENEPIO:0001459", - "type": "string", - "description": "The method used to remove host reads from the pathogen sequence.", "classification": "Bioinformatic Analysis fields", - "label": "Dehosting Method", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "dehosting_method_software_version": { + "header": "N", + "label": "Dehosting Method Version", + "ontology": "LOINC:LA20883-7", + "description": "The method version used to remove host reads from the pathogen sequence.", "examples": [ "2.4.1" ], - "ontology": "LOINC:LA20883-7", - "type": "string", - "description": "The method version used to remove host reads from the pathogen sequence.", "classification": "Bioinformatic Analysis fields", - "label": "Dehosting Method Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "reference_genome_accession": { + "header": "N", + "label": "Reference genome accession", + "ontology": "GENEPIO:0001485", + "description": "A persistent, unique identifier of a genome database entry.", "examples": [ "NC_045512.2" ], - "ontology": "GENEPIO:0001485", - "type": "string", - "description": "A persistent, unique identifier of a genome database entry.", "classification": "Bioinformatics and QC metrics fields", - "label": "Reference genome accession", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "bioinformatics_protocol_software_name": { + "header": "N", + "label": "Bioinformatics protocol", + "ontology": "GENEPIO:0001489", + "description": "The name of the bioinformatics protocol used.", "examples": [ "https://www.protocols.io/groups/cphln-sarscov2-sequencing-consortium/members" ], - "ontology": "GENEPIO:0001489", - "type": "string", - "description": "The name of the bioinformatics protocol used.", "classification": "Bioinformatic Analysis fields", - "label": "Bioinformatics protocol", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_bioinformatic_protocol_is_other_specify": { + "header": "N", + "label": "If bioinformatics protocol Is Other, Specify", + "ontology": "0", + "description": "The name of the bioinformatics protocol used.", "examples": [ "https://www.protocols.io/groups/cphln-sarscov2-sequencing-consortium/members" ], - "ontology": "0", - "type": "string", - "description": "The name of the bioinformatics protocol used.", "classification": "Bioinformatic Analysis fields", - "label": "If bioinformatics protocol Is Other, Specify", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "bioinformatics_protocol_software_version": { + "header": "N", + "label": "Bioinformatics protocol version", + "ontology": "LOINC:LA20883-7", + "description": "The version number of the bioinformatics protocol used.", "examples": [ "https://www.protocols.io/groups/cphln-sarscov2-sequencing-consortium/members" ], - "ontology": "LOINC:LA20883-7", - "type": "string", - "description": "The version number of the bioinformatics protocol used.", "classification": "Bioinformatic Analysis fields", - "label": "Bioinformatics protocol version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "commercial_open_source_both": { - "$ref": "#/$defs/enums/commercial_open_source_both", + "header": "N", + "label": "Commercial/Open-source/both", + "ontology": "0", + "description": "If bioinformatics protocol used was open-source or commercial", "examples": [ "Commercial" ], - "ontology": "0", - "type": "string", - "description": "If bioinformatics protocol used was open-source or commercial.", + "$ref": "#/$defs/enums/commercial_open_source_both", "classification": "Bioinformatic Analysis fields", - "label": "Commercial/Open-source/both", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "preprocessing_software_name": { + "header": "N", + "label": "Preprocessing software", + "ontology": "MS_1002386", + "description": "Software used for preprocessing step.", "examples": [ "fastp" ], - "ontology": "MS_1002386", - "type": "string", - "description": "Software used for preprocessing step.", "classification": "Bioinformatic Analysis fields", - "label": "Preprocessing software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "preprocessing_software_version": { + "header": "N", + "label": "Preprocessing software version", + "ontology": "LOINC:LA20883-7", + "description": "Version of the preprocessing software used.", "examples": [ "v5.3.1" ], - "ontology": "LOINC:LA20883-7", - "type": "string", - "description": "Version of the preprocessing software used.", "classification": "Bioinformatic Analysis fields", - "label": "Preprocessing software version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_preprocessing_other": { + "header": "N", + "label": "If preprocessing Is Other, Specify", + "ontology": "MS_1002386", + "description": "Preprocessing software name other", "examples": [ "Seqtk" ], - "ontology": "MS_1002386", - "type": "string", - "description": "Preprocessing software name other.", "classification": "Bioinformatic Analysis fields", - "label": "If preprocessing Is Other, Specify", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "preprocessing_params": { + "header": "N", + "label": "Preprocessing params", + "ontology": "NCIT:C44175", + "description": "The parameters and settings used to perform preprocessing analysis.", "examples": [ "--cut_mean_quality 30" ], - "ontology": "NCIT:C44175", - "type": "string", - "description": "The parameters and settings used to perform preprocessing analysis.", "classification": "Bioinformatic Analysis fields", - "label": "Preprocessing params", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "mapping_software_name": { + "header": "N", + "label": "Mapping software", + "ontology": "NCIT:C175896", + "description": "Software used for mapping step.", "examples": [ "bowtie2" ], - "ontology": "NCIT:C175896", - "type": "string", - "description": "Software used for mapping step.", "classification": "Bioinformatic Analysis fields", - "label": "Mapping software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "mapping_software_version": { + "header": "N", + "label": "Mapping software version", + "ontology": "LOINC:LA20883-7", + "description": "Version of the mapper used.", "examples": [ "v7.0.1" ], - "ontology": "LOINC:LA20883-7", - "type": "string", - "description": "Version of the mapper used.", "classification": "Bioinformatic Analysis fields", - "label": "Mapping software version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_mapping_other": { + "header": "N", + "label": "If mapping Is Other, Specify", + "ontology": "0", + "description": "Mapping software used other", "examples": [ "Mosaik" ], - "ontology": "0", - "type": "string", - "description": "Mapping software used other.", "classification": "Bioinformatic Analysis fields", - "label": "If mapping Is Other, Specify", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "mapping_params": { + "header": "N", + "label": "Mapping params", + "ontology": "NCIT:C44175", + "description": "Parameters used for mapping step.", "examples": [ "--seed 1" ], - "ontology": "NCIT:C44175", - "type": "string", - "description": "Parameters used for mapping step.", "classification": "Bioinformatic Analysis fields", - "label": "Mapping params", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "assembly": { + "header": "N", + "label": "Assembly software", + "ontology": "GENEPIO:0000090", + "description": "Software used for assembly of the pathogen genome.", "examples": [ "Spades" ], - "ontology": "GENEPIO:0000090", - "type": "string", - "description": "Software used for assembly of the pathogen genome.", "classification": "Bioinformatic Analysis fields", - "label": "Assembly software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "assembly_version": { + "header": "N", + "label": "Assembly software version", + "ontology": "NCIT:C164455", + "description": "Version of the software used for assembly of the pathogen genome.", "examples": [ "Spades" ], - "ontology": "NCIT:C164455", - "type": "string", - "description": "Version of the software used for assembly of the pathogen genome.", "classification": "Bioinformatic Analysis fields", - "label": "Assembly software version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_assembly_other": { + "header": "N", + "label": "If assembly Is Other, Specify", + "ontology": "0", + "description": "Assembly software version", "examples": [ "v3.1" ], - "ontology": "0", - "type": "string", - "description": "Assembly software version.", "classification": "Bioinformatic Analysis fields", - "label": "If assembly Is Other, Specify", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "assembly_params": { + "header": "N", + "label": "Assembly params", + "ontology": "NCIT:C44175", + "description": "The parameters and settings used to perform genome assembly.", "examples": [ "-k 127,56,27" ], - "ontology": "NCIT:C44175", - "type": "string", - "description": "The parameters and settings used to perform genome assembly.", "classification": "Bioinformatic Analysis fields", - "label": "Assembly params", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "bioinfo_metadata_file": { + "header": "N", + "label": "Bioinfo JSON", + "ontology": "CAO:000237", + "description": "Bioinfo JSON with metadata information", "examples": [ "bioinfo_lab_metadata_COD-1111-BU_20250506140633_3C412C.json" ], - "ontology": "CAO:000237", - "type": "string", - "description": "Bioinfo JSON with metadata information.", "classification": "Bioinformatic Analysis fields", - "label": "Bioinfo JSON", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "vcf_filename": { + "header": "N", + "label": "VCF filename", + "ontology": "0", + "description": "Name of the vcf file.", "examples": [ "Ivar" ], - "ontology": "0", - "type": "string", - "description": "Name of the vcf file.", "classification": "Bioinformatic Variants", - "label": "VCF filename", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "variant_calling_software_name": { + "header": "N", + "label": "Variant calling software", + "ontology": "EDAM:operation_3227", + "description": "Software used for variant calling.", "examples": [ "Ivar" ], - "ontology": "EDAM:operation_3227", - "type": "string", - "description": "Software used for variant calling.", "classification": "Bioinformatic Variants", - "label": "Variant calling software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "variant_calling_software_version": { + "header": "N", + "label": "Variant calling software version", + "ontology": "LOINC:LA20883-7", + "description": "Variant calling software version", "examples": [ "v4.1" ], - "ontology": "LOINC:LA20883-7", - "type": "string", - "description": "Variant calling software version.", "classification": "Bioinformatic Variants", - "label": "Variant calling software version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_variant_calling_other": { + "header": "N", + "label": "If variant calling Is Other, Specify", + "ontology": "0", + "description": "Specify if you have used another variant calling software", "examples": [ "GATK HaplotypeCaller" ], - "ontology": "0", - "type": "string", - "description": "Specify if you have used another variant calling software.", "classification": "Bioinformatic Variants", - "label": "If variant calling Is Other, Specify", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "variant_calling_params": { + "header": "N", + "label": "Variant calling params", + "ontology": "NCIT:C44175", + "description": "Params used for variant calling", "examples": [ "-t 0.5 -Q 20" ], - "ontology": "NCIT:C44175", - "type": "string", - "description": "Params used for variant calling.", "classification": "Bioinformatic Variants", - "label": "Variant calling params", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "consensus_sequence_name": { + "header": "N", + "label": "Consensus sequence name", + "ontology": "GENEPIO:0001460", + "description": "The name of the consensus sequence.", "examples": [ "2018086 NC_045512.2" ], - "ontology": "GENEPIO:0001460", - "type": "string", - "description": "The name of the consensus sequence.", "classification": "Bioinformatic Analysis fields", - "label": "Consensus sequence name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "consensus_sequence_filename": { + "header": "N", + "label": "Consensus sequence filename", + "ontology": "GENEPIO:0001461", + "description": "The name of the consensus sequence filename", "examples": [ "2018102.consensus.fa" ], - "ontology": "GENEPIO:0001461", - "type": "string", - "description": "The name of the consensus sequence filename.", "classification": "Bioinformatic Analysis fields", - "label": "Consensus sequence filename", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "consensus_sequence_md5": { + "header": "N", + "label": "Consensus sequence name md5", + "ontology": "0", + "description": "The md5 of the consensus sequence.", "examples": [ "5gaskañlkdak3143242ñlkas" ], - "ontology": "0", - "type": "string", - "description": "The md5 of the consensus sequence.", "classification": "Bioinformatic Analysis fields", - "label": "Consensus sequence name md5", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "consensus_sequence_filepath": { + "header": "N", + "label": "Consensus sequence filepath", + "ontology": "GENEPIO:0001462", + "description": "The filepath of the consesnsus sequence file.", "examples": [ "/User/Documents/RespLab/Data/ncov123assembly.fasta" ], - "ontology": "GENEPIO:0001462", - "type": "string", - "description": "The filepath of the consesnsus sequence file.", "classification": "Bioinformatic Analysis fields", - "label": "Consensus sequence filepath", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "long_table_path": { + "header": "N", + "label": "Long table path", + "ontology": "0", + "description": "The path where the long table including all variants and annotations is.", "examples": [ "/User/Documents/RespLab/ncov123_longtable.tsv" ], - "ontology": "0", - "type": "string", - "description": "The path where the long table including all variants and annotations is.", "classification": "Bioinformatic Analysis fields", - "label": "Long table path", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "consensus_sequence_software_name": { + "header": "N", + "label": "Consensus software", + "ontology": "GENEPIO:0001463", + "description": "The name of software used to generate the consensus sequence.", "examples": [ "Ivar" ], - "ontology": "GENEPIO:0001463", - "type": "string", - "description": "The name of software used to generate the consensus sequence.", "classification": "Bioinformatic Analysis fields", - "label": "Consensus software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_consensus_other": { + "header": "N", + "label": "If consensus Is Other, Specify", + "ontology": "0", + "description": "Specify if you have used another consensus software", "examples": [ "v1.3" ], - "ontology": "0", - "type": "string", - "description": "Specify if you have used another consensus software.", "classification": "Bioinformatic Analysis fields", - "label": "If consensus Is Other, Specify", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "consensus_sequence_software_version": { + "header": "N", + "label": "Consensus software version", + "ontology": "GENEPIO:0001469", + "description": "The version of the software used to generate the consensus sequence.", "examples": [ "1.3" ], - "ontology": "GENEPIO:0001469", - "type": "string", - "description": "The version of the software used to generate the consensus sequence.", "classification": "Bioinformatic Analysis fields", - "label": "Consensus software version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "consensus_params": { + "header": "N", + "label": "Consensus params", + "ontology": "NCIT:C44175", + "description": "Parameters used for consensus generation", "examples": [ "AF > 0.75" ], - "ontology": "NCIT:C44175", - "type": "string", - "description": "Parameters used for consensus generation.", "classification": "Bioinformatic Analysis fields", - "label": "Consensus params", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "consensus_genome_length": { + "header": "N", + "label": "Consensus genome length", + "ontology": "GENEPIO:0001483", + "description": "Size of the assembled genome described as the number of base pairs.", "examples": [ "38677" ], - "ontology": "GENEPIO:0001483", - "type": "string", - "description": "Size of the assembled genome described as the number of base pairs.", "classification": "Bioinformatics and QC metrics fields", - "label": "Consensus genome length", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "depth_of_coverage_threshold": { + "header": "N", + "label": "Depth of coverage threshold", + "ontology": "GENEPIO:0001475", + "description": "The threshold used as a cut-off for the depth of coverage.", "examples": [ "10x" ], - "ontology": "GENEPIO:0001475", - "type": "string", - "description": "The threshold used as a cut-off for the depth of coverage.", "classification": "Bioinformatics and QC metrics fields", - "label": "Depth of coverage threshold", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "number_of_reads_sequenced": { + "header": "N", + "label": "Number of reads sequenced ", + "ontology": "NCIT:C164667", + "description": "The number of total reads generated by the sequencing process.", "examples": [ - 387566 + "387566" ], - "ontology": "NCIT:C164667", + "classification": "Bioinformatics and QC metrics fields", "type": "integer", "minimum": 0, "maximum": 50000000, - "description": "The number of total reads generated by the sequencing process.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Number of reads sequenced ", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "pass_reads": { + "header": "N", + "label": "Number of reads passing filters", + "ontology": "GENEPIO:0000087", + "description": "Number of reads that pass quality control threshold", "examples": [ 153812 ], - "ontology": "GENEPIO:0000087", + "classification": "Bioinformatics and QC metrics fields", "type": "integer", "minimum": 0, "maximum": 50000000, - "description": "Number of reads that pass quality control threshold.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Number of reads passing filters", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "per_reads_host": { + "header": "N", + "label": "%Reads host", + "ontology": "NCIT:C185251", + "description": "Percentage of reads mapped to host", "examples": [ 0.19 ], - "ontology": "NCIT:C185251", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100, - "description": "Percentage of reads mapped to host.", - "classification": "Bioinformatics and QC metrics fields", - "label": "%Reads host", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "per_reads_virus": { + "header": "N", + "label": "%Reads virus", + "ontology": "NCIT:C185251", + "description": "Percentage of reads mapped to virus", "examples": [ 99.69 ], - "ontology": "NCIT:C185251", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100, - "description": "Percentage of reads mapped to virus.", - "classification": "Bioinformatics and QC metrics fields", - "label": "%Reads virus", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "per_unmapped": { + "header": "N", + "label": "%Unmapped", + "ontology": "0", + "description": "Percentage of reads unmapped to virus or to host", "examples": [ 0.13 ], - "ontology": "0", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100, - "description": "Percentage of reads unmapped to virus or to host.", - "classification": "Bioinformatics and QC metrics fields", - "label": "%Unmapped", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "depth_of_coverage_value": { + "header": "N", + "label": "Depth of coverage Mean value", + "ontology": "GENEPIO:0001474", + "description": "The average number of reads representing each nucleotide in the reconstructed sequence.", "examples": [ 400 ], - "ontology": "GENEPIO:0001474", + "classification": "Bioinformatics and QC metrics fields", "type": "integer", "minimum": 0, "maximum": 1000000, - "description": "The average number of reads representing each nucleotide in the reconstructed sequence.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Depth of coverage Mean value", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "per_genome_greater_10x": { + "header": "N", + "label": "% Genome > 10x", + "ontology": "0", + "description": "Percentage of genome with coverage greater than 10x", "examples": [ 96 ], - "ontology": "0", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100, - "description": "Percentage of genome with coverage greater than 10x.", - "classification": "Bioinformatics and QC metrics fields", - "label": "% Genome > 10x", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "per_Ns": { + "header": "N", + "label": "%Ns", + "ontology": "0", + "description": "Percentage of Ns", "examples": [ 3 ], - "ontology": "0", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100, - "description": "Percentage of Ns.", - "classification": "Bioinformatics and QC metrics fields", - "label": "%Ns", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "number_of_Ns": { + "header": "N", + "label": "Number of Ns", + "ontology": 0, + "description": "Number of Ns", "examples": [ 2000 ], - "ontology": "0", + "classification": "Bioinformatics and QC metrics fields", "type": "integer", "minimum": 0, "maximum": 100000, - "description": "Number of Ns.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Number of Ns", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "ns_per_100_kbp": { + "header": "N", + "label": "Ns per 100 kbp", + "ontology": "GENEPIO:0001484", + "description": "The number of N symbols present in the consensus fasta sequence, per 100kbp of sequence.", "examples": [ - 300 + "300" ], - "ontology": "GENEPIO:0001484", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100000, - "description": "The number of N symbols present in the consensus fasta sequence, per 100kbp of sequence.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Ns per 100 kbp", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "number_of_variants_in_consensus": { + "header": "N", + "label": "Number of variants (AF > 75%)", + "ontology": "NCIT:C181350", + "description": "The number of variants found in consensus sequence", "examples": [ 130 ], - "ontology": "NCIT:C181350", + "classification": "Bioinformatic Variants", "type": "integer", "minimum": 0, "maximum": 10000, - "description": "The number of variants found in consensus sequence.", - "classification": "Bioinformatic Variants", - "label": "Number of variants (AF > 75%)", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "number_of_variants_with_effect": { + "header": "N", + "label": "Number of variants with effect", + "ontology": "NCIT:C181350", + "description": "The number of missense variants", "examples": [ 93 ], - "ontology": "NCIT:C181350", + "classification": "Bioinformatic Variants", "type": "integer", "minimum": 0, "maximum": 10000, - "description": "The number of missense variants.", - "classification": "Bioinformatic Variants", - "label": "Number of variants with effect", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "number_of_sgene_frameshifts": { + "header": "N", + "label": "Number of frameshifts in Sgene", + "ontology": "GENEPIO:0001457", + "description": "Number of frameshifts in Sgene", "examples": [ 0 ], - "ontology": "GENEPIO:0001457", + "classification": "Bioinformatics and QC metrics fields", "type": "integer", "minimum": 0, "maximum": 1000, - "description": "Number of frameshifts in Sgene.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Number of frameshifts in Sgene", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "number_of_unambiguous_bases": { + "header": "N", + "label": "Number of unambiguous bases", + "ontology": "GENEPIO:0001457", + "description": "Number of unambiguous bases", "examples": [ 29000 ], - "ontology": "GENEPIO:0001457", + "classification": "Bioinformatics and QC metrics fields", "type": "integer", "minimum": 0, "maximum": 30000, - "description": "Number of unambiguous bases.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Number of unambiguous bases", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "per_ldmutations": { + "header": "N", + "label": "Percentage of Lineage Defining Mutations", + "ontology": "GENEPIO:0001457", + "description": "Percentage of Lineage Defining Mutations", "examples": [ 98 ], - "ontology": "GENEPIO:0001457", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100, - "description": "Percentage of Lineage Defining Mutations.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Percentage of Lineage Defining Mutations", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "per_sgene_ambiguous": { + "header": "N", + "label": "Percentage of sSgene ambiguous bases", + "ontology": "GENEPIO:0001457", + "description": "Percentage of sSgene ambiguous bases", "examples": [ 0 ], - "ontology": "GENEPIO:0001457", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100, - "description": "Percentage of sSgene ambiguous bases.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Percentage of sSgene ambiguous bases", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "per_sgene_coverage": { + "header": "N", + "label": "Percentage of Sgene coverage", + "ontology": "GENEPIO:0001457", + "description": "Percentage of Sgene coverage", "examples": [ 99 ], - "ontology": "GENEPIO:0001457", + "classification": "Bioinformatics and QC metrics fields", "type": "number", "minimum": 0, "maximum": 100, - "description": "Percentage of Sgene coverage.", - "classification": "Bioinformatics and QC metrics fields", - "label": "Percentage of Sgene coverage", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "qc_test": { + "header": "N", + "label": "Quality control evaluation", + "ontology": "GENEPIO:0001457", + "description": "Quality control evaluation", "examples": [ "pass" ], - "ontology": "GENEPIO:0001457", - "type": "string", - "description": "Quality control evaluation.", "classification": "Bioinformatics and QC metrics fields", - "label": "Quality control evaluation", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "qc_failed": { + "header": "N", + "label": "Quality control failed fields", + "ontology": 0, + "description": "Quality control failed fields", "examples": [ "(per_sgene_coverage < 98.0)" ], - "ontology": "0", - "type": "string", - "description": "Quality control failed fields.", "classification": "Bioinformatics and QC metrics fields", - "label": "Quality control failed fields", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "schema_name": { + "header": "N", + "label": "Schema Name", + "ontology": 0, + "description": "Name of the JSON Schema", "examples": [ "relecov_schema.json" ], - "ontology": "0", - "type": "string", - "description": "Name of the JSON Schema.", "classification": "Files info", - "label": "Schema Name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "schema_version": { + "header": "N", + "label": "Schema Version", + "ontology": 0, + "description": "Version of the JSON Schema", "examples": [ "v3.0.0" ], - "ontology": "0", - "type": "string", - "description": "Version of the JSON Schema.", "classification": "Files info", - "label": "Schema Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "variant_name": { + "header": "N", + "label": "Variant Name", + "ontology": "GENEPIO:0001498", + "description": "The variant classification of the lineage i.e. alpha, beta, etc.", "examples": [ "alpha" ], - "ontology": "GENEPIO:0001498", - "type": "string", - "description": "The variant classification of the lineage i.e. alpha, beta, etc.", "classification": "Genomic Typing fields", - "label": "Variant Name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "variant_designation": { - "$ref": "#/$defs/enums/variant_designation", + "header": "N", + "label": "Variant designation", + "ontology": "GENEPIO:0001503", + "description": "The variant classification of the lineage i.e. variant, variant of concern.", "examples": [ "Variant of Concern (VOC) [GENEPIO:0100083]" ], - "ontology": "GENEPIO:0001503", - "type": "string", - "description": "The variant classification of the lineage i.e. variant, variant of concern.", + "$ref": "#/$defs/enums/variant_designation", "classification": "Genomic Typing fields", - "label": "Variant designation", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "gisaid_submitter_id": { + "header": "N", + "label": "GISAID submitter id", + "ontology": "NCIT:C54269", + "description": "GISAID sequence ID.", "examples": [ "ID9876" ], - "ontology": "NCIT:C54269", - "type": "string", - "description": "GISAID sequence ID.", "classification": "Public databases", - "label": "GISAID submitter id", - "fill_mode": "sample", - "header": "N" + "type": "string", + "fill_mode": "sample" }, "gisaid_covv_type": { + "header": "N", + "label": "GISAID covv type", + "ontology": "NCIT:C25284", + "description": "default must remain 'betacoronavirus'", "examples": [ "betacoronavirus" ], - "ontology": "NCIT:C25284", - "type": "string", - "description": "default must remain 'betacoronavirus'.", "classification": "Public databases", - "label": "GISAID covv type", - "fill_mode": "sample", - "header": "N" + "type": "string", + "fill_mode": "sample" }, "ena_analysis_accession": { + "header": "N", + "label": "Analysis Accession", + "ontology": "GENEPIO:0001145", + "description": "A data field which describes the GenBank/ENA/DDBJ identifier assigned to the sequence in the International Nucleotide Sequence Database Collaboration (INSDC) archives. GenBank = National Genetic Sequence Data Base; ENA = European Nucleotide Archive; DDBJ = DNA DataBank of Japan Example Guidance: Store the accession returned from a GenBank/ENA/DDBJ submission (viral genome assembly).", "examples": [ "ERP123456" ], - "ontology": "GENEPIO:0001145", + "classification": "Public databases", "type": "string", "identifiers_org_prefix": "ena.embl", - "description": "A data field which describes the GenBank/ENA/DDBJ identifier assigned to the sequence in the International Nucleotide Sequence Database Collaboration (INSDC) archives. GenBank = National Genetic Sequence Data Base; ENA = European Nucleotide Archive; DDBJ = DNA DataBank of Japan Example Guidance: Store the accession returned from a GenBank/ENA/DDBJ submission (viral genome assembly).", - "classification": "Public databases", - "label": "Analysis Accession", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "ena_study_accession": { + "header": "N", + "label": "Study accession", + "ontology": "GENEPIO:0001136", + "description": "An identifier data field which describes the International Nucleotide Sequence Database Collaboration (INSDC) accession number of the BioProject(s) to which the BioSample belongs.", "examples": [ "e.g PRJEB39632" ], - "ontology": "GENEPIO:0001136", + "classification": "Public databases", "type": "string", "identifiers_org_prefix": "ena.embl", - "description": "An identifier data field which describes the International Nucleotide Sequence Database Collaboration (INSDC) accession number of the BioProject(s) to which the BioSample belongs.", - "classification": "Public databases", - "label": "Study accession", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "ena_experiment_accession": { + "header": "N", + "label": "Experiment Accession", + "ontology": 0, + "description": "Experiment Accession", "examples": [ "e.g ERX4331406" ], - "ontology": "0", + "classification": "Public databases", "type": "string", "identifiers_org_prefix": "ena.embl", - "description": "Experiment Accession.", - "classification": "Public databases", - "label": "Experiment Accession", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "ena_run_accession": { + "header": "N", + "label": "Run Accession", + "ontology": 0, + "description": "Run Identifier: A sequence of characters used to uniquely identify a particular run of a test on a particular batch of samples.", "examples": [ "e.g ERX4331406" ], - "ontology": "0", + "classification": "Public databases", "type": "string", "identifiers_org_prefix": "ena.embl", - "description": "Run Identifier: A sequence of characters used to uniquely identify a particular run of a test on a particular batch of samples.", - "classification": "Public databases", - "label": "Run Accession", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "ena_submission_accession": { + "header": "N", + "label": "Submission Accession", + "ontology": 0, + "description": "Submission Accession", "examples": [ "e.g ERA2794974" ], - "ontology": "0", + "classification": "Public databases", "type": "string", "identifiers_org_prefix": "ena.embl", - "description": "Submission Accession.", - "classification": "Public databases", - "label": "Submission Accession", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "ena_experiment_title": { + "header": "N", + "label": "Experiment title", + "ontology": "NCIT:C181729", + "description": "Experiment Name: The name assigned to an experiment.", "examples": [ "e.g Illumina MiSeq paired end sequencing" ], - "ontology": "NCIT:C181729", - "type": "string", - "description": "Experiment Name: The name assigned to an experiment.", "classification": "Public databases", - "label": "Experiment title", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "study_title": { + "header": "N", + "label": "Study title", + "ontology": "OPMI_0000380", + "description": "Title of study", "examples": [ "e.g SARS-CoV-2 genomes from late April in Stockholm" ], - "ontology": "OPMI_0000380", - "type": "string", - "description": "Title of study.", "classification": "Public databases", - "label": "Study title", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "ena_study_alias": { + "header": "N", + "label": "Study alias", + "ontology": "SIO_001066", + "description": "A study is a process that realizes the steps of a study design.", "examples": [ "e.g Sweden" ], - "ontology": "SIO_001066", - "type": "string", - "description": "A study is a process that realizes the steps of a study design.", "classification": "Public databases", - "label": "Study alias", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "broker_name": { + "header": "N", + "label": "Broker Name", + "ontology": 0, + "description": "Broker name", "examples": [ "P17157_1007" ], - "ontology": "0", - "type": "string", - "description": "Broker name.", "classification": "Public databases", - "label": "Broker Name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "ena_first_created_date": { + "header": "N", + "label": "First created date", + "ontology": "NCIT:C164483", + "description": "The date on which the activity or entity is created.", "examples": [ "e.g 2020-08-07" ], - "ontology": "NCIT:C164483", + "classification": "Public databases", "type": "string", "format": "date", - "description": "The date on which the activity or entity is created.", - "classification": "Public databases", - "label": "First created date", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "host_health_state": { + "header": "N", + "label": "Host health state", + "ontology": "GENEPIO:0001388", + "description": "Status of the host", "examples": [ "Asymptomatic" ], - "ontology": "GENEPIO:0001388", - "type": "string", - "description": "Status of the host.", "classification": "Public databases", - "label": "Host health state", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "ena_sample_description": { + "header": "N", + "label": "Sample Description", + "ontology": "sep:00196", + "description": "Free text description of the sample.", "examples": [ "Sample from Belgian Covid-19 patient. Sample was obtained at the Hospital AZ Rivierenland, in Antwerp, Belgium." ], - "ontology": "sep:00196", - "type": "string", - "description": "Free text description of the sample.", "classification": "Public databases", - "label": "Sample Description", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "file_format": { - "$ref": "#/$defs/enums/file_format", + "header": "N", + "label": "File format", + "ontology": "MS:1001459", + "description": "The run data file model.", "examples": [ "BAM,CRAM,FASTQ" ], - "ontology": "MS:1001459", - "type": "string", - "description": "The run data file model.", + "$ref": "#/$defs/enums/file_format", "classification": "Files info", - "label": "File format", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "collector_name": { + "header": "N", + "label": "Sample collector name", + "ontology": "GENEPIO:0001797", + "description": "Name of the person who collected the specimen", "examples": [ "John Smith, unknown" ], - "ontology": "GENEPIO:0001797", - "type": "string", - "description": "Name of the person who collected the specimen.", "classification": "Sample collection and processing", - "label": "Sample collector name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "experiment_alias": { + "header": "N", + "label": "Experiment alias", + "ontology": "NCIT:C42790", + "description": "A coordinated set of actions and observations designed to generate data, with the ultimate goal of discovery or hypothesis testing.", "examples": [ "experiment_alias_7a" ], - "ontology": "NCIT:C42790", - "type": "string", - "description": "A coordinated set of actions and observations designed to generate data, with the ultimate goal of discovery or hypothesis testing.", "classification": "Sample collection and processing", - "label": "Experiment alias", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "run_alias": { + "header": "N", + "label": "Run Alias", + "ontology": "NCIT:C117058", + "description": "A sequence of characters used to uniquely identify a particular run of a test on a particular batch of samples.", "examples": [ "e.g ena-EXPERIMENT-KAROLINSKA INSITUTET-29-07-2020-14:50:07:151-1" ], - "ontology": "NCIT:C117058", - "type": "string", - "description": "A sequence of characters used to uniquely identify a particular run of a test on a particular batch of samples.", "classification": "Sequencing", - "label": "Run Alias", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "clade_assignment": { + "header": "N", + "label": "Clade Assignment", + "ontology": "NCIT:C179767", + "description": "An indication of the taxonomic clade grouping of organisms.", "examples": [ "B.1.1.7" ], - "ontology": "NCIT:C179767", - "type": "string", - "description": "An indication of the taxonomic clade grouping of organisms.", "classification": "Genomic Typing fields", - "label": "Clade Assignment", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "clade_assignment_software_name": { + "header": "N", + "label": "Clade Assignment Software Name", + "ontology": "GENEPIO:0001501", + "description": "The name of the software used to determine the clade.", "examples": [ "Nextclade" ], - "ontology": "GENEPIO:0001501", - "type": "string", - "description": "The name of the software used to determine the clade.", "classification": "Genomic Typing fields", - "label": "Clade Assignment Software Name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_clade_assignment_other": { + "header": "N", + "label": "Other Clade Assignment Software", + "ontology": "0", + "description": "Other software used to determine clade.", "examples": [ "Custom Pipeline" ], - "ontology": "0", - "type": "string", - "description": "Other software used to determine clade.", "classification": "Genomic Typing fields", - "label": "Other Clade Assignment Software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "clade_assignment_software_version": { + "header": "N", + "label": "Clade Assignment Software Version", + "ontology": "GENEPIO:0001502", + "description": "The version of the software used to determine the clade.", "examples": [ "3.1.2" ], - "ontology": "GENEPIO:0001502", - "type": "string", - "description": "The version of the software used to determine the clade.", "classification": "Genomic Typing fields", - "label": "Clade Assignment Software Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "clade_assignment_software_database_version": { + "header": "N", + "label": "Clade Assignment Software Database Version", + "ontology": "MS:1001016", + "description": "Version of the search database to determine the clade.", "examples": [ "1.2.1" ], - "ontology": "MS:1001016", - "type": "string", - "description": "Version of the search database to determine the clade.", "classification": "Genomic Typing fields", - "label": "Clade Assignment Software Database Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "clade_assignment_date": { + "header": "N", + "label": "Clade Assignment Date", + "ontology": "LOINC:40783184", + "description": "Date when the clade analysis was performed via Nextclade", "examples": [ - "20241204" + 20241204 ], - "ontology": "LOINC:40783184", + "classification": "Genomic Typing fields", "type": "string", "format": "date", - "description": "Date when the clade analysis was performed via Nextclade.", - "classification": "Genomic Typing fields", - "label": "Clade Assignment Date", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "lineage_assignment": { + "header": "N", + "label": "Lineage Assignment", + "ontology": "NCIT:C179767", + "description": "An indication of the taxonomic lineage grouping of organisms.", "examples": [ "KP.3.1.1" ], - "ontology": "NCIT:C179767", - "type": "string", - "description": "An indication of the taxonomic lineage grouping of organisms.", "classification": "Genomic Typing fields", - "label": "Lineage Assignment", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lineage_assignment_software_name": { + "header": "N", + "label": "Lineage Assignment Software Name", + "ontology": "GENEPIO:0001501", + "description": "The name of the software used to determine the lineage.", "examples": [ "Pangolin" ], - "ontology": "GENEPIO:0001501", - "type": "string", - "description": "The name of the software used to determine the lineage.", "classification": "Genomic Typing fields", - "label": "Lineage Assignment Software Name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_lineage_assignment_other": { + "header": "N", + "label": "Other Lineage Assignment Software", + "ontology": "0", + "description": "Other software used to determine lineage.", "examples": [ "Custom Pipeline" ], - "ontology": "0", - "type": "string", - "description": "Other software used to determine lineage.", "classification": "Genomic Typing fields", - "label": "Other Lineage Assignment Software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lineage_assignment_software_version": { + "header": "N", + "label": "Lineage Assignment Software Version", + "ontology": "GENEPIO:0001502", + "description": "The version of the software used to determine the lineage.", "examples": [ "2.2.1" ], - "ontology": "GENEPIO:0001502", - "type": "string", - "description": "The version of the software used to determine the lineage.", "classification": "Genomic Typing fields", - "label": "Lineage Assignment Software Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lineage_algorithm_software_version": { + "header": "N", + "label": "Lineage Algorithm Software Version", + "ontology": 0, + "description": "Version of the algorithm used by the lineage assignment software", "examples": [ "PUSHER-v1.28" ], - "ontology": "0", - "type": "string", - "description": "Version of the algorithm used by the lineage assignment software.", "classification": "Genomic Typing fields", - "label": "Lineage Algorithm Software Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lineage_assignment_scorpio_version": { + "header": "N", + "label": "Lineage Assignment Scorpio Version", + "ontology": "NCIT:C111093", + "description": "The version of the scorpio data used to determine the lineage.", "examples": [ "1.1.3" ], - "ontology": "NCIT:C111093", - "type": "string", - "description": "The version of the scorpio data used to determine the lineage.", "classification": "Genomic Typing fields", - "label": "Lineage Assignment Scorpio Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lineage_assignment_constellation_version": { + "header": "N", + "label": "Lineage Assignment Constellation Version", + "ontology": "NCIT:C111093", + "description": "The version of the constellations databases used to determine the lineage.", "examples": [ "3.1.1" ], - "ontology": "NCIT:C111093", - "type": "string", - "description": "The version of the constellations databases used to determine the lineage.", "classification": "Genomic Typing fields", - "label": "Lineage Assignment Constellation Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lineage_assignment_date": { + "header": "N", + "label": "Lineage Assignment Date", + "ontology": "LOINC:40783184", + "description": "Date when the lineage analysis was performed", "examples": [ - "20241204" + 20241204 ], - "ontology": "LOINC:40783184", + "classification": "Genomic Typing fields", "type": "string", "format": "date", - "description": "Date when the lineage analysis was performed.", - "classification": "Genomic Typing fields", - "label": "Lineage Assignment Date", - "fill_mode": "batch", - "header": "N" + "fill_mode": "batch" }, "lineage_assignment_file": { + "header": "N", + "label": "Lineage Assignment File", + "ontology": "0", + "description": "File containing results from lineage analysis", "examples": [ "lineage_analysis_results.csv" ], - "ontology": "0", - "type": "string", - "description": "File containing results from lineage analysis.", "classification": "Genomic Typing fields", - "label": "Lineage Assignment File", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "lineage_assignment_database_version": { + "header": "N", + "label": "Pangolin Database Version", + "ontology": 0, + "description": "Version of the lineage assignment database", "examples": [ "2.26.0" ], - "ontology": "0", - "type": "string", - "description": "Version of the lineage assignment database.", "classification": "Genomic Typing fields", - "label": "Pangolin Database Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "type_assignment": { + "header": "N", + "label": "Type Assignment", + "ontology": "NCIT:C179767", + "description": "An indication of the taxonomic grouping of organisms.", "examples": [ "RSV-A" ], - "ontology": "NCIT:C179767", - "type": "string", - "description": "An indication of the taxonomic grouping of organisms.", "classification": "Genomic Typing fields", - "label": "Type Assignment", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "type_assignment_software_name": { + "header": "N", + "label": "Type Assignment Software Name", + "ontology": "GENEPIO:0001501", + "description": "The name of the software used to determine the type.", "examples": [ "Nextclade" ], - "ontology": "GENEPIO:0001501", - "type": "string", - "description": "The name of the software used to determine the type.", "classification": "Genomic Typing fields", - "label": "Type Assignment Software Name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_type_assignment_software_other": { + "header": "N", + "label": "Other Type Assignment Software", + "ontology": "0", + "description": "Other software iused to determine Type.", "examples": [ "Manual curation" ], - "ontology": "0", - "type": "string", - "description": "Other software iused to determine Type.", "classification": "Genomic Typing fields", - "label": "Other Type Assignment Software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "type_assignment_software_version": { + "header": "N", + "label": "Type Assignment Software Version", + "ontology": "GENEPIO:0001502", + "description": "The version of the software used to determine thetype.", "examples": [ "2.0.1" ], - "ontology": "GENEPIO:0001502", - "type": "string", - "description": "The version of the software used to determine thetype.", "classification": "Genomic Typing fields", - "label": "Type Assignment Software Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "type_assignment_software_database_version": { + "header": "N", + "label": "Type Assignment Software Database Version", + "ontology": "MS:1001016", + "description": "Version of the search database.", "examples": [ "1.5.2" ], - "ontology": "MS:1001016", - "type": "string", - "description": "Version of the search database.", "classification": "Genomic Typing fields", - "label": "Type Assignment Software Database Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "subtype_assignment": { + "header": "N", + "label": "Subtype Assignment", + "ontology": "NCIT:C179767", + "description": "An indication of the taxonomic grouping of organisms.", "examples": [ "H1N1" ], - "ontology": "NCIT:C179767", - "type": "string", - "description": "An indication of the taxonomic grouping of organisms.", "classification": "Genomic Typing fields", - "label": "Subtype Assignment", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "subtype_assignment_software_name": { + "header": "N", + "label": "Subtype Assignment Software Name", + "ontology": "GENEPIO:0001501", + "description": "The name of the software used to determine the subtype.", "examples": [ "Nextclade" ], - "ontology": "GENEPIO:0001501", - "type": "string", - "description": "The name of the software used to determine the subtype.", "classification": "Genomic Typing fields", - "label": "Subtype Assignment Software Name", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "if_subtype_assignment_software_other": { - "examples": [ - "Custom Pipeline" - ], + "header": "N", + "label": "Other Subtype Assignment Software", "ontology": "0", - "type": "string", "description": "Other software used to determine Subtype.", + "examples": [ + "Custom Pipeline" + ], "classification": "Genomic Typing fields", - "label": "Other Subtype Assignment Software", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "subtype_assignment_software_version": { + "header": "N", + "label": "Subtype Assignment Software Version", + "ontology": "GENEPIO:0001502", + "description": "The version of the software used to determine the subtype.", "examples": [ "3.2.2" ], - "ontology": "GENEPIO:0001502", - "type": "string", - "description": "The version of the software used to determine the subtype.", "classification": "Genomic Typing fields", - "label": "Subtype Assignment Software Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" }, "subtype_assignment_software_database_version": { + "header": "N", + "label": "Subtype Assignment Software Database Version", + "ontology": "MS:1001016", + "description": "Version of the search database.", "examples": [ "3.1.3" ], - "ontology": "MS:1001016", - "type": "string", - "description": "Version of the search database.", "classification": "Genomic Typing fields", - "label": "Subtype Assignment Software Database Version", - "fill_mode": "batch", - "header": "N" + "type": "string", + "fill_mode": "batch" } }, "required": [ - "organism", - "collecting_lab_sample_id", - "isolate_sample_id", - "sequencing_sample_id", - "collecting_institution", - "submitting_institution", - "sample_collection_date", - "host_common_name", - "enrichment_panel", "enrichment_panel_version", - "sequencing_instrument_model", - "library_source", - "library_strategy", - "library_layout", "sequence_file_R1", - "collecting_institution_code_1", + "sequencing_sample_id", + "library_layout", + "library_source", + "sequencing_instrument_model", "collecting_institution_code_2", - "geo_loc_country", + "isolate_sample_id", + "organism", + "collecting_institution_code_1", + "host_common_name", + "submitting_institution", + "collecting_lab_sample_id", + "collecting_institution", "geo_loc_state", + "geo_loc_country", + "library_strategy", + "enrichment_panel", + "sequencing_instrument_platform", "geo_loc_state_cod", - "host_scientific_name", - "sequencing_instrument_platform" + "sample_collection_date", + "host_scientific_name" ], "$defs": { "enums": { @@ -2611,936 +2609,896 @@ }, "collecting_institution": { "enum": [ - "Instituto de Salud Carlos III", - "Red De Salud Mental De Araba (Hospital Psiquiátrico De Araba)", - "Hospital San José", - "Hospital Quirónsalud Vitoria", - "Hospital De Cuidados San Onofre, S.L. (Hospital De Cuidados San Onofre)", - "Hospital De Leza", - "Hospital Universitario De Araba (Sede Txagorritxu Y Sede Santiago)", - "Complejo Hospitalario Universitario De Albacete", - "Hospital General Universitario De Albacete", - "Clínica Santa Cristina Albacete", - "Hospital De Hellín", - "Quironsalud Hospital Albacete", - "Hospital Universitario Nuestra Señora Del Perpetuo Socorro", - "Hospital General De Almansa", - "Hospital General De Villarobledo", - "Centro De Atención A La Salud Mental La Milagrosa", - "Hospital General Universitario De Alicante", - "Clínica Vistahermosa Grupo Hla", - "Vithas Hospital Perpetuo Internacional", - "Hospital Virgen De Los Lirios", - "Sanatorio San Jorge S.L.", - "Hospital Clínica Benidorm", - "Hospital San Carlos De Denia Grupo Hla", - "Hospital General Universitario De Elche", - "Hospital General Universitario De Elda-Virgen De La Salud", - "Hospital Sant Vicent Del Raspeig", - "Sanatorio San Francisco De Borja Fontilles", - "Hospital Marina Baixa De La Vila Joiosa", - "Hospital Vega Baja De Orihuela", - "Hospital Internacional Medimar, S.A.", - "Hospital Psiquiátrico Penitenciario De Fontcalent", - "Hospital Universitario San Juan De Alicante", - "Centro Médico Acuario", - "Hospìtal Quironsalud Torrevieja", - "Hospital Imed Levante", - "Hospital Universitario De Torrevieja", - "Hospital De Denia", - "Hospital La Pedrera", - "Centro De Rehabilitación Neurológica Casaverde", + "Adinfa, Sociedad Cooperativa Andaluza", + "Alm Univass S.L.", + "Antic Hospital De Sant Jaume I Santa Magdalena", + "Aptima Centre Clinic - Mutua De Terrassa", + "Area Psiquiatrica San Juan De Dios", + "Avances Medicos S.A.", + "Avantmedic", + "Banc de Sang i Teixits Catalunya", + "Benito Menni Complex Assistencial En Salut Mental", + "Benito Menni, Complex Assistencial En Salut Mental", + "Cap La Salut", + "Cap Mataro Centre", + "Cap Montmelo", + "Cap Montornes", + "Casal De Curacio", + "Casaverde Centro De Rehabilitacion Neurologico De Extremadura S.L.", + "Casta Guadarrama", + "Castell D'Oliana Residencial,S.L", + "Catlab-Centre Analitiques Terrassa, Aie", + "Centre Collserola Mutual", + "Centre D'Hospitalitzacio I Hospital De Dia Trastorns De La Conducta", + "Centre D'Oftalmologia Barraquer", + "Centre De Prevencio I Rehabilitacio Asepeyo", + "Centre De Salut Doctor Vilaseca-Can Mariner", + "Centre Forum", + "Centre Geriatric Del Maresme", + "Centre Hospitalari Policlinica Barcelona", + "Centre Integral De Serveis En Salut Mental Comunitaria", + "Centre La Creueta", + "Centre Medic Molins, Sl", + "Centre Mq Reus", + "Centre Palamos Gent Gran", + "Centre Polivalent Can Fosc", + "Centre Sanitari Del Solsones, Fpc", + "Centre Social I Sanitari Frederica Montseny", + "Centre Sociosanitari Bernat Jaume", + "Centre Sociosanitari Blauclinic Dolors Aleu", + "Centre Sociosanitari Can Torras", + "Centre Sociosanitari Ciutat De Reus", + "Centre Sociosanitari D'Esplugues", + "Centre Sociosanitari De L'Hospitalet - Consorci Sanitari Integral", + "Centre Sociosanitari De Puigcerda", + "Centre Sociosanitari Del Centre Integral De Salut Cotxeres", + "Centre Sociosanitari El Carme", + "Centre Sociosanitari I Residencia Assistida Salou", + "Centre Sociosanitari Isabel Roig", + "Centre Sociosanitari Llevant", + "Centre Sociosanitari Parc Hospitalari Marti I Julia", + "Centre Sociosanitari Ricard Fortuny", + "Centre Sociosanitari Sant Jordi De La Vall D'Hebron", + "Centre Sociosanitari Sarquavitae Sant Jordi", + "Centre Sociosanitari Verge Del Puig", + "Centres Assistencials Dr. Emili Mira I Lopez (Recinte Torribera).", + "Centro Asistencial Albelda De Iregua", + "Centro Asistencial Hnas. Hospitalarias Del Sagrado Corazon De Jesus", + "Centro Asistencial San Juan De Dios", + "Centro De Atencion A La Salud Mental, La Milagrosa", + "Centro De Rehabilitacion Neurologica Casaverde", + "Centro De Rehabilitacion Psicosocial Nuestra Señora Del Pilar", + "Centro De Rehabilitacion Psicosocial San Juan De Dios", + "Centro De Rehabilitacion Psicosocial Santo Cristo De Los Milagros", + "Centro De Tratamiento De Drogodependientes El Alba", + "Centro De Tratamiento Integral Montevil", + "Centro Habilitado Ernest Lluch", + "Centro Hospitalario Benito Menni", + "Centro Hospitalario De Alta Resolucion De Cazorla", + "Centro Hospitalario Padre Menni", + "Centro Medico De Asturias", + "Centro Medico El Carmen", + "Centro Medico Pintado", + "Centro Medico Teknon, Grupo Quironsalud", "Centro Militar de Veterinaria de la Defensa", - "Gerencia de Salud de Area de Soria", - "Hospital Universitario Vinalopo", - "Hospital Imed Elche", - "Hospital Torrecárdenas", - "Hospital De La Cruz Roja", - "Hospital Virgen Del Mar", - "Hospital La Inmaculada", - "Hospital Universitario Torrecárdenas", - "Hospital Mediterráneo", - "Hospital De Poniente", - "Hospital De Alta Resolución El Toyo", - "Hospital Nuestra Señora De Sonsoles", - "Hospital Provincial De Ávila", - "Clínica Santa Teresa", - "Complejo Asistencial De Avila", - "Hospital De Salud Mental Casta Salud Arévalo", - "Complejo Hospitalario Universitario De Badajoz", - "Hospital Universitario De Badajoz", - "Hospital Materno Infantil", - "Hospital Fundación San Juan De Dios De Extremadura", - "Hospital Don Benito-Villanueva De La Serena", - "Hospital General De Llerena", - "Hospital De Mérida", - "Centro Sociosanitario De Mérida", - "Hospital Quirónsalud Santa Justa", - "Hospital Quironsalud Clideba", - "Hospital Parque Via De La Plata", - "Hospital De Zafra", - "Complejo Hospitalario Llerena-Zafra", - "Hospital Perpetuo Socorro", - "Hospital Siberia-Serena", - "Hospital Tierra De Barros", - "Complejo H. Don Benito-Vva De La Serena", - "Complejo Hospitalario Del Área De Salud De Mérida", - "Casaverde. Centro De Rehabilitación Neurológico De Extremadura", - "Clínica Extremeña De Salud", - "Hospital Parque Vegas Altas", - "Hospital General De Mallorca", - "Hospital Psiquiàtric", - "Clínica Mutua Balear", - "Hospital De La Cruz Roja Española", - "Hospital Sant Joan De Deu", - "Clínica Rotger", + "Centro Neuropsiquiatrico Nuestra Señora Del Carmen", + "Centro Oncoloxico De Galicia", + "Centro Residencial Domusvi La Salut Josep Servat.", + "Centro Salud Mental Perez Espinosa", + "Centro San Francisco Javier", + "Centro San Juan De Dios Ciempozuelos", + "Centro Sanitario Bajo Cinca-Baix Cinca", + "Centro Sanitario Cinco Villas", + "Centro Sanitario Residencial Las Palmas (Cesar Las Palmas)", + "Centro Sociosanitario De Convalecencia Nuestra Señora Virgen Del Carmen", + "Centro Sociosanitario De Convalencencia Los Jazmines", + "Centro Sociosanitario De Merida", + "Centro Sociosanitario De Plasencia", + "Centro Terapeutico Vista Alegre", + "Centro de Investigación Biomédica de Aragón", + "Clinica Activa Mutua 2008", + "Clinica Arcangel San Miguel - Pamplona", + "Clinica Asturias", + "Clinica Bandama", + "Clinica Bofill", + "Clinica Cajal", + "Clinica Cemtro", + "Clinica Corachan", + "Clinica Coroleu - Ssr Hestia.", + "Clinica Creu Blanca", + "Clinica Cristo Rey", + "Clinica De Salud Mental Miguel De Mañara", + "Clinica Diagonal", + "Clinica Doctor Sanz Vazquez", + "Clinica Dr. Leon", + "Clinica El Seranil", + "Clinica Ercilla Mutualia", + "Clinica Galatea", + "Clinica Girona", + "Clinica Guimon, S.A.", + "Clinica Imq Zorrotzaurre", + "Clinica Imske", + "Clinica Indautxu, S.A.", + "Clinica Isadora S.A.", + "Clinica Jorgani", "Clinica Juaneda", - "Policlínica Miramar", - "Hospital Joan March", - "Hospital Can Misses", - "Hospital Residencia Asistida Cas Serres", - "Policlínica Nuestra Señora Del Rosario, S.A.", - "Clínica Juaneda Menorca", - "Hospital General De Muro", "Clinica Juaneda Mahon", - "Hospital Manacor", - "Hospital Son Llatzer", - "Hospital Quirónsalud Palmaplanas", - "Hospital De Formentera", - "Hospital Comarcal D'Inca", - "Hospital Mateu Orfila", - "Hospital Universitari Son Espases", - "Servicio de Microbiologia HU Son Espases", - "Hospital De Llevant", - "Hospital Clinic Balear", - "Clínica Luz De Palma", - "Hospital Clínic De Barcelona, Seu Sabino De Arana", - "Hospital Del Mar", - "Hospital De L'Esperança", - "Hospital Clínic De Barcelona", - "Hospital Fremap Barcelona", - "Centre De Prevenció I Rehabilitació Asepeyo", - "Clínica Mc Copèrnic", - "Clínica Mc Londres", - "Hospital Egarsat Sant Honorat", - "Hospital Dos De Maig", - "Hospital El Pilar", - "Hospital Sant Rafael", - "Clínica Nostra Senyora Del Remei", - "Clínica Sagrada Família", - "Hospital Mare De Déu De La Mercè", - "Clínica Solarium", - "Hospital De La Santa Creu I Sant Pau", - "Nou Hospital Evangèlic", - "Hospital De Nens De Barcelona", - "Institut Guttmann", - "Fundació Puigvert - Iuna", + "Clinica Juaneda Menorca", + "Clinica La Luz, S.L.", + "Clinica Lluria", + "Clinica Lopez Ibor", + "Clinica Los Alamos", + "Clinica Los Manzanos", + "Clinica Los Naranjos", + "Clinica Luz De Palma", + "Clinica Mc Copernic", + "Clinica Mc Londres", + "Clinica Mi Nova Aliança", + "Clinica Montpellier, Grupo Hla, S.A.U", + "Clinica Nostra Senyora De Guadalupe", + "Clinica Nostra Senyora Del Remei", + "Clinica Nuestra Se?Ora De Aranzazu", + "Clinica Nuestra Señora De La Paz", + "Clinica Perpetuo Socorro De Lerida, Grupo Hla, Slu", + "Clinica Planas", + "Clinica Ponferrada Recoletas", + "Clinica Psicogeriatrica Josefina Arregui", + "Clinica Psiquiatrica Bellavista", + "Clinica Psiquiatrica Padre Menni", + "Clinica Psiquiatrica Somio", + "Clinica Quirurgica Onyar", + "Clinica Residencia El Pinar", + "Clinica Rotger", + "Clinica Sagrada Familia", + "Clinica Salus Infirmorum", + "Clinica San Felipe", + "Clinica San Miguel", + "Clinica San Rafael", + "Clinica Sant Antoni", + "Clinica Sant Josep", + "Clinica Santa Creu", + "Clinica Santa Isabel", + "Clinica Santa Maria De La Asuncion (Inviza S. A.)", + "Clinica Santa Teresa", + "Clinica Soquimex", + "Clinica Tara", + "Clinica Terres De L'Ebre", + "Clinica Tres Torres", + "Clinica Universidad De Navarra", + "Clinica Virgen Blanca", + "Clinica Vistahermosa Grupo Hla", + "Clinicas Del Sur Slu", + "Complejo Asistencial Benito Menni", + "Complejo Asistencial De Soria", + "Complejo Asistencial De Zamora", + "Complejo Asistencial De Ávila", + "Complejo Asistencial Universitario De Burgos", + "Complejo Asistencial Universitario De León", + "Complejo Asistencial Universitario De Palencia", + "Complejo Asistencial Universitario De Salamanca", + "Complejo Hospital Costa Del Sol", + "Complejo Hospital Infanta Margarita", + "Complejo Hospital La Merced", + "Complejo Hospital San Juan De La Cruz", + "Complejo Hospital Universitario Clínico San Cecilio", + "Complejo Hospital Universitario De Jaén", + "Complejo Hospital Universitario De Puerto Real", + "Complejo Hospital Universitario Juan Ramón Jiménez", + "Complejo Hospital Universitario Puerta Del Mar", + "Complejo Hospital Universitario Regional De Málaga", + "Complejo Hospital Universitario Reina Sofía", + "Complejo Hospital Universitario Torrecárdenas", + "Complejo Hospital Universitario Virgen De La Victoria", + "Complejo Hospital Universitario Virgen De Las Nieves", + "Complejo Hospital Universitario Virgen De Valme", + "Complejo Hospital Universitario Virgen Del Rocío", + "Complejo Hospital Universitario Virgen Macarena", + "Complejo Hospital Valle De Los Pedroches", + "Complejo Hospitalario De Albacete", + "Complejo Hospitalario De Cartagena Chc", + "Complejo Hospitalario De Cáceres", + "Complejo Hospitalario De Don Benito-Villanueva De La Serena", + "Complejo Hospitalario De Toledo", + "Complejo Hospitalario Del Área De Salud De Mérida", + "Complejo Hospitalario Gregorio Marañón", + "Complejo Hospitalario Infanta Leonor", + "Complejo Hospitalario La Paz", + "Complejo Hospitalario Llerena-Zafra", + "Complejo Hospitalario San Pedro Hospital De La Rioja", + "Complejo Hospitalario Universitario De Badajoz", + "Complejo Hospitalario Universitario De Canarias", + "Complejo Hospitalario Universitario De Gran Canaria Dr. Negrín", + "Complejo Hospitalario Universitario Insular Materno Infantil", + "Complejo Hospitalario Universitario Nuestra Señora De Candelaria", + "Complejo Instituto Psiquiátrico Servicios De Salud Mental José Germain", + "Complexo Hospitalario Universitario A Coruña", + "Complexo Hospitalario Universitario De Ferrol", + "Complexo Hospitalario Universitario De Lugo", + "Complexo Hospitalario Universitario De Ourense", + "Complexo Hospitalario Universitario De Pontevedra", + "Complexo Hospitalario Universitario De Santiago", + "Complexo Hospitalario Universitario De Vigo", + "Comunitat Terapeutica Arenys De Munt", + "Concheiro Centro Medico Quirurgico", + "Consejería de Sanidad", + "Consorcio Hospital General Universitario De Valencia", + "Consorcio Hospitalario Provincial De Castellon", + "Consorcio LUCIA (SACYL,ITACYL UBU,UVa)", + "Cqm Clinic Maresme, Sl", + "Cti De La Corredoria", + "Eatica", + "Espitau Val D'Aran", + "Fraternidad Muprespa, Mutua Colaboradora Con La Seguridad Social Nº 275", + "Fremap Hospital Majadahonda", + "Fremap, Hospital De Barcelona", + "Fremap, Hospital De Vigo", + "Fremap_Hospital Y Centro De Rehabilitacion De Sevilla", + "Fundacio Hospital De L'Esperit Sant", + "Fundacio Hospital Sant Joan De Deu (Martorell)", + "Fundacio Puigvert - Iuna", + "Fundacio Sanitaria Sant Josep", + "Fundacio Sant Hospital.", + "Fundacion Cudeca. Centro De Cuidados Paliativos", + "Fundacion Hospital De Aviles", + "Fundacion Instituto San Jose", + "Fundacion Instituto Valenciano De Oncologia", + "Fundacion Sanatorio Adaro", + "Fundació Althaia-Manresa", + "Fundació Fisabio", + "Gerencia de Atención Primaria Pontevedra Sur", + "Gerencia de Salud de Area de Soria", + "Germanes Hospitalaries. Hospital Sagrat Cor", + "Grupo Quironsalud Pontevedra", + "Hc Marbella International Hospital", + "Helicopteros Sanitarios Hospital", + "Hestia Balaguer.", + "Hestia Duran I Reynals", + "Hestia Gracia", + "Hestia La Robleda", "Hestia Palau.", - "Hospital Universitari Sagrat Cor", - "Clínica Corachan", - "Clínica Tres Torres", - "Hospital Quirónsalud Barcelona", - "Centre Mèdic Delfos", - "Centre Mèdic Sant Jordi De Sant Andreu", - "Hospital Plató", - "Hospital Universitari Quirón Dexeus", - "Centro Médico Teknon, Grupo Quironsalud", - "Hospital De Barcelona", - "Centre Hospitalari Policlínica Barcelona", - "Centre D'Oftalmologia Barraquer", - "Hestia Duran I Reynals", - "Serveis Clínics, S.A.", - "Clínica Coroleu - Ssr Hestia.", - "Clínica Planas", - "Hospital Universitari Germans Trias I Pujol De Badalona", - "Hospital Municipal De Badalona", - "Centre Sociosanitari El Carme", - "Hospital Comarcal De Sant Bernabé", - "Hospital Comarcal Sant Jaume De Calella", - "Hospital De Sant Joan De Déu.", - "Clínica Nostra Senyora De Guadalupe", - "Hospital General De Granollers.", - "Hospital Universitari De Bellvitge", - "Hospital General De L'Hospitalet", - "Lab Clínic ICS Camp de Tarragona-Terres de l'Ebre. Hospital Joan XXIII", - "LABORATORI DE REFERENCIA DE CATALUNYA", - "Banc de Sang i Teixits Catalunya", - "Laboratorio Echevarne, SA Sant Cugat del Vallès", - "Fundació Sanitària Sant Josep", - "Hospital De Sant Jaume", - "Clínica Sant Josep", - "Centre Hospitalari.", - "Fundació Althaia-Manresa", - "Hospital De Sant Joan De Déu (Manresa)", - "Hospital De Sant Andreu", - "Germanes Hospitalàries. Hospital Sagrat Cor", - "Fundació Hospital Sant Joan De Déu", - "Centre Mèdic Molins, Sl", - "Hospital De Mollet", - "Hospital De Sabadell", - "Benito Menni,Complex Assistencial En Salut Mental.", - "Parc Sanitari Sant Joan De Déu - Recinte Sant Boi.", - "Parc Sanitari Sant Joan De Déu - Hospital General", - "Hospital De Sant Celoni.", - "Hospital Universitari General De Catalunya", - "Casal De Curació", - "Hospital Residència Sant Camil - Consorci Sanitari Del Garraf.", - "Centres Assistencials Dr. Emili Mira I López (Recinte Torribera).", - "Fundació Hospital De L'Esperit Sant", - "Hospital De Terrassa.", - "Hospital De Sant Llàtzer", - "Hospital Universitari Mútua De Terrassa", - "Hospital Universitari De Vic", - "Hospital De La Santa Creu", - "Hospital De Viladecans", - "Hospital Sant Antoni Abat - Consorci Sanitari Del Garraf.", - "Centre Sociosanitari Can Torras", - "Hestia Maresme", - "Prytanis Sant Boi Centre Sociosanitari", - "Centre Sociosanitari Verge Del Puig", - "Residència L'Estada", - "Residència Puig-Reig", - "Residència Santa Susanna", - "Hospital De Mataró", - "Hospital Universitari Vall D'Hebron", - "Centre Polivalent Can Fosc", - "Hospital Sociosanitari Mutuam Güell", - "Mútua De Granollers, Mútua De Previsió Social A Prima Fixa", - "Hospital Comarcal De L'Alt Penedès.", - "Àptima Centre Clínic - Mútua De Terrassa", - "Institut Català D'Oncologia - Hospital Duran I Reynals", - "Sar Mont Martí", - "Regina Sar", - "Centre Vallparadís", - "Ita Maresme", - "Clínica Llúria", - "Antic Hospital De Sant Jaume I Santa Magdalena", - "Parc Sanitari Sant Joan De Déu - Numància", - "Prytanis Hospitalet Centre Sociosanitari", - "Comunitat Terapèutica Arenys De Munt", - "Hospital Sociosanitari Pere Virgili", - "Benito Menni Complex Assistencial En Salut Mental", - "Hospital Sanitas Cima", - "Parc Sanitari Sant Joan De Deu - Brians 1.", - "Institut Català D'Oncologia - Hospital Germans Trias I Pujol", - "CAP La Salut EAP Badalona", - "CAP Mataró-6 (Gatassa)", - "CAP Can Mariner Santa Coloma-1", - "CAP Montmeló (Montornès)", - "Centre Collserola Mutual", - "Centre Sociosanitari Sarquavitae Sant Jordi", - "Hospital General Penitenciari", - "Centre Sociosanitari De L'Hospitalet - Consorci Sanitari Integral", - "Sar La Salut Josep Servat", - "Clínica Creu Blanca", - "Hestia Gràcia", - "Centre Sociosanitari D'Esplugues", - "Centre Sociosanitari Ricard Fortuny", - "Centre Residencial Amma Diagonal", - "Centre Fòrum", - "Centre Sociosanitari Blauclínic Dolors Aleu", - "Parc Sanitari Sant Joan De Déu - Til·Lers", - "Clínica Galatea", - "Hospital D'Igualada", - "Centre Social I Sanitari Frederica Montseny", - "Parc Sanitari Sant Joan De Deu-Serveis Sanitaris Centre Penitenciari Brians-2", - "Centre Integral De Serveis En Salut Mental Comunitària", - "Centre Sociosanitari Sant Jordi De La Vall D'Hebron", - "Lepant Residencial Qgg, Sl", - "Mapfre Quavitae Barcelona", - "Unitat Polivalent Salut Mental Barcelona-Nord", - "Cqm Clínic Maresme, Sl", - "Serveis Sanitaris La Roca Del Valles 2", - "Clínica Del Vallès", - "Centre Gerontològic Amma Sant Cugat", - "Serveis Sanitaris Sant Joan De Vilatorrada", - "Centre Sociosanitari Stauros", - "Hospital De Sant Joan Despí Moisès Broggi", - "Amma Horta", - "Unitat Polivalent Benito Menni En Salut Mental De L'Hospitalet-El Prat De Llobregat", - "Centre Sociosanitari Del Centre Integral De Salut Cotxeres", - "Clínica Sant Antoni", - "Clínica Diagonal", - "Hospital Sociosanitari De Mollet", - "Centre Sociosanitari Isabel Roig", - "Iván Mañero Clínic", - "Institut Trastorn Límit", - "Centre D'Hospitalització I Hospital De Dia Trastorns De La Conducta", - "Sarquavitae Bonanova", - "Centre La Creueta", - "Unitat Terapèutica-Educativa Acompanya'M", - "Hospital Fuente Bermeja", - "Hospital Recoletas De Burgos", - "Hospital San Juan De Dios De Burgos", - "Hospital Santos Reyes", - "Hospital Residencia Asistida De La Luz", - "Hospital Santiago Apóstol", - "Complejo Asistencial Universitario De Burgos", - "Hospital Universitario De Burgos", - "Hospital San Pedro De Alcántara", - "Hospital Provincial Nuestra Señora De La Montaña", - "Hospital Ciudad De Coria", - "Hospital Campo Arañuelo", - "Hospital Virgen Del Puerto", - "Hospital Sociosanitario De Plasencia", - "Complejo Hospitalario De Cáceres", - "Hospital Quirón Salud De Cáceres", - "Clínica Soquimex", - "Clinica Quirúrgica Cacereña, S.A-(Clínica San Francisco)", - "Hospital Universitario Puerta Del Mar", - "Clínica La Salud", - "Hospital San Rafael", - "Hospital Punta De Europa", - "Clínica Los Álamos", - "Hospital Universitario De Jerez De La Frontera", - "Hospital San Juan Grande", - "Hospital De La Línea De La Concepción", - "Hospital General Santa María Del Puerto", - "Hospital Universitario De Puerto Real", - "Hospital Virgen De Las Montañas", - "Hospital Virgen Del Camino", - "Hospital Jerez Puerta Del Sur", - "Hospital Viamed Bahía De Cádiz", - "Hospital Punta De Europa", - "Hospital Viamed Novo Sancti Petri", - "Clínica Serman - Instituto Médico", - "Hospital Quirón Campo De Gibraltar", - "Hospital Punta Europa. Unidad De Cuidados Medios", - "Hospital San Carlos", - "Hospital De La Línea De La Concepción", - "Hospital General Universitario De Castellón", - "Hospital La Magdalena", - "Consorcio Hospitalario Provincial De Castellón", - "Hospital Comarcal De Vinaròs", - "Hospital Universitario De La Plana", - "Instituto De Traumatologia De Unión De Mutuas (Matepss Nº 267)", - "Hospital Rey D. Jaime", - "Servicios Sanitarios Del Centro Penitenciario De Castellón Ii (Albocàsser)", - "Servicios Sanitarios Y Asistenciales", - "Hospital Quirónsalud Ciudad Real", - "Hospital General La Mancha Centro", - "Hospital Virgen De Altagracia", - "Hospital Santa Bárbara", - "Hospital General De Valdepeñas", - "Hospital General De Ciudad Real", - "Hospital General De Tomelloso", - "Hospital Universitario Reina Sofía", - "Hospital Los Morales", - "Hospital Materno-Infantil Del H.U. Reina Sofía", - "Hospital Provincial", - "Hospital De La Cruz Roja De Córdoba", - "Hospital San Juan De Dios De Córdoba", - "Hospital Infanta Margarita", - "Hospital Valle De Los Pedroches", - "Hospital De Montilla", - "Hospital La Arruzafa-Instituto De Oftalmología", - "Hospital De Alta Resolución De Puente Genil", - "Hospital De Alta Resolución Valle Del Guadiato", - "Hospital General Del H.U. Reina Sofía", - "Hospital Quironsalud Córdoba", - "Complexo Hospitalario Universitario A Coruña", - "Hospital Universitario A Coruña", - "Hospital Teresa Herrera (Materno-Infantil)", - "Hospital Maritimo De Oza", - "Centro Oncoloxico De Galicia", - "Hospital Quironsalud A Coruña", - "Hospital Hm Modelo", - "Maternidad Hm Belen", - "Hospital Abente Y Lago", - "Complexo Hospitalario Universitario De Ferrol", - "Hospital Universitario Arquitecto Marcide", - "Hospital Juan Cardona", - "Hospital Naval", - "Complexo Hospitalario Universitario De Santiago", - "Hospital Clinico Universitario De Santiago", - "Hospital Gil Casares", - "Hospital Medico Cirurxico De Conxo", - "Hospital Psiquiatrico De Conxo", - "Hospital Hm Esperanza", - "Hospital Hm Rosaleda", - "Sanatorio La Robleda", - "Hospital Da Barbanza", - "Hospital Virxe Da Xunqueira", - "Hm Modelo (Grupo)", - "Hospital Hm Rosaleda - Hm La Esperanza", - "Hospital Virgen De La Luz", - "Hospital Recoletas Cuenca S.L.U.", - "Hospital Universitari De Girona Dr. Josep Trueta", - "Clínica Bofill", - "Clínica Girona", - "Clínica Quirúrgica Onyar", - "Clínica Salus Infirmorum", - "Hospital De Sant Jaume", - "Hospital De Campdevànol", - "Hospital De Figueres", - "Clínica Santa Creu", - "Hospital Sociosanitari De Lloret De Mar", - "Hospital D'Olot I Comarcal De La Garrotxa", - "Hospital De Palamós", - "Residència De Gent Gran Puig D'En Roca", - "Hospital Comarcal De Blanes", - "Residència Geriàtrica Maria Gay", - "Hospital Sociosanitari Mutuam Girona", - "Centre Sociosanitari De Puigcerdà", - "Centre Sociosanitari Bernat Jaume", - "Institut Català D'Oncologia Girona - Hospital Josep Trueta", - "Hospital Santa Caterina-Ias", - "Centre Palamós Gent Gran", - "Centre Sociosanitari Parc Hospitalari Martí I Julià", - "Hospital De Cerdanya / Hôpital De Cerdagne", - "Hospital General Del H.U. Virgen De Las Nieves", - "Hospital De Neurotraumatología Y Rehabilitación", - "Hospital De La Inmaculada Concepción", - "Hospital De Baza", - "Hospital Santa Ana", - "Hospital Universitario Virgen De Las Nieves", - "Hospital De Alta Resolución De Guadix", - "Hospital De Alta Resolución De Loja", - "Hospital Vithas La Salud", - "Hospital Universitario San Cecilio", - "Microbiología HUC San Cecilio", - "Hospital Materno-Infantil Virgen De Las Nieves", - "Hospital Universitario De Guadalajara", - "Clínica La Antigua", - "Clínica Dr. Sanz Vázquez", - "U.R.R. De Enfermos Psíquicos Alcohete", - "Instituto De Enfermedades Neurológicas De Castilla-La Mancha", - "Mutualia-Clinica Pakea", - "Hospital Ricardo Bermingham (Fundación Matia)", - "Policlínica Gipuzkoa S.A.", - "Hospital Quirón Salud Donostia", - "Fundación Onkologikoa Fundazioa", - "Organización Sanitaria Integrada Bidasoa (Osi Bidasoa)", - "Organización Sanitaria Integrada Alto Deba", - "Hospital Aita Menni", - "Hospital Psiquiátrico San Juan De Dios", - "Clinica Santa María De La Asunción, (Inviza, S.A.)", - "Sanatorio De Usurbil, S.L.", - "Hospital De Zumarraga", - "Hospital De Mendaro", - "Hospital Universitario Donostia-Donostia Unibertsitate Ospitalea", - "Hospital San Juan De Dios Donostia", - "Hospital Infanta Elena", - "Hospital Vázquez Díaz", - "Hospital Blanca Paloma", - "Clínica Los Naranjos", - "Hospital De Riotinto", - "Hospital Universitario Juan Ramón Jiménez", - "Hospital Juan Ramón Jiménez", - "Hospital Costa De La Luz", - "Hospital Virgen De La Bella", - "Hospital General San Jorge", - "Centro De Rehab. Psicosocial Santo Cristo De Los Milagros", - "Hospital Sagrado Corazón De Jesús", - "Hospital Viamed Santiago", - "Hospital De Barbastro", - "Hospital De Jaca.Salud", - "Centro Sanitario Bajo Cinca-Baix Cinca", - "Hospital General Del H.U. De Jaén", - "Hospital Doctor Sagaz", - "Hospital Neurotraumatológico Del H.U. De Jaén", - "Clínica Cristo Rey", - "Hospital San Agustín", - "Hospital San Juan De La Cruz", - "Hospital Universitario De Jaén", - "Hospital Alto Guadalquivir", - "Hospital Materno-Infantil Del H.U. De Jaén", - "Hospital De Alta Resolución Sierra De Segura", - "Hospital De Alta Resolución De Alcaudete", - "Hospital De Alta Resolución De Alcalá La Real", - "Hospital De León", - "Hospital Monte San Isidro", - "Regla Hm Hospitales", - "Hospital Hm San Francisco", - "Hospital Santa Isabel", - "Hospital El Bierzo", - "Hospital De La Reina", - "Hospital San Juan De Dios", - "Complejo Asistencial Universitario De León", - "Clínica Altollano", - "Clínica Ponferrada", - "Hospital Valle De Laciana", - "Hospital Universitari Arnau De Vilanova De Lleida", - "Hospital Santa Maria", - "Vithas Hospital Montserrat", - "Clínica Perpetuo Socorro De Lérida, Grupo Hla, Slu", - "Clínica Terres De Ponent", - "Clínica Psiquiàtrica Bellavista", - "Fundació Sant Hospital.", - "Centre Sanitari Del Solsonès, Fpc", - "Hospital Comarcal Del Pallars", - "Espitau Val D'Aran", - "Hestia Balaguer.", - "Residència Terraferma", - "Castell D'Oliana Residencial,S.L", - "Hospital Jaume Nadal Meroles", - "Sant Joan De Déu Terres De Lleida", - "Reeixir", - "Hospital Sant Joan De Déu Lleida", - "Complejo Hospitalario San Millan San Pedro De La Rioja", - "Hospital San Pedro", - "Hospital General De La Rioja", - "Policlínico Riojano Nuestra Señora De Valvanera, S.A.", - "Fundación Hospital Calahorra", - "Clínica Los Manzanos", - "Centro Asistencial De Albelda De Iregua", - "Centro Sociosanitario De Convalecencia Los Jazmines", - "Centro Sociosanitario De Convalecencia Nuestra Señora Virgen Del Carmen", - "Complexo Hospitalario Universitario De Lugo", - "Hospital De Calde (Psiquiatrico)", - "Hospital Polusa", - "Sanatorio Nosa Señora Dos Ollos Grandes", - "Hospital Publico Da Mariña", - "Hospital De Monforte", - "Hospital Universitario Lucus Augusti", - "Hospital Universitario La Paz", - "Hospital Ramón Y Cajal", - "Hospital Universitario 12 De Octubre", - "Hospital Clínico San Carlos", - "Hospital Virgen De La Torre", - "Hospital Universitario Santa Cristina", - "Hospital Universitario De La Princesa", - "Hospital Infantil Universitario Niño Jesus", - "Hospital Central De La Cruz Roja San José Y Santa Adela", - "Hospital Carlos Iii", - "Hospital Cantoblanco", - "Complejo Hospitalario Gregorio Marañón", - "Hospital General Universitario Gregorio Marañón", - "Instituto Provincial De Rehabilitación", - "Hospital Dr. R. Lafora", - "Sanatorio Nuestra Señora Del Rosario", - "Hospital De La V.O.T. De San Francisco De Asís", - "Hospital Quirónsalud San José", - "Hospital Beata María Ana. Hh. Hospitalarias Sgdo. C. De Jesús", - "Clínica Santa Elena", - "Hospital San Francisco De Asís", - "Clínica San Miguel", - "Clínica Nuestra Sra. De La Paz", - "Fundación Instituto San José", - "Hospital Universitario Fundación Jiménez Díaz", - "Hestia Madrid (Clínica Sear, S.A.)", - "Hospital Ruber Juan Bravo 39", - "Hospital Vithas Nuestra Señora De América", - "Hospital Virgen De La Paloma, S.A.", - "Clínica La Luz, S.L.", - "Fuensanta S.L. (Clínica Fuensanta)", - "Hospital Ruber Juan Bravo 49", - "Hospital Ruber Internacional", - "Clínica La Milagrosa", - "Hospital Universitario La Zarzuela", - "Hospital Universitario Hm Nuevo Belen", - "Sanatorio Neuropsiquiátrico Doctor León", - "Instituto De Investigaciones Neuropsiquiátricas Dr. López Ibor", - "Sanatorio Esquerdo, S.A.", - "Hospital Central De La Defensa Gomez Ulla", - "Hospital Universitario Príncipe De Asturias", - "Hospital De La Fuenfría", - "Hh. Hh. Sgdo. C. De Jesús. Complejo Asistencial Benito Menni", - "Centro San Juan De Dios", - "Hospital Monográfico Asepeyo De Traumat. Cirugía Y Rehabilitación", - "Hospital Guadarrama", - "Hospital Universitario Severo Ochoa", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain-1 Luna", - "Fremap Hospital Y Centro De Rehabilitación De Majadahonda", - "Hospital Universitario De Móstoles", - "Hospital El Escorial", - "Hospital Virgen De La Poveda", - "Hospital De Madrid", - "Hospital Universitario De Getafe", - "Clínica Isadora", - "Hospital Universitario Moncloa", - "Hospital Universitario Fundación Alcorcón", - "Clinica Cemtro", - "Hospital Universitario Hm Montepríncipe", - "Centro Oncológico Md Anderson International España", - "Hospital Quironsalud Sur", - "Hospital Universitario De Fuenlabrada", - "Hospital Universitario Hm Torrelodones", - "Complejo Universitario La Paz", - "Hospital La Moraleja", - "Hospital Los Madroños", - "Hospital Quirónsalud Madrid", - "Hospital Centro De Cuidados Laguna", - "Hospital Universitario Madrid Sanchinarro", - "Hospital Universitario Infanta Elena", - "Vitas Nisa Pardo De Aravaca.", - "Hospital Universitario Infanta Sofía", - "Hospital Universitario Del Henares", - "Hospital Universitario Infanta Leonor", - "Hospital Universitario Del Sureste", - "Hospital Universitario Del Tajo", - "Hospital Universitario Infanta Cristina", - "Hospital Universitario Puerta De Hierro Majadahonda", - "Casta Guadarrama", - "Hospital Universitario De Torrejón", - "Hospital Rey Juan Carlos", - "Hospital General De Villalba", - "Hm Universitario Puerta Del Sur", - "Hm Valles", - "Hospital Casaverde De Madrid", - "Clínica Universidad De Navarra", - "Complejo Hospitalario Universitario Infanta Leonor", - "Clínica San Vicente", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain-2 Aragón", - "Hospital General Del H.U.R. De Málaga", - "Hospital Virgen De La Victoria", - "Hospital Civil", - "Centro Asistencial San Juan De Dios", - "Centro Asistencial Hnas. Hosp. Del Sagrado Corazón De Jesús", - "Hospital Vithas Parque San Antonio", - "Hospital El Ángel", - "Hospital Doctor Gálvez", - "Clínica De La Encarnación", - "Hospital Psiquiátrico San Francisco De Asís", - "Clínica Nuestra Sra. Del Pilar", - "Hospital De Antequera", - "Hospital Quironsalud Marbella", - "Hospital De La Axarquía", - "Hospital Marítimo De Torremolinos", - "Hospital Universitario Regional De Málaga", - "Hospital Universitario Virgen De La Victoria", - "Hospital Materno-Infantil Del H.U.R. De Málaga", - "Hospital Costa Del Sol", - "Hospital F.A.C. Doctor Pascual", - "Clínica El Seranil", - "Hc Marbella International Hospital", - "Hospital Humanline Banús", - "Clínica Rincón", - "Hospiten Estepona", - "Fundación Cudeca. Centro De Cuidados Paliativos", - "Xanit Hospital Internacional", - "Comunidad Terapéutica San Antonio", - "Hospital De Alta Resolución De Benalmádena", - "Hospital Quironsalud Málaga", - "Cenyt Hospital", - "Clínica Ochoa", - "Centro De Reproducción Asistida De Marbella (Ceram)", - "Helicópteros Sanitarios Hospital", - "Hospital De La Serranía", - "Hospital Valle Del Guadalhorce De Cártama", - "Hospital Clínico Universitario Virgen De La Arrixaca", - "Hospital General Universitario Reina Sofía", - "Plataforma de Medicina Computacional, Fundación Progreso y Salud", - "Hospital Psiquiátrico Roman Alberca", - "Hospital Quirónsalud Murcia", - "Hospital La Vega", - "Hospital Mesa Del Castillo", - "Sanatorio Doctor Muñoz S.L.", - "Clínica Médico-Quirúrgica San José, S.A.", - "Hospital Comarcal Del Noroeste", - "Clínica Doctor Bernal S.L.", - "Hospital Santa María Del Rosell", - "Santo Y Real Hospital De Caridad", - "Hospital Nuestra Señora Del Perpetuo Socorro", - "Fundacion Hospital Real Piedad", - "Hospital Virgen Del Alcázar De Lorca", - "Hospital General Universitario Los Arcos Del Mar Menor", - "Hospital Virgen Del Castillo", - "Hospital Rafael Méndez", - "Hospital General Universitario J.M. Morales Meseguer", - "Hospital Ibermutuamur-Patología Laboral", - "Hospital De La Vega Lorenzo Guirao", - "Hospital De Molina", - "Clínica San Felipe Del Mediterráneo", - "Hospital De Cuidados Medios Villademar", - "Residencia Los Almendros", - "Complejo Hospitalario Universitario De Cartagena", - "Hospital General Universitario Santa Lucia", - "Consorcio LUCIA (SACYL,ITACYL UBU,UVa)", - "Hospital Perpetuo Socorro Alameda", - "Hospital C.M.V. Caridad Cartagena", - "Centro San Francisco Javier", - "Clinica Psiquiatrica Padre Menni", - "Clinica Universidad De Navarra", - "CATLAB", - "Clinica San Miguel", - "Clínica San Fermín", - "Centro Hospitalario Benito Menni", - "Hospital García Orcoyen", - "Hospital Reina Sofía", - "Clínica Psicogeriátrica Josefina Arregui", - "Complejo Hospitalario De Navarra", - "Complexo Hospitalario Universitario De Ourense", - "Hospital Universitario Cristal", - "Hospital Santo Cristo De Piñor (Psiquiatrico)", - "Hospital Santa Maria Nai", - "Centro Medico El Carmen", - "Hospital De Valdeorras", - "Hospital De Verin", - "Clinica Santa Teresa", - "Hospital Monte Naranco", - "Centro Médico De Asturias", - "Clínica Asturias", - "Clínica San Rafael", - "Hospital Universitario San Agustín", - "Fundación Hospital De Avilés", + "Hestia San Jose", + "Hm El Pilar", + "Hm Galvez", + "Hm Hospitales 1.989, S.A.", + "Hm Malaga", + "Hm Modelo-Belen", + "Hm Nou Delfos", + "Hm Regla", + "Hospital 9 De Octubre", + "Hospital Aita Menni", + "Hospital Alto Guadalquivir", + "Hospital Arnau De Vilanova", + "Hospital Asepeyo Madrid", + "Hospital Asilo De La Real Piedad De Cehegin", + "Hospital Asociado Universitario Guadarrama", + "Hospital Asociado Universitario Virgen De La Poveda", + "Hospital Beata Maria Ana", + "Hospital Begoña", + "Hospital Bidasoa (Osi Bidasoa)", + "Hospital C. M. Virgen De La Caridad Cartagena", + "Hospital Campo Arañuelo", + "Hospital Can Misses", + "Hospital Carlos Iii", "Hospital Carmen Y Severo Ochoa", - "Hospital Comarcal De Jarrio", - "Hospital De Cabueñes", - "Sanatorio Nuestra Señora De Covadonga", - "Fundación Hospital De Jove", - "Hospital Begoña De Gijón, S.L.", - "Hospital Valle Del Nalón", - "Fundació Fisabio", - "Fundación Sanatorio Adaro", - "Hospital V. Álvarez Buylla", - "Hospital Universitario Central De Asturias", - "Hospital Del Oriente De Asturias Francisco Grande Covián", - "Hospital De Luarca -Asistencia Médica Occidentalsl", - "Instituto Salud Mental Pérez-Espinosa Oria, S.L.", - "Clínica Psiquiátrica Somió", - "Clínica Cirugía Plástica Y Estética Fernández Y Fernández Cossío", - "Hospital Gijón", - "Centro Terapéutico Vista Alegre", - "Instituto Oftalmológico Fernández -Vega", - "Hospital Rio Carrión", - "Hospital San Telmo", - "Hospital Psiquiatrico San Luis", - "Área Psiquiátrica Del Centro Asistencial San Juan De Dios", - "Hospital Recoletas De Palencia", - "Complejo Asistencial Universitario De Palencia", - "Hospital Universitario Materno-Infantil De Canarias", - "Hospital Universitario Insular De Gran Canaria", - "Unidades Clínicas Y De Rehabilitación (Ucyr)", - "Sanatorio Dermatológico Regional", - "Fundación Benéfica Canaria Casa Asilo San José", - "Vithas Hospital Santa Catalina", - "Hospital Policlínico La Paloma, S.A.", - "Instituto Policlínico Cajal, S.L.", - "Hospital San Roque Las Palmas De Gran Canaria", - "Clínica Bandama", - "Hospital Doctor José Molina Orosa", - "Hospital Insular De Lanzarote", - "Hospital General De Fuerteventura", - "Quinta Médica De Reposo, S.A.", - "Hospital De San Roque Guía", + "Hospital Casaverde Valladolid", + "Hospital Catolico Casa De Salud", + "Hospital Central De La Cruz Roja, San Jose Y Santa Adela", + "Hospital Central De La Defensa Gomez Ulla", + "Hospital Centro De Andalucia", + "Hospital Centro De Cuidados Laguna", + "Hospital Centro Medico Virgen De La Caridad Caravaca", + "Hospital Ciudad De Coria", "Hospital Ciudad De Telde", - "Complejo Hospitalario Universitario Insular-Materno Infantil", - "Hospital Clínica Roca (Roca Gestión Hospitalaria)", - "Hospital Universitario De Gran Canaria Dr. Negrín", - "Hospiten Lanzarote (Clínicas Del Sur S.L.U.)", - "Complejo Hospitalario Universitario De Gran Canaria Dr. Negrín", - "Hospital San Roque Maspalomas", - "Clínica Parque Fuerteventura", - "Clinica Jorgani", - "Hospital Universitario Montecelo", - "Gerencia de Atención Primaria Pontevedra Sur", - "Hospital Provincial De Pontevedra", - "Hestia Santa Maria", - "Hospital Quironsalud Miguel Dominguez", - "Instituto De Neuro-Rehabilitacion Quironsalud Pontevedra", - "Hospital Meixoeiro", - "Hospital Nicolas Peña", - "Fremap, Hospital De Vigo", - "Hospital Povisa", - "Hospital Hm Vigo", - "Vithas Hospital Nosa Señora De Fatima", - "Concheiro Centro Medico Quirurgico", - "Centro Medico Pintado", - "Sanatorio Psiquiatrico San Jose", - "Clinica Residencia El Pinar", - "Complexo Hospitalario Universitario De Pontevedra", - "Hospital Do Salnes", - "Complexo Hospitalario Universitario De Vigo", - "Hospital Universitario Alvaro Cunqueiro", - "Plataforma de Genómica y Bioinformática", - "Complejo Asistencial Universitario De Salamanca", - "Hospital Universitario De Salamanca", - "Hospital General De La Santísima Trinidad", - "Hospital Los Montalvos", - "Complejo Hospitalario Universitario Ntra. Sra. De Candelaria", - "Hospital Universitario Nuestra Señora De Candelaria", - "Hospital De Ofra", - "Instituto Tecnológico y de Energías Renovables, S.A. (ITER, S.A.)", - "Unidades Clínicas Y De Rehabilitación De Salud Mental", - "Hospital Febles Campos", - "Hospital Quirón Tenerife", - "Vithas Hospital Santa Cruz", - "Clínica Parque, S.A.", - "Hospiten Sur", - "Hospital Universitario De Canarias (H.U.C)", - "Hospital De La Santísima Trinidad", - "Clínica Vida", - "Hospital Bellevue", - "Hospital Nuestra Señora De Guadalupe", - "Hospital Nuestra Señora De Los Dolores", - "Hospital Insular Ntra. Sra. De Los Reyes", - "Hospital Quirón Costa Adeje", - "Hospital Rambla S.L.", - "Hospital General De La Palma", - "Complejo Hospitalario Universitario De Canarias", - "Hospital Del Norte", - "Hospital Del Sur", - "Clínica Tara", - "Hospital Universitario Marqués De Valdecilla", - "Hospital Ramón Negrete", - "Hospital Santa Clotilde - Orden Hospitalaria San Juan De Dios.", - "Centro Hospitalario Padre Menni", + "Hospital Civil", + "Hospital Clinic De Barcelona", + "Hospital Clinic De Barcelona, Seu Plato", + "Hospital Clinic De Barcelona, Seu Sabino De Arana", + "Hospital Clinica Benidorm", + "Hospital Clinico Universitario De Valencia", + "Hospital Clinico Universitario De Valladolid", + "Hospital Clinico Universitario Lozano Blesa", + "Hospital Clinico Universitario Virgen De La Arrixaca", + "Hospital Comarcal", + "Hospital Comarcal D'Amposta", + "Hospital Comarcal De Blanes", + "Hospital Comarcal De L'Alt Penedes", "Hospital Comarcal De Laredo", - "Hospital Sierrallana", - "Clínica Mompía, S.A.U.", - "Complejo Asistencial De Segovia", - "Hospital General De Segovia", - "Hospital Recoletas Segovia Ntra. Sra. De La Misericordia", - "Unidad De Rehabilitación Psiquiátrica Ntra. Sra. De La Fuencisla", - "Hospital General Del H.U. Virgen Del Rocío", - "Hospital Virgen De Valme", - "Hospital Virgen Macarena", - "Hospital San Lázaro", - "Hospital Victoria Eugenia De La Cruz Roja Española", - "Hospital San Juan De Dios De Sevilla", - "Hospital Duques Del Infantado", - "Clínica Santa Isabel", - "Hospital Quironsalud Sagrado Corazón", - "Hospital Fátima", - "Hospital Quironsalud Infanta Luisa", - "Clínica Nuestra Señora De Aránzazu", - "Residencia De Salud Mental Nuestra Señora Del Carmen", - "Hospital El Tomillar", - "Hospital De Alta Resolución De Morón De La Frontera", - "Hospital La Merced", - "Hospital Universitario Virgen Del Rocío", - "Microbiología. Hospital Universitario Virgen del Rocio", - "Hospital Universitario Virgen Macarena", - "Hospital Universitario Virgen De Valme", - "Fremap, Hospital Y Centro De Rehabilitación De Sevilla", - "Hospital Psiquiátrico Penitenciario", - "Hospital San Juan De Dios Del Aljarafe", - "Hospital Nisa Sevilla-Aljarafe", - "Hospital De Alta Resolución De Utrera", - "Hospital De Alta Resolución Sierra Norte", - "Hospital Viamed Santa Ángela De La Cruz", - "Hospital De Alta Resolución De Écija", - "Clínica De Salud Mental Miguel De Mañara", - "Hospital De Rehabilitación Y Traumatología Virgen Del Rocío", - "Hospital De Alta Resolución De Lebrija", - "Hospital Infantil", + "Hospital Comarcal De Vinaros", + "Hospital Comarcal Del Noroeste", + "Hospital Comarcal Del Pallars", + "Hospital Comarcal D´Inca", + "Hospital Comarcal Mora D'Ebre", + "Hospital Comarcal Sant Jaume De Calella", + "Hospital Cruz Roja De Bilbao - Victoria Eugenia", + "Hospital Cruz Roja De Cordoba", + "Hospital Cruz Roja Gijon", + "Hospital D'Igualada", + "Hospital D'Olot I Comarcal De La Garrotxa", + "Hospital De Alcañiz", + "Hospital De Alta Resolucion De Alcala La Real", + "Hospital De Alta Resolucion De Alcaudete", + "Hospital De Alta Resolucion De Benalmadena", + "Hospital De Alta Resolucion De Ecija", + "Hospital De Alta Resolucion De Especialidades De La Janda", + "Hospital De Alta Resolucion De Estepona", + "Hospital De Alta Resolucion De Guadix", + "Hospital De Alta Resolucion De Lebrija", + "Hospital De Alta Resolucion De Loja", + "Hospital De Alta Resolucion De Moron De La Frontera", + "Hospital De Alta Resolucion De Puente Genil", + "Hospital De Alta Resolucion De Utrera", + "Hospital De Alta Resolucion Eltoyo", + "Hospital De Alta Resolucion Sierra De Segura", + "Hospital De Alta Resolucion Sierra Norte", + "Hospital De Alta Resolucion Valle Del Guadiato", + "Hospital De Antequera", + "Hospital De Barbastro", + "Hospital De Barcelona", + "Hospital De Baza", + "Hospital De Benavente Complejo Asistencial De Zamora", + "Hospital De Berga", + "Hospital De Bermeo", + "Hospital De Calahorra", + "Hospital De Campdevanol", + "Hospital De Cantoblanco", + "Hospital De Cerdanya / Hopital De Cerdagne", + "Hospital De Cronicos De Mislata (Antiguo Hospital Militar De Valencia)", + "Hospital De Cuidados Medios Villademar", + "Hospital De Denia", + "Hospital De Emergencia Covid 19", + "Hospital De Figueres", + "Hospital De Formentera", + "Hospital De Gorliz", + "Hospital De Hellin", + "Hospital De Jaca Salud", + "Hospital De Jarrio", + "Hospital De Jove", + "Hospital De L'Esperança.", + "Hospital De La Axarquia", + "Hospital De La Creu Roja Espanyola", + "Hospital De La Fuenfria", + "Hospital De La Inmaculada Concepcion", + "Hospital De La Malva-Rosa", "Hospital De La Mujer", - "Hospital Virgen Del Mirón", - "Complejo Asistencial De Soria", - "Hospital Universitari Joan Xxiii De Tarragona", - "Hospital Sociosanitari Francolí", + "Hospital De La Reina", + "Hospital De La Rioja", + "Hospital De La Santa Creu", + "Hospital De La Santa Creu I Sant Pau", + "Hospital De La Serrania", + "Hospital De La V.O.T. De San Francisco De Asis", + "Hospital De La Vega Lorenzo Guirao", + "Hospital De Leon Complejo Asistencial Universitario De Leon", + "Hospital De Leza", + "Hospital De Llevant", + "Hospital De Lliria", + "Hospital De Luarca", + "Hospital De Manacor", + "Hospital De Manises", + "Hospital De Mataro", + "Hospital De Mendaro (Osi Bajo Deba)", + "Hospital De Merida", + "Hospital De Mollet", + "Hospital De Montilla", + "Hospital De Neurotraumatologia Y Rehabilitacion Del H.U. Virgen De Las Nieves", + "Hospital De Ofra", + "Hospital De Palamos", + "Hospital De Rehabilitacion Psiquiatrica Prisma", + "Hospital De Rehabilitacion Y Traumatologia Del H.U. Virgen Del Rocio", + "Hospital De Riotinto", + "Hospital De Sabadell", + "Hospital De Sagunto", + "Hospital De Salud Mental Casta Salud Arevalo", + "Hospital De Salud Mental Provincial", + "Hospital De San Antonio", + "Hospital De San Jose", + "Hospital De San Rafael", + "Hospital De Sant Andreu", + "Hospital De Sant Celoni.", + "Hospital De Sant Jaume", + "Hospital De Sant Joan De Deu (Manresa)", + "Hospital De Sant Joan De Deu.", + "Hospital De Sant Joan Despi Moises Broggi", + "Hospital De Sant Llatzer", "Hospital De Sant Pau I Santa Tecla", - "Hospital Viamed Monegal", - "Clínica Activa Mútua 2008", - "Hospital Comarcal Móra D'Ebre", - "Hospital Universitari De Sant Joan De Reus", - "Centre Mq Reus", - "Villablanca Serveis Assistencials, Sa", - "Institut Pere Mata, S.A", + "Hospital De Terrassa.", "Hospital De Tortosa Verge De La Cinta", - "Clínica Terres De L'Ebre", - "Policlínica Comarcal Del Vendrell.", - "Pius Hospital De Valls", - "Residència Alt Camp", - "Centre Sociosanitari Ciutat De Reus", - "Hospital Comarcal D'Amposta", - "Centre Sociosanitari Llevant", - "Residència Vila-Seca", - "Unitat Polivalent En Salut Mental D'Amposta", + "Hospital De Viladecans", + "Hospital De Zafra", + "Hospital De Zaldibar", + "Hospital De Zamudio", + "Hospital De Zumarraga (Osi Goierri - Alto Urola)", + "Hospital Del Mar", + "Hospital Del Norte", + "Hospital Del Oriente De Asturias Francisco Grande Covian", + "Hospital Del Sur", "Hospital Del Vendrell", - "Centre Sociosanitari I Residència Assistida Salou", - "Residència Santa Tecla Ponent", - "Unitat De Referència De Psiquiatria I Trastorns De La Conducta Alimentària (Urpi)", - "Hospital Obispo Polanco", - "Centro De Rehabilitacion Psicosocial San Juan De Dios", - "Hospital De Alcañiz", - "Hospital Virgen De La Salud", - "Hospital Geriátrico Virgen Del Valle", - "Hospital Nacional De Parapléjicos", - "Hospital Provincial Nuestra Señora De La Misericordia", - "Hospital General Nuestra Señora Del Prado", - "Consejería de Sanidad", - "Clínica Marazuela, S.A.", - "Complejo Hospitalario De Toledo", - "Hospital Laboral Solimat Mutua Colaboradora Con La Ss Nº 72", - "Quirón Salud Toledo", - "Hospital Universitario Y Politécnico La Fe", - "Hospital Universitario Dr. Peset Aleixandre", - "Hospital Arnau De Vilanova", - "Hospital Clínico Universitario De Valencia", - "Hospital De La Malva-Rosa", - "Consorcio Hospital General Universitario De Valencia", - "Hospital Católico Casa De Salud", - "Hospital Nisa Valencia Al Mar", - "Fundación Instituto Valenciano De Oncología", - "Hospital Virgen Del Consuelo", - "Hospital Quirón Valencia", - "Hospital Psiquiátrico Provincial", - "Casa De Reposo San Onofre", + "Hospital Doctor Moliner", + "Hospital Doctor Oloriz", + "Hospital Doctor Sagaz", + "Hospital Don Benito-Villanueva De La Serena", + "Hospital Dos De Maig", + "Hospital Egarsat Sant Honorat", + "Hospital El Angel", + "Hospital El Bierzo", + "Hospital El Escorial", + "Hospital El Pilar", + "Hospital El Tomillar", + "Hospital Ernest Lluch Martin", + "Hospital Fatima", "Hospital Francesc De Borja De Gandia", - "Hospital Lluís Alcanyís De Xàtiva", + "Hospital Fuensanta", + "Hospital Fuente Bermeja- Complejo Asistencial Universitario De Burgos-", + "Hospital G. Universitario J.M. Morales Meseguer", + "Hospital Galdakao-Usansolo Asociado A La Upv/Ehu", + "Hospital Garcia Orcoyen", + "Hospital General De Almansa", + "Hospital General De Fuerteventura", + "Hospital General De Granollers.", + "Hospital General De L'Hospitalet", + "Hospital General De La Defensa En Zaragoza", + "Hospital General De La Santisima Trinidad", + "Hospital General De Llerena", + "Hospital General De Mallorca", "Hospital General De Ontinyent", - "Hospital Intermutual De Levante", - "Hospital De Sagunto", - "Hospital Doctor Moliner", "Hospital General De Requena", - "Hospital 9 De Octubre", - "Centro Médico Gandia", - "Hospital Nisa Aguas Vivas", - "Clinica Fontana", - "Hospital Universitario De La Ribera", - "Hospital Pare Jofré", - "Hospital De Manises", - "Hospital De Crónicos De Mislata (Antiguo Hospital Militar De Valencia)", - "Hospital De Llíria", - "Imed Valencia", - "Unidad De Desintoxicación Hospitalaria", - "Hospital Universitario Rio Hortega", - "Hospital Clínico Universitario De Valladolid", - "Sanatorio Sagrado Corazón", - "Hospital Medina Del Campo", - "Hospital De Valladolid Felipe Ii", - "Hospital Campo Grande", - "Hospital Santa Marina", + "Hospital General De Segovia Complejo Asistencial De Segovia", + "Hospital General De Tomelloso", + "Hospital General De Valdepeñas", + "Hospital General De Villalba", + "Hospital General De Villarrobledo", + "Hospital General La Mancha Centro", + "Hospital General Nuestra Señora Del Prado", + "Hospital General Penitenciari", + "Hospital General Santa Maria Del Puerto", + "Hospital General Universitario De Albacete", + "Hospital General Universitario De Castellon", + "Hospital General Universitario De Ciudad Real", + "Hospital General Universitario De Elche", + "Hospital General Universitario De Elda-Virgen De La Salud", + "Hospital General Universitario Dr. Balmis", + "Hospital General Universitario Gregorio Marañon", + "Hospital General Universitario Los Arcos Del Mar Menor", + "Hospital General Universitario Reina Sofia", + "Hospital General Universitario Santa Lucia", + "Hospital Geriatrico Virgen Del Valle", + "Hospital Gijon", + "Hospital Hernan Cortes Miraflores", + "Hospital Hestia Madrid", + "Hospital Hla Universitario Moncloa", + "Hospital Hm Nuevo Belen", + "Hospital Hm Rosaleda-Hm La Esperanza", + "Hospital Hm San Francisco", + "Hospital Hm Valles", + "Hospital Ibermutuamur - Patologia Laboral", + "Hospital Imed Elche", + "Hospital Imed Gandia", + "Hospital Imed Levante", + "Hospital Imed San Jorge", + "Hospital Infanta Elena", + "Hospital Infanta Margarita", + "Hospital Infantil", + "Hospital Infantil Universitario Niño Jesus", + "Hospital Insular De Lanzarote", + "Hospital Insular Nuestra Señora De Los Reyes", "Hospital Intermutual De Euskadi", - "Clínica Ercilla Mutualia", - "Hospital Cruz Roja De Bilbao", - "Sanatorio Bilbaíno", - "Hospital De Basurto", - "Imq Clínica Virgen Blanca", - "Clínica Guimon S.A.", - "Clínica Indautxu", - "Hospital Universitario De Cruces", - "Osi Barakaldo-Sestao", - "Hospital San Eloy", - "Red De Salud Mental De Bizkaia (Hospital De Bermeo)", - "Hospital Galdakao-Usansolo", - "Hospital Gorliz", - "Red De Salud Mental De Bizkaia (Hospital De Zaldibar)", - "Red De Salud Mental De Bizkaia (Hospital De Zamudio)", - "Avances Médicos S.A", + "Hospital Intermutual De Levante", + "Hospital Internacional Hcb Denia", + "Hospital Internacional Hm Santa Elena", + "Hospital Jaume Nadal Meroles", + "Hospital Jerez Puerta Del Sur", + "Hospital Joan March", + "Hospital Juaneda Muro", + "Hospital La Antigua", + "Hospital La Inmaculada", + "Hospital La Magdalena", + "Hospital La Merced", + "Hospital La Milagrosa S.A.", + "Hospital La Paloma", + "Hospital La Pedrera", + "Hospital La Vega Grupo Hla", + "Hospital Latorre", + "Hospital Lluis Alcanyis De Xativa", + "Hospital Los Madroños", + "Hospital Los Montalvos (Complejo Asistencial Universitario De Salamanca)", + "Hospital Los Morales", + "Hospital Mare De Deu De La Merce", + "Hospital Marina Baixa De La Vila Joiosa", + "Hospital Maritimo De Torremolinos", + "Hospital Materno - Infantil Del H.U. Reina Sofia", + "Hospital Materno Infantil", + "Hospital Materno Infantil Del H.U.R. De Malaga", + "Hospital Materno-Infantil", + "Hospital Materno-Infantil Del H.U. De Jaen", + "Hospital Materno-Infantil Del H.U. Virgen De Las Nieves", + "Hospital Mateu Orfila", + "Hospital Maz", + "Hospital Md Anderson Cancer Center Madrid", + "Hospital Medimar Internacional", + "Hospital Medina Del Campo", + "Hospital Mediterraneo", + "Hospital Mesa Del Castillo", + "Hospital Metropolitano De Jaen", + "Hospital Mompia", + "Hospital Monte Naranco", + "Hospital Monte San Isidro Complejo Asistencial Universitario De Leon", + "Hospital Municipal De Badalona", + "Hospital Mutua Montañesa", + "Hospital Nacional De Paraplejicos", + "Hospital Neurotraumatologico Del H.U. De Jaen", + "Hospital Nisa Aguas Vivas", + "Hospital Ntra. Sra. Del Perpetuo Socorro", + "Hospital Nuestra Señora De America", + "Hospital Nuestra Señora De Gracia", + "Hospital Nuestra Señora De Guadalupe", + "Hospital Nuestra Señora De La Salud Hla Sl", + "Hospital Nuestra Señora De Sonsoles", + "Hospital Obispo Polanco", + "Hospital Ochoa", + "Hospital Palma Del Rio", + "Hospital Pardo De Aravaca", + "Hospital Pare Jofre", + "Hospital Parque", + "Hospital Parque Fuerteventura", + "Hospital Parque Marazuela", + "Hospital Parque San Francisco", + "Hospital Parque Vegas Altas", + "Hospital Perpetuo Socorro", + "Hospital Perpetuo Socorro Alameda", + "Hospital Polivalente Anexo Juan Carlos I", + "Hospital Provincial", + "Hospital Provincial De Avila", + "Hospital Provincial De Zamora Complejo Asistencial De Zamora", + "Hospital Provincial Ntra.Sra.De La Misericordia", + "Hospital Psiquiatric", + "Hospital Psiquiatrico Doctor Rodriguez Lafora", + "Hospital Psiquiatrico Penitenciario", + "Hospital Psiquiatrico Penitenciario De Fontcalent", + "Hospital Psiquiatrico Roman Alberca", + "Hospital Psiquiatrico San Francisco De Asis", + "Hospital Psiquiatrico San Juan De Dios", + "Hospital Psiquiatrico San Luis", + "Hospital Publico Da Barbanza", + "Hospital Publico Da Mariña", + "Hospital Publico De Monforte", + "Hospital Publico De Valdeorras", + "Hospital Publico De Verin", + "Hospital Publico Do Salnes", + "Hospital Publico Virxe Da Xunqueira", + "Hospital Puerta De Andalucia", + "Hospital Punta De Europa", + "Hospital Quiron Campo De Gibraltar", + "Hospital Quiron Salud Costa Adeje", + "Hospital Quiron Salud Del Valles - Clinica Del Valles", + "Hospital Quiron Salud Lugo", + "Hospital Quiron Salud Tenerife", + "Hospital Quiron Salud Valle Del Henares", + "Hospital Quironsalud A Coruña", + "Hospital Quironsalud Albacete", + "Hospital Quironsalud Barcelona", "Hospital Quironsalud Bizkaia", - "Clínica Imq Zorrotzaurre", - "Hospital Urduliz Ospitalea", - "Hospital Virgen De La Concha", - "Hospital Provincial De Zamora", - "Hospital De Benavente", - "Complejo Asistencial De Zamora", + "Hospital Quironsalud Caceres", + "Hospital Quironsalud Ciudad Real", + "Hospital Quironsalud Clideba", + "Hospital Quironsalud Cordoba", + "Hospital Quironsalud Huelva", + "Hospital Quironsalud Infanta Luisa", + "Hospital Quironsalud Malaga", + "Hospital Quironsalud Marbella", + "Hospital Quironsalud Murcia", + "Hospital Quironsalud Palmaplanas", + "Hospital Quironsalud Sagrado Corazon", + "Hospital Quironsalud San Jose", + "Hospital Quironsalud Santa Cristina", + "Hospital Quironsalud Son Veri", + "Hospital Quironsalud Sur", + "Hospital Quironsalud Toledo", + "Hospital Quironsalud Torrevieja", + "Hospital Quironsalud Valencia", + "Hospital Quironsalud Vida", + "Hospital Quironsalud Vitoria", + "Hospital Quironsalud Zaragoza", + "Hospital Rafael Mendez", + "Hospital Recoletas Cuenca, S.L.U.", + "Hospital Recoletas De Burgos", + "Hospital Recoletas De Palencia", "Hospital Recoletas De Zamora", - "Hospital Clínico Universitario Lozano Blesa", - "Hospital Universitario Miguel Servet", + "Hospital Recoletas Marbella Slu", + "Hospital Recoletas Salud Campo Grande", + "Hospital Recoletas Salud Felipe Ii", + "Hospital Recoletas Segovia Nuestra Señora De La Misericordia", + "Hospital Reina Sofia", + "Hospital Residencia Sant Camil - Consorci Sanitari De L'Alt Penedes I Garraf", + "Hospital Ribera Almendralejo", + "Hospital Ribera Badajoz", + "Hospital Ribera Covadonga", + "Hospital Ribera Juan Cardona", + "Hospital Ribera Polusa", + "Hospital Ribera Povisa", + "Hospital Ricardo Bermingham", + "Hospital Rio Carrion Complejo Asistencial Universitario De Palencia", "Hospital Royo Villanova", - "Centro de Investigación Biomédica de Aragón", - "Centro De Rehabilitacion Psicosocial Nuestra Señora Del Pilar", - "Hospital Nuestra Señora De Gracia", - "Hospital Maz", - "Clínica Montpelier Grupo Hla, S.A.U", - "Centro Neuropsiquiátrico Nuestra Señora Del Carmen", - "Hospital Quironsalud Zaragoza", - "Clínica Nuestra Señora Del Pilar", - "Hospital General De La Defensa De Zaragoza", - "Hospital Ernest Lluch Martin", - "Unidad De Rehabilitacion De Larga Estancia", - "Unidad Rehabilitadora De Media Estancia Profesor Rey Ardid", - "Hospital De Rehabilitacion Psiquiatrica Prisma", - "Centro Sanitario Cinco Villas", - "Hospital Viamed Montecanal", + "Hospital Ruber Internacional", + "Hospital Ruber Juan Bravo", + "Hospital Sagrado Corazon De Jesus", + "Hospital San Agustin", + "Hospital San Camilo", + "Hospital San Carlos De Denia Grupo Hla", + "Hospital San Carlos De San Fernando", + "Hospital San Eloy", + "Hospital San Francisco De Asis", + "Hospital San Jose", + "Hospital San Jose Solimat", + "Hospital San Juan De Dios", + "Hospital San Juan De Dios Burgos", + "Hospital San Juan De Dios De Cordoba", + "Hospital San Juan De Dios De Sevilla", + "Hospital San Juan De Dios Del Aljarafe", + "Hospital San Juan De Dios Donostia", + "Hospital San Juan De Dios Leon", + "Hospital San Juan De Dios Tenerife", + "Hospital San Juan De La Cruz", + "Hospital San Juan Grande", + "Hospital San Lazaro", + "Hospital San Pedro De Alcantara", + "Hospital San Rafael", + "Hospital San Roque De Guia", + "Hospital San Telmo ,Complejo Asistencial Universitario De Palencia", + "Hospital Sanitas Cima", + "Hospital Sant Antoni Abat - Consorci Sanitari Del Garraf.", + "Hospital Sant Joan De Deu", + "Hospital Sant Joan De Deu Inca", + "Hospital Sant Joan De Deu Lleida", + "Hospital Sant Vicent Del Raspeig", + "Hospital Santa Ana", + "Hospital Santa Barbara", + "Hospital Santa Barbara ,Complejo Asistencial De Soria", + "Hospital Santa Caterina-Ias", + "Hospital Santa Clotilde", + "Hospital Santa Isabel Complejo Asistencial Universitario De Leon", + "Hospital Santa Maria", + "Hospital Santa Maria Del Rosell", + "Hospital Santa Marina", + "Hospital Santa Teresa", + "Hospital Santiago Apostol", + "Hospital Santos Reyes", + "Hospital Siberia-Serena", + "Hospital Sierrallana", + "Hospital Sociosanitari De Lloret De Mar", + "Hospital Sociosanitari De Mollet", + "Hospital Sociosanitari Francoli", + "Hospital Sociosanitari Mutuam Girona", + "Hospital Sociosanitari Mutuam Guell", + "Hospital Sociosanitari Pere Virgili", + "Hospital Son Llatzer", + "Hospital Tierra De Barros", + "Hospital Universitari Arnau De Vilanova De Lleida", + "Hospital Universitari De Bellvitge", + "Hospital Universitari De Girona Dr. Josep Trueta", + "Hospital Universitari De Sant Joan De Reus", + "Hospital Universitari De Vic", + "Hospital Universitari General De Catalunya", + "Hospital Universitari Germans Trias I Pujol De Badalona", + "Hospital Universitari Joan Xxiii De Tarragona", + "Hospital Universitari Mutua De Terrassa", + "Hospital Universitari Quir¿N Dexeus", + "Hospital Universitari Sagrat Cor", + "Hospital Universitari Son Espases", + "Hospital Universitari Vall D'Hebron", + "Hospital Universitario 12 De Octubre", + "Hospital Universitario Araba (Sede Txagorritxu Y Sede Santiago)", + "Hospital Universitario Basurto", + "Hospital Universitario Central De Asturias", + "Hospital Universitario Clinico San Carlos", + "Hospital Universitario Clinico San Cecilio", + "Hospital Universitario Costa Del Sol", + "Hospital Universitario Cruces", + "Hospital Universitario De Badajoz", + "Hospital Universitario De Burgos Complejo Asistencial Univer. De Burgos", + "Hospital Universitario De Cabueñes", + "Hospital Universitario De Caceres", + "Hospital Universitario De Canarias", "Hospital Universitario De Ceuta", - "Hospital Comarcal de Melilla", + "Hospital Universitario De Fuenlabrada", + "Hospital Universitario De Getafe", + "Hospital Universitario De Gran Canaria Dr. Negrin", + "Hospital Universitario De Guadalajara", + "Hospital Universitario De Jaen", + "Hospital Universitario De Jerez De La Frontera", + "Hospital Universitario De La Linea De La Concepcion", + "Hospital Universitario De La Plana", + "Hospital Universitario De La Princesa", + "Hospital Universitario De La Ribera", + "Hospital Universitario De Mostoles", + "Hospital Universitario De Navarra", + "Hospital Universitario De Poniente", + "Hospital Universitario De Puerto Real", + "Hospital Universitario De Salamanca ,Complejo Asistencial Universitario De", + "Hospital Universitario De Salud Mental Juan Carlos I", + "Hospital Universitario De Toledo (Hut)", + "Hospital Universitario De Torrejon", + "Hospital Universitario De Torrevieja", + "Hospital Universitario Del Henares", + "Hospital Universitario Del Sureste", + "Hospital Universitario Del Tajo", + "Hospital Universitario Donostia", + "Hospital Universitario Dr. Jose Molina Orosa", + "Hospital Universitario Dr. Peset Aleixandre", + "Hospital Universitario Fundacion Alcorcon", + "Hospital Universitario Fundacion Jimenez Diaz", + "Hospital Universitario General De La Palma", + "Hospital Universitario Hm Madrid", + "Hospital Universitario Hm Monteprincipe", + "Hospital Universitario Hm Puerta Del Sur", + "Hospital Universitario Hm Sanchinarro", + "Hospital Universitario Hm Torrelodones", + "Hospital Universitario Hospiten Bellevue", + "Hospital Universitario Hospiten Rambla", + "Hospital Universitario Hospiten Sur", + "Hospital Universitario Infanta Cristina", + "Hospital Universitario Infanta Elena", + "Hospital Universitario Infanta Leonor", + "Hospital Universitario Infanta Sofia", + "Hospital Universitario Jose Germain", + "Hospital Universitario Juan Ramon Jimenez", + "Hospital Universitario La Moraleja", + "Hospital Universitario La Paz", + "Hospital Universitario La Zarzuela", + "Hospital Universitario Lucus Augusti", + "Hospital Universitario Marques De Valdecilla", + "Hospital Universitario Miguel Servet", + "Hospital Universitario Nuestra Señora De Candelaria", + "Hospital Universitario Nuestra Señora Del Perpetuo Socorro", + "Hospital Universitario Principe De Asturias", + "Hospital Universitario Puerta De Hierro Majadahonda", + "Hospital Universitario Puerta Del Mar", + "Hospital Universitario Quironsalud Madrid", + "Hospital Universitario Ramon Y Cajal", + "Hospital Universitario Regional De Malaga", + "Hospital Universitario Reina Sofia", + "Hospital Universitario Rio Hortega", + "Hospital Universitario San Agustin", + "Hospital Universitario San Jorge", + "Hospital Universitario San Juan De Alicante", + "Hospital Universitario San Pedro", + "Hospital Universitario San Roque Las Palmas", + "Hospital Universitario San Roque Maspalomas", + "Hospital Universitario Santa Cristina", + "Hospital Universitario Severo Ochoa", + "Hospital Universitario Torrecardenas", + "Hospital Universitario Vinalopo", + "Hospital Universitario Virgen De La Victoria", + "Hospital Universitario Virgen De Las Nieves", + "Hospital Universitario Virgen De Valme", + "Hospital Universitario Virgen Del Rocio", + "Hospital Universitario Virgen Macarena", + "Hospital Universitario Vithas Las Palmas", + "Hospital Universitario Y Politecnico La Fe", + "Hospital Urduliz Ospitalea", + "Hospital Valle De Guadalhorce De Cartama", + "Hospital Valle De Laciana", + "Hospital Valle De Los Pedroches", + "Hospital Valle Del Nalon", + "Hospital Vazquez Diaz", + "Hospital Vega Baja De Orihuela", + "Hospital Viamed Bahia De Cadiz", + "Hospital Viamed Montecanal", + "Hospital Viamed Novo Sancti Petri", + "Hospital Viamed San Jose", + "Hospital Viamed Santa Angela De La Cruz", + "Hospital Viamed Santa Elena, S.L", + "Hospital Viamed Santiago", + "Hospital Viamed Tarragona", + "Hospital Victoria Eugenia De La Cruz Roja Española", + "Hospital Virgen De Altagracia", + "Hospital Virgen De La Bella", + "Hospital Virgen De La Concha Complejo Asistencial De Zamora", + "Hospital Virgen De La Luz", + "Hospital Virgen De La Torre", + "Hospital Virgen De Las Montañas", + "Hospital Virgen De Los Lirios", + "Hospital Virgen Del Alcazar De Lorca", + "Hospital Virgen Del Camino", + "Hospital Virgen Del Castillo", + "Hospital Virgen Del Mar", + "Hospital Virgen Del Miron ,Complejo Asistencial De Soria", + "Hospital Virgen Del Puerto", + "Hospital Vital Alvarez Buylla", + "Hospital Vithas Castellon", + "Hospital Vithas Granada", + "Hospital Vithas Parque San Antonio", + "Hospital Vithas Sevilla", + "Hospital Vithas Valencia Consuelo", + "Hospital Vithas Vitoria", + "Hospital Vithas Xanit Estepona", + "Hospital Vithas Xanit Internacional", + "Hospiten Clinica Roca San Agustin", + "Hospiten Lanzarote", + "Idcsalud Mostoles Sa", + "Imed Valencia", + "Institut Catala D'Oncologia - Hospital Duran I Reynals", + "Institut Catala D'Oncologia - Hospital Germans Trias I Pujol", + "Institut Catala D'Oncologia Girona - Hospital Josep Trueta", + "Institut Guttmann", + "Institut Pere Mata, S.A", + "Instituto De Enfermedades Neurologicas De Castilla-La Mancha", + "Instituto De Salud Carlos Iii - Centro Nacional De Microbiologia", + "Instituto De Traumatologia De Union De Mutuas (Matepss Nº 267)", + "Instituto Oftalmologico Fernandez-Vega", + "Instituto Provincial De Rehabilitacion", + "Instituto Tecnológico y de Energías Renovables, S.A. (ITER, S.A.)", + "Ita Canet", + "Ita Clinic Bcn", + "Ita Godella", + "Ita Maresme", + "Ivan Mañero Clinic", + "Juaneda Miramar", + "Lab Clínic ICS Camp de Tarragona-Terres de l'Ebre. Hospital Joan XXIII", + "Laboratori De Referencia De Catalunya", + "Laboratorio Echevarne, Sa", + "Lepant Residencial Qgg, Sl", + "Microbiología HUC San Cecilio", + "Microbiología. Hospital Universitario Virgen del Rocio", + "Ministerio Sanidad", + "Mutua Balear", + "Mutua De Granollers, Mutua De Previsio Social A Prima Fixa", + "Mutualia Clinica Pakea", + "Nou Hospital Evangelic", + "Organizacion Sanitaria Integrada Debagoiena", + "Parc Sanitari Sant Joan De Deu - Numancia", + "Parc Sanitari Sant Joan De Deu - Recinte Sant Boi.", + "Parc Sanitari Sant Joan De Deu - Til·Lers", + "Parc Sanitari Sant Joan De Deu - Uhpp - 1", + "Parc Sanitari Sant Joan De Deu - Uhpp - 2", + "Pius Hospital De Valls", + "Plataforma de Genómica y Bioinformática", + "Plataforma de Medicina Computacional, Fundación Progreso y Salud", + "Policlinica Comarcal Del Vendrell.", + "Policlinica Gipuzkoa", + "Policlinica Nuestra Sra. Del Rosario", + "Policlinico Riojano Nuestra Señora De Valvanera", "Presidencia del Gobierno", - "Ministerio Sanidad" + "Prytanis Hospitalet Centre Sociosanitari", + "Prytanis Sant Boi Centre Sociosanitari", + "Quinta Medica De Reposo", + "Red De Salud Mental De Araba (Hospital Psiquiatrico De Araba)", + "Residencia Alt Camp", + "Residencia De Gent Gran Puig D'En Roca", + "Residencia De Salud Mental Nuestra Se?Ora Del Carmen", + "Residencia Geriatrica Maria Gay", + "Residencia L'Estada", + "Residencia Puig-Reig", + "Residencia Santa Susanna", + "Residencia Santa Tecla Ponent", + "Residencia Terraferma", + "Residencia Vila-Seca", + "Ribera Hospital De Molina", + "Ronda De Dalt, Centre Sociosanitari", + "Sanatorio Bilbaino", + "Sanatorio Dr. Muñoz", + "Sanatorio Esquerdo, S.A.", + "Sanatorio Nuestra Señora Del Rosario", + "Sanatorio Sagrado Corazon", + "Sanatorio San Francisco De Borja Fontilles", + "Sanatorio Usurbil, S. L.", + "Santo Y Real Hospital De Caridad", + "Sar Mont Marti", + "Serveis Clinics, S.A.", + "Servicio Madrileño De Salud", + "Servicio de Microbiologia HU Son Espases", + "Servicios Sanitarios Y Asistenciales", + "U.R.R. De Enfermos Psiquicos Alcohete", + "Unidad De Rehabilitacion De Larga Estancia", + "Unidad Rehabilitadora De Media Estancia Profesor Rey Ardid", + "Unidades Clinicas Y De Rehabilitacion De Salud Mental", + "Unitat Polivalent Benito Menni En Salut Mental De L'Hospitalet-El Prat De Llobregat", + "Unitat Polivalent En Salut Mental D'Amposta", + "Unitat Polivalent Salut Mental Barcelona-Nord", + "Unitat Terapeutica-Educativa Acompanya'M", + "Villablanca Serveis Assistencials, Sa", + "Vithas Hospital Montserrat", + "Vithas Hospital Nosa Señora De Fatima", + "Vithas Hospital Perpetuo Internacional", + "Vithas Hospital Santa Cruz" ] }, "submitting_institution": { @@ -6911,15 +6869,19 @@ } } }, - "anyOf": [ - { - "required": [ - "all_in_one_library_kit" - ] - }, + "allOf": [ { - "required": [ - "library_preparation_kit" + "anyOf": [ + { + "required": [ + "all_in_one_library_kit" + ] + }, + { + "required": [ + "library_preparation_kit" + ] + } ] } ] diff --git a/relecov_tools/schema/relecov_schema_EQA.json b/relecov_tools/schema/relecov_schema_EQA.json new file mode 100644 index 000000000..b1a055665 --- /dev/null +++ b/relecov_tools/schema/relecov_schema_EQA.json @@ -0,0 +1,1665 @@ +{ + "$schema": "https://json-schema.org/draft/2020-12/schema", + "$id": "https://github.com/BU-ISCIII/relecov-tools/blob/main/relecov_tools/schema/relecov_schema.json", + "title": "relecov-tools Schema.", + "description": "Json Schema that specifies the structure, content, and validation rules for relecov-tools", + "version": "1.0.0", + "type": "object", + "properties": { + "organism": { + "enum": [ + "Severe acute respiratory syndrome coronavirus 2 [LOINC:LA31065-8]", + "Influenza virus [SNOMED:725894000]" + ], + "examples": [ + "Severe acute respiratory syndrome coronavirus 2 [NCBITaxon:2697049]" + ], + "ontology": "SNOMED:410607006", + "type": "string", + "description": "Taxonomic species name of the organism.", + "classification": "Sample collection and processing", + "label": "Organism", + "fill_mode": "batch", + "header": "Y" + }, + "collecting_lab_sample_id": { + "examples": [ + "1197677" + ], + "ontology": "GENEPIO:0001123", + "type": "string", + "description": "Sample ID provided by the laboratory that collects the sample.", + "classification": "Database Identifiers", + "label": "Sample ID given by originating laboratory", + "fill_mode": "sample", + "header": "Y" + }, + "sample_received_date": { + "examples": [ + "2021-05-13" + ], + "ontology": "SNOMED:281271004", + "type": "string", + "format": "date", + "description": "The date on which the sample was received. YYYY-MM-DD", + "classification": "Sample collection and processing", + "label": "Sample Received Date", + "fill_mode": "sample", + "header": "N" + }, + "enrichment_protocol": { + "classification": "Sequencing", + "description": "Type of enrichment protocol", + "enum": [ + "Amplicon [GENEPIO:0001974]", + "Probes [OMIT:0016121]", + "Custom probes [OMIT:0016112]", + "Custom amplicon [OMIT:0016112]" + ], + "examples": [ + "Amplicon" + ], + "fill_mode": "batch", + "header": "Y", + "label": "Enrichment Protocol", + "ontology": "EFO_0009089", + "type": "string" + }, + "enrichment_panel": { + "enum": [ + "ARTIC", + "Exome 2.5", + "Illumina respiratory Virus Oligo Panel", + "Illumina AmpliSeq Community panel", + "Illumina AmpliSeq SARS-CoV-2 Research Panel for Illumina", + "Illumina FluA/B", + "Ion AmpliSeq SARS-CoV-2 Research Panel", + "xGen SC2 Midnight1200 Amplicon Panel", + "Oxford Nanopore Technologies Midnight Amplicon Panel", + "ViroKey SQ FLEX SARS-CoV-2 Primer Set", + "NEBNext VarSkip Short SARS-CoV-2 primers", + "Illumina Microbial Amplicon Prep-Influenza A/B", + "Illumina Respiratory Pathogen ID/AMR Enrichment Panel", + "Illumina Viral Surveillance Panel v2", + "Twist Bioscience Respiratory Virus Research Panel", + "Universal Influenza A primers (Zhou 2012 protocol)", + "Universal Influenza B primers (Zhou 2014 protocol)", + "Zhou 2009 single-reaction genomic amplification (in-silico)", + "CommonUni12/13 universal primers (Van den Hoecke 2015)", + "No Enrichment" + ], + "examples": [ + "ARTIC" + ], + "ontology": "NGBO:6000323", + "type": "string", + "description": "Commercial or custom panel/assay used for enrichment.", + "classification": "Sequencing", + "label": "Enrichment panel/assay", + "fill_mode": "batch", + "header": "Y" + }, + "enrichment_panel_version": { + "enum": [ + "ARTIC v1", + "ARTIC v2", + "ARTIC v3", + "ARTIC v4", + "ARTIC v4.1", + "ARTIC v4.2", + "ARTIC v4.3", + "ARTIC v4.4", + "ARTIC v4.5", + "ARTIC v4.6", + "ARTIC v4.7", + "ARTIC v4.8", + "ARTIC v4.9", + "ARTIC v4.10", + "ARTIC v5", + "ARTIC v5.1", + "ARTIC v5.2", + "ARTIC v5.3", + "ARTIC v5.3.2", + "Illumina AmpliSeq Community panel", + "Illumina AmpliSeq SARS-CoV-2 Research Panel for Illumina", + "Illumina Respiratory Virus Oligos Panel V1", + "Illumina Respiratory Virus Oligos Panel V2", + "Ion AmpliSeq SARS-CoV-2 Insight", + "xGen SC2 Midnight1200 Amplicon Panel", + "Midnight Amplicon Panel v1", + "Midnight Amplicon Panel v2", + "Midnight Amplicon Panel v3", + "ViroKey SQ FLEX SARS-CoV-2 Primer Set", + "NEBNext VarSkip Short SARS-CoV-2 primers", + "Illumina Viral Surveillance Panel v2", + "Zhou 2009 single-reaction genomic amplification (in-silico) v1.0", + "CommonUni12/13 universal primers (Van den Hoecke 2015) v1.0" + ], + "examples": [ + "ARTIC v4" + ], + "ontology": "0", + "type": "string", + "description": "Version fo the enrichment panel", + "classification": "Sequencing", + "label": "Enrichment panel/assay version", + "fill_mode": "batch", + "header": "Y" + }, + "library_layout": { + "enum": [ + "Single-end [OBI:0002481]", + "Paired-end [OBI:0001852]" + ], + "examples": [ + "Single-end" + ], + "ontology": "NCIT:C175894", + "type": "string", + "description": "Single or paired sequencing configuration", + "classification": "Sequencing", + "label": "Library Layout", + "fill_mode": "batch", + "header": "Y" + }, + "sequence_file_R1": { + "examples": [ + "ABC123_S1_L001_R1_001.fastq.gz" + ], + "ontology": "GENEPIO:0001476", + "type": "string", + "description": "A data field which describes the user-specified filename of the read 1 (r1) file.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Sequence file R1", + "fill_mode": "sample", + "header": "Y" + }, + "sequence_file_R2": { + "examples": [ + "ABC123_S1_L001_R2_002.fastq.gz" + ], + "ontology": "GENEPIO:0001477", + "type": "string", + "description": "A data field which describes the user-specified filename of the read 2 (r2) file. ", + "classification": "Bioinformatics and QC metrics fields", + "label": "Sequence file R2", + "fill_mode": "sample", + "header": "Y" + }, + "sequence_file_R1_md5": { + "examples": [ + "b5242d60471e5a5a97b35531dbbe8c30" + ], + "ontology": "NCIT:C171276", + "type": "string", + "description": "Checksum md5 value to validate successful file transmission in R1.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Sequence fastq R1 md5", + "fill_mode": "sample", + "header": "N" + }, + "sequence_file_R2_md5": { + "examples": [ + "b5242d60471e5a5a97b35531dbbe8c30" + ], + "ontology": "NCIT:C171276", + "type": "string", + "description": "Checksum md5 value to validate successful file transmission in R2.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Sequence fastq R2 md5", + "fill_mode": "sample", + "header": "N" + }, + "sequence_file_path_R1": { + "examples": [ + "/User/Documents/RespLab/Data/" + ], + "ontology": "GENEPIO:0001478", + "type": "string", + "description": "The filepath of the r1 file.", + "classification": "Files info", + "label": "Filepath R1", + "fill_mode": "batch", + "header": "N" + }, + "sequence_file_path_R2": { + "examples": [ + "/User/Documents/RespLab/Data/" + ], + "ontology": "GENEPIO:0001479", + "type": "string", + "description": "The filepath of the r2 file.", + "classification": "Files info", + "label": "Filepath R2", + "fill_mode": "batch", + "header": "N" + }, + "batch_id": { + "examples": [ + "20250506140633" + ], + "ontology": "NCIT:C104504", + "type": "string", + "description": "Unique identifier for each analysis batch.", + "classification": "Sample collection and processing", + "label": "Batch identifier", + "fill_mode": "batch", + "header": "N" + }, + "file_format": { + "examples": [ + "BAM,CRAM,FASTQ" + ], + "ontology": "MS:1001459", + "enum": [ + "BAM [EDAM:2572]", + "CRAM [EDAM:3462]", + "FASTQ [EDAM:1930]", + "FASTA [EDAM:1929]", + "Not Provided [SNOMED:434941000124101]" + ], + "type": "string", + "description": "The run data file model.", + "classification": "Files info", + "label": "File format", + "fill_mode": "batch", + "header": "N" + }, + "sequencing_instrument_platform": { + "enum": [ + "Oxford Nanopore [OBI:0002750]", + "Illumina [OBI:0000759]", + "Ion Torrent [GENEPIO:0002683]", + "PacBio [GENEPIO:0001927]", + "BGI [GENEPIO:0004324]", + "MGI [GENEPIO:0004325]" + ], + "examples": [ + "Illumina" + ], + "ontology": "GENEPIO:0000071", + "type": "string", + "description": "A sequencing plaform (brand) is a name of a company that produces sequencer equipment.", + "classification": "Sequencing", + "label": "Sequencing Instrument Platform", + "fill_mode": "batch", + "header": "Y" + }, + "sequencing_instrument_model": { + "enum": [ + "Illumina sequencing instrument [GENEPIO:0100105]", + "Illumina Genome Analyzer [GENEPIO:0100106]", + "Illumina Genome Analyzer II [OBI:0000703]", + "Illumina Genome Analyzer IIx [OBI:0002000]", + "Illumina HiScanSQ [GENEPIO:0100109]", + "Illumina HiSeq [GENEPIO:0100110]", + "Illumina HiSeq X [GENEPIO:0100111]", + "Illumina HiSeq X Five [GENEPIO:0100112]", + "Illumina HiSeq X Ten [GENEPIO:0100113]", + "Illumina HiSeq 1000 [OBI:0002022]", + "Illumina HiSeq 1500 [GENEPIO:0100115]", + "Illumina HiSeq 2000 [OBI:0002001]", + "Illumina HiSeq 2500 [OBI:0002002]", + "Illumina HiSeq 3000 [OBI:0002048]", + "Illumina HiSeq 4000 [OBI:0002049]", + "Illumina iSeq [GENEPIO:0100120]", + "Illumina iSeq 100 [GENEPIO:0100121]", + "Illumina NovaSeq [GENEPIO:0100122]", + "Illumina NovaSeq 6000 [GENEPIO:0100123]", + "Illumina MiniSeq [GENEPIO:0100124]", + "Illumina MiSeq [OBI:0002003]", + "Illumina NextSeq [GENEPIO:0100126]", + "Illumina NextSeq 500 [OBI:0002021]", + "Illumina NextSeq 550 [GENEPIO:0100128]", + "Illumina NextSeq 1000 [OBI:0003606]", + "Illumina NextSeq 2000 [GENEPIO:0100129]", + "Illumina NextSeq 6000", + "Ion GeneStudio S5 Prime", + "Ion GeneStudio S5 Plus", + "Ion GeneStudio S5", + "Ion Torrent sequencing instrument [GENEPIO:0100135]", + "Ion Torrent Genexus", + "Ion Torrent PGM [GENEPIO:0100136]", + "Ion Torrent Proton [GENEPIO:0100137]", + "Ion Torrent S5 [GENEPIO:0100139]", + "Ion Torrent S5 XL [GENEPIO:0100138]", + "MinION [GENEPIO:0100142]", + "GridION [GENEPIO:0100141]", + "PromethION [GENEPIO:0100143]", + "Pacific Biosciences sequencing instrument [GENEPIO:0100130]", + "PacBio RS [GENEPIO:0100131]", + "PacBio RS II [OBI:0002012]", + "PacBio Sequel [GENEPIO:0100133]", + "PacBio Sequel II [GENEPIO:0100134]", + "Oxford Nanopore sequencing instrument [GENEPIO:0100140]", + "Oxford Nanopore GridION [GENEPIO:0100141]", + "Oxford Nanopore MinION [GENEPIO:0100142]", + "Oxford Nanopore PromethION [GENEPIO:0100143]", + "AB 310 Genetic Analyzer", + "AB 3130 Genetic Analyzer", + "AB 3130xL Genetic Analyzer", + "AB 3500 Genetic Analyzer", + "AB 3500xL Genetic Analyzer", + "AB 3730 Genetic Analyzer", + "AB 3730xL Genetic Analyzer", + "AB SOLID System [OBI:0000696]", + "AB SOLID System 2.0 [EFO:0004442]", + "AB SOLID System 3.0 [EFO:0004439]", + "AB SOLID 3 Plus System [OBI:0002007]", + "AB SOLID 4 System [EFO:0004438]", + "AB SOLID 4hq System [AB SOLID 4hq System]", + "AB SOLID PI System [EFO:0004437]", + "AB. 5500 Genetic Analyzer", + "AB 5500xl Genetic Analyzer", + "AB 5500xl-W Genetic Analysis System", + "BGI Genomics sequencing instrument [GENEPIO:0100144]", + "BGISEQ-500 [GENEPIO:0100145]", + "BGISEQ-50", + "DNBSEQ-T7 [GENEPIO:0100147]", + "DNBSEQ-G400 [GENEPIO:0100148]", + "DNBSEQ-G400 FAST [GENEPIO:0100149]", + "MGI sequencing instrument [GENEPIO:0100146]", + "MGISEQ-2000RS", + "MGI DNBSEQ-T7 [GENEPIO:0100147]", + "MGI DNBSEQ-G400 [GENEPIO:0100148]", + "MGI DNBSEQ-G400RS FAST [GENEPIO:0100149]", + "MGI DNBSEQ-G50 [GENEPIO:0100150]", + "454 GS [EFO:0004431]", + "454 GS 20 [EFO:0004206]", + "454 GS FLX + [EFO:0004432]", + "454 GS FLX Titanium [EFO:0004433]", + "454 GS FLX Junior [GENEPIO:0001938]", + "Not Applicable [SNOMED:385432009]", + "Not Collected [LOINC:LA4700-6]", + "Not Provided [SNOMED:434941000124101]", + "Missing [LOINC:LA14698-7]", + "Restricted Access [GENEPIO:0001810]" + ], + "examples": [ + "Illumina NextSeq 550" + ], + "ontology": "GENEPIO:0001452", + "type": "string", + "description": "The model of the sequencing instrument used.", + "classification": "Sequencing", + "label": "Sequencing Instrument Model", + "fill_mode": "batch", + "header": "Y" + }, + "read_length": { + "examples": [ + "75" + ], + "ontology": "NCIT:C153362", + "type": "integer", + "minimum": 0, + "maximum": 20000, + "description": "Number of base pairs per read", + "classification": "Sequencing", + "label": "Read length", + "fill_mode": "batch", + "header": "Y" + }, + "fragment_size": { + "examples": [ + "75" + ], + "ontology": "NCIT:C153362", + "type": "integer", + "description": "The number of nucleotides successfully ordered from each side of a nucleic acid fragment obtained after the completion of a sequencing process.", + "classification": "Sequencing", + "label": "Fragment size", + "fill_mode": "batch", + "header": "N" + }, + "submitting_institution_id": { + "enum": [ + "COD-2401", + "COD-2402", + "COD-2403", + "COD-2404", + "COD-2405", + "COD-2406", + "COD-2407", + "COD-2408", + "COD-2409", + "COD-2410", + "COD-2411", + "COD-2412", + "COD-2413", + "COD-2414", + "COD-2415", + "COD-2417", + "COD-2418", + "COD-2419", + "COD-2421", + "COD-2422", + "COD-2423", + "COD-2424", + "COD-2425", + "COD-2426", + "COD-2427", + "COD-2428", + "COD-2429", + "COD-2430", + "COD-2431", + "COD-2432", + "COD-2433", + "COD-2434", + "COD-2435", + "COD-2436", + "COD-2437", + "COD-2438", + "COD-2439", + "COD-2440", + "COD-2441", + "COD-2442", + "COD-2443", + "COD-2444", + "COD-2445", + "COD-2446", + "COD-2447", + "COD-2448", + "COD-2449", + "COD-2450", + "COD-2451", + "COD-2452", + "COD-2453", + "COD-2454", + "COD-2455", + "COD-2456", + "COD-2458", + "COD-2459", + "COD-2460" + ], + "examples": [ + "COD-1111-BU" + ], + "ontology": "NCIT:C81294", + "type": "string", + "description": "The Institution identifier that is submitting data or information.", + "classification": "Sample collection and processing", + "label": "Submitting Institution Identifier", + "fill_mode": "batch", + "header": "Y" + }, + "bioinformatics_analysis_date": { + "examples": [ + "2022-07-15 00:00:00" + ], + "ontology": "OBI:0002471", + "type": "string", + "format": "date", + "description": "The time of a sample analysis process YYYY-MM-DD", + "classification": "Bioinformatics and QC metrics fields", + "label": "processing_date", + "fill_mode": "batch", + "header": "Y" + }, + "dehosting_method_software_name": { + "enum": [ + "BMTagger", + "Kraken2", + "NCBI Human Read Scrubber", + "Centrifuge", + "bowtie2", + "DeconSeq", + "BWA-Mem", + "Custom host removal script" + ], + "examples": [ + "Kraken2" + ], + "ontology": "GENEPIO:0001459", + "type": "string", + "description": "The method used to remove host reads from the pathogen sequence.", + "classification": "Bioinformatic Analysis fields", + "label": "Dehosting Method", + "fill_mode": "batch", + "header": "Y" + }, + "dehosting_method_software_version": { + "examples": [ + "2.4.1" + ], + "ontology": "LOINC:LA20883-7", + "type": "string", + "description": "The method version used to remove host reads from the pathogen sequence.", + "classification": "Bioinformatic Analysis fields", + "label": "Dehosting Method Version", + "fill_mode": "batch", + "header": "Y" + }, + "reference_genome_accession": { + "examples": [ + "NC_045512.2" + ], + "ontology": "GENEPIO:0001485", + "type": "string", + "description": "A persistent, unique identifier of a genome database entry. If entering multiple entries, separate them with commas.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Reference genome accession", + "fill_mode": "batch", + "header": "Y" + }, + "bioinformatics_protocol_software_name": { + "enum": [ + "nf-core/viralrecon", + "IRMA", + "DRAGEN COVID Lineage", + "DRAGEN Targeted Microbial", + "Ion Torrent Suite", + "SeqCovid", + "DeepChek", + "Influenza virus NGS Analysis", + "INSaFLU", + "Artic pipeline", + "Custom pipeline/workflow" + ], + "examples": [ + "https://www.protocols.io/groups/cphln-sarscov2-sequencing-consortium/members" + ], + "ontology": "GENEPIO:0001489", + "type": "string", + "description": "The name of the bioinformatics protocol used.", + "classification": "Bioinformatic Analysis fields", + "label": "Bioinformatics protocol", + "fill_mode": "batch", + "header": "Y" + }, + "if_bioinformatic_protocol_is_other_specify": { + "examples": [ + "https://www.protocols.io/groups/cphln-sarscov2-sequencing-consortium/members" + ], + "ontology": "0", + "type": "string", + "description": "The name of the bioinformatics protocol used if other.", + "classification": "Bioinformatic Analysis fields", + "label": "If bioinformatics protocol Is Other, Specify", + "fill_mode": "batch", + "header": "N" + }, + "bioinformatics_protocol_software_version": { + "examples": [ + "https://www.protocols.io/groups/cphln-sarscov2-sequencing-consortium/members" + ], + "ontology": "LOINC:LA20883-7", + "type": "string", + "description": "The version number of the bioinformatics protocol used.", + "classification": "Bioinformatic Analysis fields", + "label": "Bioinformatics protocol version", + "fill_mode": "batch", + "header": "Y" + }, + "commercial_open_source_both": { + "enum": [ + "Commercial [SWO:1000002]", + "Open Source [SWO:1000008]", + "Both" + ], + "examples": [ + "Commercial" + ], + "ontology": "0", + "type": "string", + "description": "If bioinformatics protocol used was open-source or commercial", + "classification": "Bioinformatic Analysis fields", + "label": "Commercial/Open-source/both", + "fill_mode": "batch", + "header": "Y" + }, + "preprocessing_software_name": { + "enum": [ + "Torrent BaseCaller", + "Fastp", + "Trimmomatic", + "IRMA custom script", + "Ion Torrent Suite", + "BBduk", + "cutadapt", + "skewer", + "FASTX-Toolkit", + "NanoFilt", + "FiltLong", + "SOAPnuke", + "Trim Galore", + "Nanocorrect", + "PoreSeq", + "NaS", + "NanoPack", + "Porechop", + "Custom preprocessing script" + ], + "examples": [ + "Fastp" + ], + "ontology": "MS_1002386", + "type": "string", + "description": "Software used for preprocessing step.", + "classification": "Bioinformatic Analysis fields", + "label": "Preprocessing software", + "fill_mode": "batch", + "header": "Y" + }, + "preprocessing_software_version": { + "examples": [ + "v5.3.1" + ], + "ontology": "LOINC:LA20883-7", + "type": "string", + "description": "Version of the preprocessing software used.", + "classification": "Bioinformatic Analysis fields", + "label": "Preprocessing software version", + "fill_mode": "batch", + "header": "Y" + }, + "if_preprocessing_other": { + "examples": [ + "Seqtk" + ], + "ontology": "MS_1002386", + "type": "string", + "description": "Preprocessing software name if other", + "classification": "Bioinformatic Analysis fields", + "label": "If preprocessing Is Other, Specify", + "fill_mode": "batch", + "header": "N" + }, + "preprocessing_params": { + "examples": [ + "--cut_mean_quality 30" + ], + "ontology": "NCIT:C44175", + "type": "string", + "description": "The parameters and settings used to perform preprocessing analysis.", + "classification": "Bioinformatic Analysis fields", + "label": "Preprocessing params", + "fill_mode": "batch", + "header": "Y" + }, + "mapping_software_name": { + "enum": [ + "bwa mem", + "bwa align", + "minimap2", + "bowtie2", + "tmap", + "BLAT", + "BBmap", + "HISAT2", + "KMA", + "GraphMap", + "NGMLR", + "marginAlign", + "Custom mapping script" + ], + "examples": [ + "bowtie2" + ], + "ontology": "NCIT:C175896", + "type": "string", + "description": "Software used for mapping step.", + "classification": "Bioinformatic Analysis fields", + "label": "Mapping software", + "fill_mode": "batch", + "header": "Y" + }, + "mapping_software_version": { + "examples": [ + "v7.0.1" + ], + "ontology": "LOINC:LA20883-7", + "type": "string", + "description": "Version of the mapper used.", + "classification": "Bioinformatic Analysis fields", + "label": "Mapping software version", + "fill_mode": "batch", + "header": "Y" + }, + "if_mapping_other": { + "examples": [ + "Mosaik" + ], + "ontology": "0", + "type": "string", + "description": "Mapping software used if other", + "classification": "Bioinformatic Analysis fields", + "label": "If mapping Is Other, Specify", + "fill_mode": "batch", + "header": "N" + }, + "mapping_params": { + "examples": [ + "--seed 1" + ], + "ontology": "NCIT:C44175", + "type": "string", + "description": "Parameters used for mapping step.", + "classification": "Bioinformatic Analysis fields", + "label": "Mapping params", + "fill_mode": "batch", + "header": "Y" + }, + "assembly": { + "enum": [ + "LABEL", + "SPAdes", + "viralSPAdes", + "Unicycler", + "AssemblerSPAdes plugin", + "Velvet", + "Trinity", + "Megahit", + "Trans-ABySS", + "Canu", + "Miniasm", + "Vicuna", + "SAVAGE", + "PEHaplo", + "SOAPdenovo", + "Custom assembly script" + ], + "examples": [ + "SPAdes" + ], + "ontology": "GENEPIO:0000090", + "type": "string", + "description": "Software used for assembly of the pathogen genome.", + "classification": "Bioinformatic Analysis fields", + "label": "Assembly software", + "fill_mode": "batch", + "header": "Y" + }, + "assembly_version": { + "examples": [ + "v3.1" + ], + "ontology": "NCIT:C164455", + "type": "string", + "description": "Version of the software used for assembly of the pathogen genome.", + "classification": "Bioinformatic Analysis 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JSON", + "fill_mode": "batch", + "header": "N" + }, + "vcf_filename": { + "examples": [ + "sample_name.vcf" + ], + "ontology": "0", + "type": "string", + "description": "Name of the vcf file. If entering multiple entries, separate them with commas.", + "classification": "Bioinformatic Variants", + "label": "VCF filename", + "fill_mode": "batch", + "header": "Y" + }, + "variant_calling_software_name": { + "enum": [ + "Ivar", + "bcftools", + "lofreq", + "Medaka", + "Clair3", + "Torrent VariantCaller plugin", + "IRMA custom VariantCaller", + "DRAGEN VariantCaller", + "Nanopolish", + "freebayes", + "Custom variant calling script" + ], + "examples": [ + "Ivar" + ], + "ontology": "EDAM:operation_3227", + "type": "string", + "description": "Software used for variant calling.", + "classification": "Bioinformatic Variants", + "label": "Variant calling software", + "fill_mode": "batch", + "header": "Y" + }, + "variant_calling_software_version": { + "examples": [ + "v4.1" + ], + "ontology": "LOINC:LA20883-7", + "type": "string", + "description": "Version of the variant calling software used to generate the VCF", + "classification": "Bioinformatic Variants", + "label": "Variant calling software version", + "fill_mode": "batch", + "header": "Y" + }, + "if_variant_calling_other": { + "examples": [ + "GATK HaplotypeCaller" + ], + "ontology": "0", + "type": "string", + "description": "Specify if you have used another variant calling software", + "classification": "Bioinformatic Variants", + "label": "If variant calling Is Other, Specify", + "fill_mode": "batch", + "header": "N" + }, + "variant_calling_params": { + "examples": [ + "-t 0.5 -Q 20" + ], + "ontology": "NCIT:C44175", + "type": "string", + "description": "Params used for variant calling", + "classification": "Bioinformatic Variants", + "label": "Variant calling params", + "fill_mode": "batch", + "header": "Y" + }, + "consensus_sequence_name": { + "examples": [ + "2018086 NC_045512.2" + ], + "ontology": "GENEPIO:0001460", + "type": "string", + "description": "The name of the consensus sequence. If entering multiple entries, separate them with commas.", + "classification": "Bioinformatic Analysis fields", + "label": "Consensus sequence name", + "fill_mode": "batch", + "header": "Y" + }, + "consensus_sequence_filename": { + "examples": [ + "2018102.consensus.fa" + ], + "ontology": "GENEPIO:0001461", + "type": "string", + "description": "Filename (including extension) of the consensus/assembled genome FASTA submitted for this sample. SARS-CoV-2: submit one FASTA file containing a single consensus sequence. Influenza: submit one FASTA file per sample containing all segments as a multi-FASTA (one record per segment).", + "classification": "Bioinformatic Analysis fields", + "label": "Consensus sequence filename", + "fill_mode": "batch", + "header": "Y" + }, + "consensus_sequence_md5": { + "examples": [ + "5gaskañlkdak3143242ñlkas" + ], + "ontology": "0", + "type": "string", + "description": "The md5 of the consensus sequence.", + "classification": "Bioinformatic Analysis fields", + "label": "Consensus sequence name md5", + "fill_mode": "batch", + "header": "Y" + }, + "consensus_sequence_filepath": { + "examples": [ + "/User/Documents/RespLab/Data/ncov123assembly.fasta" + ], + "ontology": "GENEPIO:0001462", + "type": "string", + "description": "The filepath of the consensus sequence file.", + "classification": "Bioinformatic Analysis fields", + "label": "Consensus sequence filepath", + "fill_mode": "batch", + "header": "N" + }, + "long_table_path": { + "examples": [ + "/User/Documents/RespLab/ncov123_longtable.tsv" + ], + "ontology": "0", + "type": "string", + "description": "The path where the long table including all variants and annotations is.", + "classification": "Bioinformatic Analysis fields", + "label": "Long table path", + "fill_mode": "batch", + "header": "N" + }, + "consensus_sequence_software_name": { + "enum": [ + "Ivar consensus", + "bcftools consensus", + "Torrent Generateconsensus plugin", + "samtools consensus", + "Medaka consensus", + "IRMA consensus", + "DRAGEN consensus", + "Custom consensus script" + ], + "examples": [ + "Ivar" + ], + "ontology": "GENEPIO:0001463", + "type": "string", + "description": "The name of software used to generate the consensus sequence.", + "classification": "Bioinformatic Analysis fields", + "label": "Consensus software", + "fill_mode": "batch", + "header": "Y" + }, + "if_consensus_other": { + "examples": [ + "Ivar" + ], + "ontology": "0", + "type": "string", + "description": "Specify if you have used another consensus software", + "classification": "Bioinformatic Analysis fields", + "label": "If consensus Is Other, Specify", + "fill_mode": "batch", + "header": "N" + }, + "consensus_sequence_software_version": { + "examples": [ + "1.3" + ], + "ontology": "GENEPIO:0001469", + "type": "string", + "description": "The version of the software used to generate the consensus sequence.", + "classification": "Bioinformatic Analysis fields", + "label": "Consensus software version", + "fill_mode": "batch", + "header": "Y" + }, + "consensus_params": { + "examples": [ + "AF > 0.75" + ], + "ontology": "NCIT:C44175", + "type": "string", + "description": "Parameters used for consensus generation", + "classification": "Bioinformatic Analysis fields", + "label": "Consensus params", + "fill_mode": "batch", + "header": "Y" + }, + "consensus_genome_length": { + "examples": [ + "38677" + ], + "ontology": "GENEPIO:0001483", + "type": "string", + "description": "Size of the assembled genome described as the number of base pairs. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatics and QC metrics fields", + "label": "Consensus genome length", + "fill_mode": "batch", + "header": "Y" + }, + "depth_of_coverage_threshold": { + "examples": [ + "10x" + ], + "ontology": "GENEPIO:0001475", + "type": "string", + "description": "The threshold used as a cut-off for the depth of coverage.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Depth of coverage threshold", + "fill_mode": "batch", + "header": "Y" + }, + "number_of_reads_sequenced": { + "examples": [ + "387566" + ], + "ontology": "NCIT:C164667", + "type": "integer", + "minimum": 0, + "maximum": 50000000, + "description": "The number of total reads generated by the sequencing process.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Number of reads sequenced", + "fill_mode": "batch", + "header": "Y" + }, + "pass_reads": { + "examples": [ + "153812" + ], + "ontology": "GENEPIO:0000087", + "type": "integer", + "minimum": 0, + "maximum": 50000000, + "description": "Number of reads that pass quality control threshold", + "classification": "Bioinformatics and QC metrics fields", + "label": "Number of reads passing filters", + "fill_mode": "batch", + "header": "Y" + }, + "per_reads_host": { + "examples": [ + "0.19" + ], + "ontology": "NCIT:C185251", + "type": "number", + "minimum": 0, + "maximum": 100, + "description": "Percentage of reads mapped to host", + "classification": "Bioinformatics and QC metrics fields", + "label": "%Reads host", + "fill_mode": "batch", + "header": "Y" + }, + "per_reads_virus": { + "examples": [ + "99.69" + ], + "ontology": "NCIT:C185251", + "type": "number", + "minimum": 0, + "maximum": 100, + "description": "Percentage of reads mapped to virus. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatics and QC metrics fields", + "label": "%Reads virus", + "fill_mode": "batch", + "header": "Y" + }, + "per_unmapped": { + "examples": [ + "0.13" + ], + "ontology": "0", + "type": "number", + "maximum": 100, + "description": "Percentage of reads unmapped to virus or to host", + "classification": "Bioinformatics and QC metrics fields", + "label": "%Unmapped", + "fill_mode": "batch", + "header": "Y" + }, + "depth_of_coverage_value": { + "examples": [ + "400" + ], + "ontology": "GENEPIO:0001474", + "type": "integer", + "minimum": 0, + "maximum": 1000000, + "description": "The average number of reads representing each nucleotide in the reconstructed sequence. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatics and QC metrics fields", + "label": "Depth of coverage Mean value", + "fill_mode": "batch", + "header": "Y" + }, + "per_genome_greater_10x": { + "examples": [ + "96" + ], + "ontology": "0", + "type": "number", + "minimum": 0, + "maximum": 100, + "description": "Percentage of genome with coverage greater than 10x. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatics and QC metrics fields", + "label": "% Genome > 10x", + "fill_mode": "batch", + "header": "Y" + }, + "per_Ns": { + "examples": [ + "3" + ], + "ontology": "0", + "type": "number", + "minimum": 0, + "maximum": 100, + "description": "Percentage of Ns. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatics and QC metrics fields", + "label": "%Ns", + "fill_mode": "batch", + "header": "Y" + }, + "number_of_Ns": { + "examples": [ + "2000" + ], + "ontology": "0", + "type": "integer", + "minimum": 0, + "maximum": 100000, + "description": "Total count of undetermined bases ('N') in the final consensus sequence. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatics and QC metrics fields", + "label": "Number of Ns", + "fill_mode": "batch", + "header": "Y" + }, + "ns_per_100_kbp": { + "examples": [ + "300" + ], + "ontology": "GENEPIO:0001484", + "type": "number", + "minimum": 0, + "maximum": 100000, + "description": "The number of N symbols present in the consensus fasta sequence, per 100kbp of sequence. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatics and QC metrics fields", + "label": "Ns per 100 kbp", + "fill_mode": "batch", + "header": "Y" + }, + "number_of_variants_in_consensus": { + "examples": [ + "130" + ], + "ontology": "NCIT:C181350", + "type": "integer", + "minimum": 0, + "maximum": 10000, + "description": "The number of variants found in consensus sequence. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatic Variants", + "label": "Number of variants (AF > 75%)", + "fill_mode": "batch", + "header": "Y" + }, + "number_of_variants_with_effect": { + "examples": [ + "93" + ], + "ontology": "NCIT:C181350", + "type": "integer", + "minimum": 0, + "maximum": 10000, + "description": "The number of missense variants. For fragmented genome viruses, all segments that make up the complete genome must be taken into account (.i.e. influenza; HA segment, NA segment, ...)", + "classification": "Bioinformatic Variants", + "label": "Number of variants with effect", + "fill_mode": "batch", + "header": "Y" + }, + "number_of_sgene_frameshifts": { + "examples": [ + "0" + ], + "ontology": "GENEPIO:0001457", + "type": "integer", + "minimum": 0, + "maximum": 1000, + "description": "Number of frameshift events detected within the SARS-CoV-2 Spike (S) gene region in the consensus", + "classification": "Bioinformatics and QC metrics fields", + "label": "Number of frameshifts in Sgene", + "fill_mode": "batch", + "header": "Y" + }, + "number_of_unambiguous_bases": { + "examples": [ + "29000" + ], + "ontology": "GENEPIO:0001457", + "type": "integer", + "minimum": 0, + "maximum": 30000, + "description": "Total count of non-ambiguous bases (A/C/G/T) in the final consensus sequence", + "classification": "Bioinformatics and QC metrics fields", + "label": "Number of unambiguous bases", + "fill_mode": "batch", + "header": "Y" + }, + "per_ldmutations": { + "examples": [ + "98" + ], + "ontology": "GENEPIO:0001457", + "type": "number", + "minimum": 0, + "maximum": 100, + "description": "Percentage of SARS-CoV-2 lineage-defining mutations (per assigned lineage) that are present in the sample.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Percentage of Lineage Defining Mutations", + "fill_mode": "batch", + "header": "Y" + }, + "per_sgene_ambiguous": { + "examples": [ + "0" + ], + "ontology": "GENEPIO:0001457", + "type": "number", + "minimum": 0, + "maximum": 100, + "description": "Percentage of ambiguous bases ('N') within the SARS-CoV-2 Spike (S) gene region", + "classification": "Bioinformatics and QC metrics fields", + "label": "Percentage of sSgene ambiguous bases", + "fill_mode": "batch", + "header": "Y" + }, + "per_sgene_coverage": { + "examples": [ + "99" + ], + "ontology": "GENEPIO:0001457", + "type": "number", + "minimum": 0, + "maximum": 100, + "description": "Percentage (%) of positions within the SARS-CoV-2 Spike (S) gene that meet the pipeline's coverage threshold.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Percentage of Sgene coverage", + "fill_mode": "batch", + "header": "Y" + }, + "qc_test": { + "enum": [ + "Pass", + "Fail" + ], + "examples": [ + "Pass" + ], + "ontology": "GENEPIO:0001457", + "type": "string", + "description": "Overall quality control outcome/determination for the sequence or analysis. If possible, align values to PHA4GE “quality control determination” terms for interoperability.", + "classification": "Bioinformatics and QC metrics fields", + "label": "Quality control evaluation", + "fill_mode": "batch", + "header": "Y" + }, + "variant_name": { + "examples": [ + "alpha" + ], + "ontology": "GENEPIO:0001498", + "type": "string", + "description": "The variant classification of the SARS-CoV-2 lineage i.e. alpha, beta, etc.", + "classification": "Genomic Typing fields", + "label": "Variant Name", + "fill_mode": "batch", + "header": "Y" + }, + "variant_designation": { + "enum": [ + "Variant of Interest (VOI) [GENEPIO:0100083]", + "Variant of Concern (VOC) [GENEPIO:0100082]", + "Variant Under Monitoring (VUM) [GENEPIO:0100279]" + ], + "examples": [ + "Variant of Concern (VOC) [GENEPIO:0100083]" + ], + "ontology": "GENEPIO:0001503", + "type": "string", + "description": "The variant classification of the SARS-CoV-2 lineage i.e. variant, variant of concern.", + "classification": "Genomic Typing fields", + "label": "Variant designation", + "fill_mode": "batch", + "header": "Y" + }, + "clade_assignment": { + "examples": [ + "B.1.1.7" + ], + "ontology": "NCIT:C179767", + "type": "string", + "description": "An indication of the taxonomic clade grouping of organisms. Examples: SARS-CoV-2 (Nextclade) e.g., 24E; Influenza (HA clade) e.g., C.5.1.", + "classification": "Genomic Typing fields", + "label": "Clade Assignment", + "fill_mode": "batch", + "header": "Y" + }, + "clade_assignment_software_name": { + "enum": [ + "Nextclade", + "USHER", + "Custom clade assignment script" + ], + "examples": [ + "Nextclade" + ], + "ontology": "GENEPIO:0001501", + "type": "string", + "description": "The name of the software used to determine the clade.", + "classification": "Genomic Typing fields", + "label": "Clade Assignment Software Name", + "fill_mode": "batch", + "header": "Y" + }, + "if_clade_assignment_other": { + "examples": [ + "Custom Pipeline" + ], + "ontology": "0", + "type": "string", + "description": "Other software used to determine clade.", + "classification": "Genomic Typing fields", + "label": "Other Clade Assignment Software", + "fill_mode": "batch", + "header": "N" + }, + "clade_assignment_software_version": { + "examples": [ + "3.1.2" + ], + "ontology": "GENEPIO:0001502", + "type": "string", + "description": "The version of the software used to determine the clade.", + "classification": "Genomic Typing fields", + "label": "Clade Assignment Software Version", + "fill_mode": "batch", + "header": "Y" + }, + "clade_assignment_software_database_version": { + "examples": [ + "1.2.1" + ], + "ontology": "MS:1001016", + "type": "string", + "description": "Version of the search database to determine the clade. (https://github.com/nextstrain/nextclade_data/releases)", + "classification": "Genomic Typing fields", + "label": "Clade Assignment Software Database Version", + "fill_mode": "batch", + "header": "Y" + }, + "clade_assignment_date": { + "examples": [ + "20241204" + ], + "ontology": "LOINC:40783184", + "type": "string", + "format": "date", + "description": "Date when the clade analysis was performed via Nextclade", + "classification": "Genomic Typing fields", + "label": "Clade Assignment Date", + "fill_mode": "batch", + "header": "Y" + }, + "lineage_assignment": { + "examples": [ + "KP.3.1.1" + ], + "ontology": "NCIT:C179767", + "type": "string", + "description": "An indication of the SARS-CoV-2 taxonomic lineage grouping of organisms.", + "classification": "Genomic Typing fields", + "label": "Lineage Assignment", + "fill_mode": "batch", + "header": "Y" + }, + "lineage_assignment_software_name": { + "enum": [ + "Pangolin", + "Nextclade", + "USHER", + "Custom lineage assignment script" + ], + "examples": [ + "Pangolin" + ], + "ontology": "GENEPIO:0001501", + "type": "string", + "description": "The name of the software used to determine the SARS-CoV-2 lineage.", + "classification": "Genomic Typing fields", + "label": "Lineage Assignment Software Name", + "fill_mode": "batch", + "header": "Y" + }, + "if_lineage_assignment_other": { + "examples": [ + "Custom Pipeline" + ], + "ontology": "0", + "type": "string", + "description": "Other software used to determine SARS-CoV-2 lineage.", + "classification": "Genomic Typing fields", + "label": "Other Lineage Assignment Software", + "fill_mode": "batch", + "header": "N" + }, + "lineage_assignment_software_version": { + "examples": [ + "2.2.1" + ], + "ontology": "GENEPIO:0001502", + "type": "string", + "description": "The version of the software used to determine the SARS-CoV-2 lineage.", + "classification": "Genomic Typing fields", + "label": "Lineage Assignment Software Version", + "fill_mode": "batch", + "header": "Y" + }, + "lineage_algorithm_software_version": { + "examples": [ + "PUSHER-v1.28" + ], + "ontology": "0", + "type": "string", + "description": "Version of the algorithm used by the SARS-CoV-2 lineage assignment software", + "classification": "Genomic Typing fields", + "label": "Lineage Algorithm Software Version", + "fill_mode": "batch", + "header": "Y" + }, + "lineage_assignment_scorpio_version": { + "examples": [ + "1.1.3" + ], + "ontology": "NCIT:C111093", + "type": "string", + "description": "The version of the scorpio data used to determine the SARS-CoV-2 lineage.", + "classification": "Genomic Typing fields", + "label": "Lineage Assignment Scorpio Version", + "fill_mode": "batch", + "header": "Y" + }, + "lineage_assignment_constellation_version": { + "examples": [ + "3.1.1" + ], + "ontology": "NCIT:C111093", + "type": "string", + "description": "The version of the constellations databases used to determine the SARS-CoV-2 lineage.", + "classification": "Genomic Typing fields", + "label": "Lineage Assignment Constellation Version", + "fill_mode": "batch", + "header": "Y" + }, + "lineage_assignment_date": { + "examples": [ + "20241204" + ], + "ontology": "LOINC:40783184", + "type": "string", + "format": "date", + "description": "Date when the SARS-CoV-2 lineage analysis was performed", + "classification": "Genomic Typing fields", + "label": "Lineage Assignment Date", + "fill_mode": "batch", + "header": "Y" + }, + "lineage_assignment_file": { + "examples": [ + "lineage_analysis_results.csv" + ], + "ontology": "0", + "type": "string", + "description": "File containing results from SARS-CoV-2 lineage analysis", + "classification": "Genomic Typing fields", + "label": "Lineage Assignment File", + "fill_mode": "batch", + "header": "Y" + }, + "lineage_assignment_database_version": { + "examples": [ + "2.26.0" + ], + "ontology": "0", + "type": "string", + "description": "Version of the lineage assignment database. Fill in only for SARS-CoV-2. For Influenza, enter “0” (zero) since this field is mandatory. (https://github.com/cov-lineages/pangolin-data/releases)", + "classification": "Genomic Typing fields", + "label": "Pangolin Database Version", + "fill_mode": "batch", + "header": "Y" + }, + "type_assignment": { + "examples": [ + "B" + ], + "ontology": "NCIT:C179767", + "type": "string", + "description": "An indication of the taxonomic grouping of organisms. Examples: Influenza e.g., A/B/C ; RSV e.g., RSV-A|RSV-B.", + "classification": "Genomic Typing fields", + "label": "Type Assignment", + "fill_mode": "batch", + "header": "Y" + }, + "type_assignment_software_name": { + "enum": [ + "IRMA typing", + "INSaFLU", + "Custom typing script" + ], + "examples": [ + "INSaFLU" + ], + "ontology": "GENEPIO:0001501", + "type": "string", + "description": "The name of the software used to determine the type.", + "classification": "Genomic Typing fields", + "label": "Type Assignment Software Name", + "fill_mode": "batch", + "header": "Y" + }, + "if_type_assignment_software_other": { + "examples": [ + "Manual curation" + ], + "ontology": "0", + "type": "string", + "description": "Other software iused to determine Type.", + "classification": "Genomic Typing fields", + "label": "Other Type Assignment Software", + "fill_mode": "batch", + "header": "N" + }, + "type_assignment_software_version": { + "examples": [ + "2.0.1" + ], + "ontology": "GENEPIO:0001502", + "type": "string", + "description": "The version of the software used to determine thetype.", + "classification": "Genomic Typing fields", + "label": "Type Assignment Software Version", + "fill_mode": "batch", + "header": "Y" + }, + "type_assignment_software_database_version": { + "examples": [ + "1.5.2" + ], + "ontology": "MS:1001016", + "type": "string", + "description": "Version of the search database.", + "classification": "Genomic Typing fields", + "label": "Type Assignment Software Database Version", + "fill_mode": "batch", + "header": "Y" + }, + "subtype_assignment": { + "examples": [ + "H1N1" + ], + "ontology": "NCIT:C179767", + "type": "string", + "description": "An indication of the taxonomic grouping of organisms.", + "classification": "Genomic Typing fields", + "label": "Subtype Assignment", + "fill_mode": "batch", + "header": "Y" + }, + "subtype_assignment_software_name": { + "enum": [ + "IRMA subtyping", + "INSaFLU", + "Custom subtyping script" + ], + "examples": [ + "INSaFLU" + ], + "ontology": "GENEPIO:0001501", + "type": "string", + "description": "The name of the software used to determine the subtype.", + "classification": "Genomic Typing fields", + "label": "Subtype Assignment Software Name", + "fill_mode": "batch", + "header": "Y" + }, + "if_subtype_assignment_software_other": { + "examples": [ + "Custom Pipeline" + ], + "ontology": "0", + "type": "string", + "description": "Other software used to determine Subtype.", + "classification": "Genomic Typing fields", + "label": "Other Subtype Assignment Software", + "fill_mode": "batch", + "header": "N" + }, + "subtype_assignment_software_version": { + "examples": [ + "3.2.2" + ], + "ontology": "GENEPIO:0001502", + "type": "string", + "description": "The version of the software used to determine the subtype.", + "classification": "Genomic Typing fields", + "label": "Subtype Assignment Software Version", + "fill_mode": "batch", + "header": "Y" + }, + "subtype_assignment_software_database_version": { + "examples": [ + "3.1.3" + ], + "ontology": "MS:1001016", + "type": "string", + "description": "Version of the search database.", + "classification": "Genomic Typing fields", + "label": "Subtype Assignment Software Database Version", + "fill_mode": "batch", + "header": "Y" + } + }, + "required": [ + "organism", + "collecting_lab_sample_id", + "enrichment_panel", + "sequencing_instrument_platform", + "submitting_institution_id", + "clade_assignment_software_database_version", + "lineage_assignment_database_version", + "type_assignment_software_database_version", + "subtype_assignment_software_database_version" + ] +} From 159f50e0ec38ca609fcaae917821b091eee51035 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:29:17 +0100 Subject: [PATCH 03/15] Remove configurations from configuration.json --- relecov_tools/conf/configuration.json | 1 + 1 file changed, 1 insertion(+) diff --git a/relecov_tools/conf/configuration.json b/relecov_tools/conf/configuration.json index 23090e9a6..c82f42ce3 100644 --- a/relecov_tools/conf/configuration.json +++ b/relecov_tools/conf/configuration.json @@ -88,6 +88,7 @@ "required_copy_from_other_field" ], "schema_file": "relecov_schema.json", + "cast_values_from_schema": false, "unique_sample_id": "sequencing_sample_id", "fixed_fields": { "study_type": "Whole Genome Sequencing", From debf9cf0c297d0a70d809daf8e0d61a5d4ceb4f7 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:45:18 +0100 Subject: [PATCH 04/15] Fix build_schema to new initial config --- relecov_tools/build_schema.py | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/relecov_tools/build_schema.py b/relecov_tools/build_schema.py index 06ec53dc3..7481ef97f 100644 --- a/relecov_tools/build_schema.py +++ b/relecov_tools/build_schema.py @@ -532,6 +532,14 @@ def handle_properties(self, json_data: dict[str, dict]) -> tuple[dict, dict, dic for property_id, db_features_dic in json_data.items(): is_required = db_features_dic.get("required (Y/N)", "") == "Y" has_enum = db_features_dic.get("enum", False) + if property_id in [ + "collecting_institution", + "submitting_institution", + "sequencing_institution", + ]: + lab_values = self._lab_uniques.get(property_id, []) + if lab_values: + has_enum = "; ".join(lab_values) # Create empty placeholder schema_property[property_id] = {} From 11f9fc75ab792784057f0fb1fa15fd85442ddd20 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:45:39 +0100 Subject: [PATCH 05/15] Update download to new extra config --- relecov_tools/download.py | 32 +++++++++++++++++++++++++++++--- 1 file changed, 29 insertions(+), 3 deletions(-) diff --git a/relecov_tools/download.py b/relecov_tools/download.py index 24f81f300..4ff65e500 100755 --- a/relecov_tools/download.py +++ b/relecov_tools/download.py @@ -126,6 +126,22 @@ def __init__( self.metadata_lab_heading = config_json.get_topic_data( "read_lab_metadata", "metadata_lab_heading" ) + if not self.metadata_lab_heading: + heading_file = config_json.get_topic_data( + "read_lab_metadata", "metadata_lab_heading_file" + ) + if heading_file: + if not os.path.isabs(heading_file): + heading_file = os.path.join( + os.path.dirname(os.path.realpath(__file__)), "conf", heading_file + ) + self.metadata_lab_heading = relecov_tools.utils.read_json_file( + heading_file + ) + else: + raise KeyError( + "Missing read_lab_metadata.metadata_lab_heading (or metadata_lab_heading_file) in configuration" + ) self.metadata_processing = config_json.get_topic_data( "sftp_handle", "metadata_processing" ) @@ -488,8 +504,15 @@ def set_nones_to_str(row, req_vals): return False sample_file_dict = {} metadata_ws, meta_header, header_row = self.read_metadata_file(meta_f_path) - # TODO Include these columns in config - index_sampleID = meta_header.index("Sample ID given for sequencing") + sample_id_col = self.metadata_processing.get( + "sample_id_col", "Sample ID given for sequencing" + ) + try: + index_sampleID = meta_header.index(sample_id_col) + except ValueError: + raise MetadataError( + f"Configured sample_id_col '{sample_id_col}' not found in metadata header" + ) index_layout = meta_header.index("Library Layout") index_fastq_r1 = meta_header.index("Sequence file R1") index_fastq_r2 = meta_header.index("Sequence file R2") @@ -512,7 +535,10 @@ def set_nones_to_str(row, req_vals): ): s_name = s_name + "_remove_" + str(counter) else: - log_text = "Found more samples with the same Sample ID given for sequencing. Only the first one remains." + log_text = ( + f"Found more samples with the same {sample_id_col}. " + "Only the first one remains." + ) stderr.print(log_text) self.include_warning(log_text, sample=s_name) continue From db27cfcd87f8004c05eb16f217c075a52b9e629e Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:46:45 +0100 Subject: [PATCH 06/15] Fix sftp modulo to match new extra config configuration --- relecov_tools/sftp_client.py | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/relecov_tools/sftp_client.py b/relecov_tools/sftp_client.py index e6faedcbf..9d8941623 100644 --- a/relecov_tools/sftp_client.py +++ b/relecov_tools/sftp_client.py @@ -54,6 +54,15 @@ def __init__(self, conf_file=None, username=None, password=None): "[red] Could not find the key " + e + "in config file " + conf_file ) sys.exit(1) + if self.sftp_port in (None, ""): + self.sftp_port = 22 + try: + self.sftp_port = int(self.sftp_port) + except (TypeError, ValueError): + log.warning( + "Could not parse sftp_port '%s'. Falling back to 22.", self.sftp_port + ) + self.sftp_port = 22 self.user_name = username self.password = password self.client = paramiko.SSHClient() @@ -85,6 +94,13 @@ def retrier(self, *args, **kwargs): def open_connection(self): """Establishing sftp connection""" log.info("Setting credentials for SFTP connection with remote server") + if not self.sftp_server: + msg = ( + "SFTP server not configured. Missing sftp_handle.sftp_connection.sftp_server " + "(or legacy sftp_handle.sftp_server)." + ) + log.error(msg) + raise ValueError(msg) self.client.connect( hostname=self.sftp_server, port=self.sftp_port, From 2edb67cefdaf6284a5fa90c4d3ad0076c73f2ec8 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:47:09 +0100 Subject: [PATCH 07/15] Fix validate to match new diferent extra configs / initial configs --- relecov_tools/validate.py | 31 ++++++++++++++++++++++++------- 1 file changed, 24 insertions(+), 7 deletions(-) diff --git a/relecov_tools/validate.py b/relecov_tools/validate.py index 5dc1b386b..5e4e5a1e5 100755 --- a/relecov_tools/validate.py +++ b/relecov_tools/validate.py @@ -419,7 +419,10 @@ def create_invalid_metadata(self, invalid_json, metadata, out_folder): collecting_lab_sample_id are removed from excel """ if self.sample_id_field is None: - log_text = f"Invalid excel file won't be created: {self.SAMPLE_FIELD_ERROR}" + log_text = ( + "Invalid excel file won't be created: sample_id_field could not be " + "resolved from schema ontology" + ) self.logsum.add_error(entry=log_text) return self.log.info("Trying to create invalid metadata excel file...") @@ -441,7 +444,9 @@ def create_invalid_metadata(self, invalid_json, metadata, out_folder): stderr.print("Start preparation of invalid samples...") self.log.info("Start preparation of invalid samples") for row in invalid_json: - sample_list.append(str(row[self.sample_id_field])) + sid = row.get(self.sample_id_field) + if sid is not None: + sample_list.append(str(sid)) wb = openpyxl.load_workbook(metadata) try: ws_sheet = wb[self.excel_sheet] @@ -449,12 +454,22 @@ def create_invalid_metadata(self, invalid_json, metadata, out_folder): logtxt = f"No sheet named {self.excel_sheet} could be found in {metadata}" self.log.error(logtxt) raise - tag = "Sample ID given for sequencing" + tag = ( + self.json_schema.get("properties", {}) + .get(self.sample_id_field, {}) + .get("label", "Sample ID given for sequencing") + ) # Check if mandatory colum ($tag) is defined in metadata. try: - header_row = [idx + 1 for idx, x in enumerate(ws_sheet.values) if tag in x][ - 0 - ] + header_row = [ + idx + 1 + for idx, x in enumerate(ws_sheet.values) + if any( + isinstance(v, str) and v.strip() == tag + for v in x + if v is not None + ) + ][0] except IndexError: self.log.error( f"Column with tag '{tag}' not found in any row of the Excel sheet." @@ -467,7 +482,9 @@ def create_invalid_metadata(self, invalid_json, metadata, out_folder): ) consec_empty_rows = 0 id_col = [ - idx for idx, val in enumerate(ws_sheet[header_row]) if val.value == tag + idx + for idx, val in enumerate(ws_sheet[header_row]) + if isinstance(val.value, str) and val.value.strip() == tag ][0] for row in row_iterator: # if no data in 10 consecutive rows, break loop From 21a5ef63529bc9bff05fb8dfbcd71ecf7328eb31 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:47:38 +0100 Subject: [PATCH 08/15] Fix read-lab-meatadata to new project bases extra config --- relecov_tools/read_lab_metadata.py | 121 +++++++++++++++++++++-------- 1 file changed, 87 insertions(+), 34 deletions(-) diff --git a/relecov_tools/read_lab_metadata.py b/relecov_tools/read_lab_metadata.py index 9a283f7d9..4cf154414 100755 --- a/relecov_tools/read_lab_metadata.py +++ b/relecov_tools/read_lab_metadata.py @@ -67,15 +67,28 @@ def __init__( ) raise FileNotFoundError(f"Metadata file {self.metadata_file} not found") + self.config_json = ConfigJson(extra_config=True) + self.configuration = self.config_json + self.institution_config = self.config_json.get_configuration( + "institutions_config" + ) + + self.readmeta_config = ( + self.configuration.get_configuration("read_lab_metadata") or {} + ) + default_project = self.readmeta_config.get("default_project") or "relecov" + self.project = (project or default_project).lower() + self.project_config = self._load_project_config( + self.readmeta_config, self.project, default_project + ) + if sample_list_file is None: stderr.print("[yellow]No samples_data.json file provided") self.log.warning("No samples_data.json file provided") if not os.path.isdir(str(files_folder)): stderr.print("[red]No samples file nor valid files folder provided") self.log.error("No samples file nor valid files folder provided") - raise FileNotFoundError( - "No samples file nor valid files folder provided" - ) + raise FileNotFoundError("No samples file nor valid files folder provided") self.files_folder = os.path.abspath(files_folder) if sample_list_file is not None and not os.path.exists(sample_list_file): @@ -167,9 +180,18 @@ def __init__( self.samples_json_fields = self.config_json.get_topic_data( "read_lab_metadata", "samples_json_fields" ) + cast_from_project = self.project_config.get("cast_values_from_schema") + if cast_from_project is None: + cast_from_project = self.config_json.get_topic_data( + "read_lab_metadata", "cast_values_from_schema" + ) + self.cast_values_from_schema = bool(cast_from_project) self.unique_sample_id = self.project_config.get( "unique_sample_id", "sequencing_sample_id" ) + self.sample_data_map_field = self.project_config.get("sample_data_map_field") + if not self.sample_data_map_field: + self.sample_data_map_field = self.unique_sample_id self.alt_heading_equivalences = ( self.project_config.get("alt_heading_equivalences", {}) or {} ) @@ -359,14 +381,21 @@ def safely_calculate_md5(file): n = 0 for sample in clean_metadata_rows: n += 1 - sample_id = str(sample.get(self.unique_sample_id)) - if not sample_id: - if sample.get("collecting_lab_sample_id"): - sample_id = sample["collecting_lab_sample_id"] - self.unique_sample_id = "collecting_lab_sample_id" - else: - sample_id = sample.get("sequence_file_R1", "").split(".")[0] - self.unique_sample_id = "sequence_file_R1" + id_field = self.sample_data_map_field or self.unique_sample_id + sample_id = sample.get(id_field) + sample_id_str = str(sample_id).strip() + if sample_id in (None, "") or sample_id_str.lower() in {"none", "nan"}: + sample_id = sample.get("collecting_lab_sample_id") + sample_id_str = str(sample_id).strip() + if sample_id in (None, "") or sample_id_str.lower() in {"none", "nan"}: + sample_id = sample.get("sequencing_sample_id") + sample_id_str = str(sample_id).strip() + if sample_id in (None, "") or sample_id_str.lower() in {"none", "nan"}: + sample_id = sample.get("sequence_file_R1", "").split(".")[0] + sample_id_str = str(sample_id).strip() + if not sample_id_str or sample_id_str.lower() in {"none", "nan"}: + sample_id_str = f"sample_{n}" + sample_id = sample_id_str files_dict = {} r1_file = sample.get("sequence_file_R1") r2_file = sample.get("sequence_file_R2") @@ -528,20 +557,32 @@ def adding_ontology_to_enum(self, m_data): enum_dict = {} for prop, values in self.relecov_sch_json["properties"].items(): enum_values = values.get("enum", []) + if not enum_values: + ref = values.get("$ref") + if isinstance(ref, str) and ref.startswith("#/"): + ref_value = self.relecov_sch_json + for part in ref[2:].split("/"): + if not isinstance(ref_value, dict): + ref_value = None + break + ref_value = ref_value.get(part) + if ref_value is None: + break + if isinstance(ref_value, dict): + enum_values = ref_value.get("enum", []) or [] ontologies_present = any( isinstance(enum, str) and re.search(r" \[\w+:.*\]$", enum) for enum in enum_values ) if not ontologies_present: continue - if "enum" in values: - enum_dict[prop] = {} - for enum in values["enum"]: - go_match = re.search(r"(.+) \[\w+:.*", enum) - if go_match: - enum_dict[prop][go_match.group(1)] = enum - else: - enum_dict[prop][enum] = enum + enum_dict[prop] = {} + for enum in enum_values: + go_match = re.search(r"(.+) \[\w+:.*", enum) + if go_match: + enum_dict[prop][go_match.group(1)] = enum + else: + enum_dict[prop][enum] = enum ontology_errors = {} for idx in range(len(m_data)): for key, e_values in enum_dict.items(): @@ -744,7 +785,8 @@ def adding_fields(self, metadata): self.log.info("Processing sample data file") s_json = {} # TODO: Change sequencing_sample_id for some unique ID used in RELECOV database - s_json["map_field"] = self.unique_sample_id + s_json["map_field"] = self.sample_data_map_field + s_json["file"] = "samples_data.json" s_json["adding_fields"] = self.samples_json_fields if self.sample_list_file: s_json["j_data"] = relecov_tools.utils.read_json_file(self.sample_list_file) @@ -883,18 +925,19 @@ def read_metadata_file(self): "type", "string" ) ) - try: - value = relecov_tools.utils.cast_value_to_schema_type( - value, schema_type - ) - except (ValueError, TypeError) as e: - log_text = ( - f"Type conversion error for {raw_key} (expected {schema_type}): " - f"{raw_value}. {e}" - ) - self.logsum.add_error(sample=sample_id, entry=log_text) - stderr.print(f"[red]{log_text}") - continue + if self.cast_values_from_schema: + try: + value = relecov_tools.utils.cast_value_to_schema_type( + value, schema_type + ) + except (ValueError, TypeError) as e: + log_text = ( + f"Type conversion error for {raw_key} (expected {schema_type}): " + f"{raw_value}. {e}" + ) + self.logsum.add_error(sample=sample_id, entry=log_text) + stderr.print(f"[red]{log_text}") + continue key_for_checks = ( canonical_key if isinstance(canonical_key, str) else str(raw_key) @@ -925,7 +968,11 @@ def read_metadata_file(self): ): if isinstance(raw_value, (float, int)): value = str(int(raw_value)) - elif isinstance(raw_value, (float, int)) and not isinstance(value, str): + elif ( + not self.cast_values_from_schema + and isinstance(raw_value, (float, int)) + and not isinstance(value, str) + ): value = str(raw_value) if ( @@ -935,7 +982,13 @@ def read_metadata_file(self): ): logtxt = f"Non-date field {raw_key} provided as date. Parsed as int" self.logsum.add_warning(sample=sample_id, entry=logtxt) - value = str(relecov_tools.utils.excel_date_to_num(raw_value)) + parsed = relecov_tools.utils.excel_date_to_num(raw_value) + if self.cast_values_from_schema: + value = relecov_tools.utils.cast_value_to_schema_type( + parsed, schema_type + ) + else: + value = str(parsed) if ( isinstance(schema_key, str) From e8a801e6ab26210b68b320242d66232c9906793b Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 11:47:57 +0100 Subject: [PATCH 09/15] Fix linting --- relecov_tools/download.py | 4 +++- relecov_tools/read_lab_metadata.py | 4 +++- relecov_tools/validate.py | 4 +--- 3 files changed, 7 insertions(+), 5 deletions(-) diff --git a/relecov_tools/download.py b/relecov_tools/download.py index 4ff65e500..7342a3ac7 100755 --- a/relecov_tools/download.py +++ b/relecov_tools/download.py @@ -133,7 +133,9 @@ def __init__( if heading_file: if not os.path.isabs(heading_file): heading_file = os.path.join( - os.path.dirname(os.path.realpath(__file__)), "conf", heading_file + os.path.dirname(os.path.realpath(__file__)), + "conf", + heading_file, ) self.metadata_lab_heading = relecov_tools.utils.read_json_file( heading_file diff --git a/relecov_tools/read_lab_metadata.py b/relecov_tools/read_lab_metadata.py index 4cf154414..530258a7f 100755 --- a/relecov_tools/read_lab_metadata.py +++ b/relecov_tools/read_lab_metadata.py @@ -88,7 +88,9 @@ def __init__( if not os.path.isdir(str(files_folder)): stderr.print("[red]No samples file nor valid files folder provided") self.log.error("No samples file nor valid files folder provided") - raise FileNotFoundError("No samples file nor valid files folder provided") + raise FileNotFoundError( + "No samples file nor valid files folder provided" + ) self.files_folder = os.path.abspath(files_folder) if sample_list_file is not None and not os.path.exists(sample_list_file): diff --git a/relecov_tools/validate.py b/relecov_tools/validate.py index 5e4e5a1e5..2e41ef599 100755 --- a/relecov_tools/validate.py +++ b/relecov_tools/validate.py @@ -465,9 +465,7 @@ def create_invalid_metadata(self, invalid_json, metadata, out_folder): idx + 1 for idx, x in enumerate(ws_sheet.values) if any( - isinstance(v, str) and v.strip() == tag - for v in x - if v is not None + isinstance(v, str) and v.strip() == tag for v in x if v is not None ) ][0] except IndexError: From 080c5926430148d8317a5655bfca5a70af290906 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Wed, 18 Feb 2026 13:10:06 +0100 Subject: [PATCH 10/15] Add add-extra-config to Github Actions --- relecov_tools/schema/relecov_schema.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/relecov_tools/schema/relecov_schema.json b/relecov_tools/schema/relecov_schema.json index e4aa02f85..06fc9211d 100644 --- a/relecov_tools/schema/relecov_schema.json +++ b/relecov_tools/schema/relecov_schema.json @@ -1281,7 +1281,7 @@ "label": "processing_date", "ontology": "OBI:0002471", "description": "The time of a sample analysis process YYYY-MM-DD", - "examples": "2022-07-15 00:00:00", + "examples": "2022-07-15", "classification": "Bioinformatics and QC metrics fields", "type": "string", "format": "date", From 90b33494f9ea6739d696fbf6dc01b5c76f273d31 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Fri, 20 Feb 2026 10:06:38 +0100 Subject: [PATCH 11/15] Apply fix with PR861 testing --- relecov_tools/conf/configuration.json | 2 +- relecov_tools/schema/relecov_schema.json | 3546 +++++++++++----------- relecov_tools/validate.py | 1 + 3 files changed, 1735 insertions(+), 1814 deletions(-) diff --git a/relecov_tools/conf/configuration.json b/relecov_tools/conf/configuration.json index c82f42ce3..017514d8d 100644 --- a/relecov_tools/conf/configuration.json +++ b/relecov_tools/conf/configuration.json @@ -181,7 +181,7 @@ }, "upload_to_ena": { "ENA_configuration": {}, - "checklist": "", + "checklist": "default_checklist", "templates_path": "", "tool": { "tool_name": "ena-upload-cli", diff --git a/relecov_tools/schema/relecov_schema.json b/relecov_tools/schema/relecov_schema.json index 06fc9211d..946d9178e 100644 --- a/relecov_tools/schema/relecov_schema.json +++ b/relecov_tools/schema/relecov_schema.json @@ -1281,7 +1281,7 @@ "label": "processing_date", "ontology": "OBI:0002471", "description": "The time of a sample analysis process YYYY-MM-DD", - "examples": "2022-07-15", + "examples": ["2022-07-15"], "classification": "Bioinformatics and QC metrics fields", "type": "string", "format": "date", @@ -3503,1870 +3503,1790 @@ }, "submitting_institution": { "enum": [ - "Instituto de Salud Carlos III", - "Red De Salud Mental De Araba (Hospital Psiquiátrico De Araba)", - "Hospital San José", - "Hospital Quirónsalud Vitoria", - "Hospital De Cuidados San Onofre, S.L. (Hospital De Cuidados San Onofre)", - "Hospital De Leza", - "Hospital Universitario De Araba (Sede Txagorritxu Y Sede Santiago)", - "Complejo Hospitalario Universitario De Albacete", - "Hospital General Universitario De Albacete", - "Clínica Santa Cristina Albacete", - "Hospital De Hellín", - "Quironsalud Hospital Albacete", - "Hospital Universitario Nuestra Señora Del Perpetuo Socorro", - "Hospital General De Almansa", - "Hospital General De Villarobledo", - "Centro De Atención A La Salud Mental La Milagrosa", - "Hospital General Universitario De Alicante", - "Clínica Vistahermosa Grupo Hla", - "Vithas Hospital Perpetuo Internacional", - "Hospital Virgen De Los Lirios", - "Sanatorio San Jorge S.L.", - "Hospital Clínica Benidorm", - "Hospital San Carlos De Denia Grupo Hla", - "Hospital General Universitario De Elche", - "Hospital General Universitario De Elda-Virgen De La Salud", - "Hospital Sant Vicent Del Raspeig", - "Sanatorio San Francisco De Borja Fontilles", - "Hospital Marina Baixa De La Vila Joiosa", - "Hospital Vega Baja De Orihuela", - "Hospital Internacional Medimar, S.A.", - "Hospital Psiquiátrico Penitenciario De Fontcalent", - "Hospital Universitario San Juan De Alicante", - "Centro Médico Acuario", - "Hospìtal Quironsalud Torrevieja", - "Hospital Imed Levante", - "Hospital Universitario De Torrevieja", - "Hospital De Denia", - "Hospital La Pedrera", - "Centro De Rehabilitación Neurológica Casaverde", - "Centro Militar de Veterinaria de la Defensa", - "Gerencia de Salud de Area de Soria", - "Hospital Universitario Vinalopo", - "Hospital Imed Elche", - "Hospital Torrecárdenas", - "Hospital De La Cruz Roja", - "Hospital Virgen Del Mar", - "Hospital La Inmaculada", - "Hospital Universitario Torrecárdenas", - "Hospital Mediterráneo", - "Hospital De Poniente", - "Hospital De Alta Resolución El Toyo", - "Hospital Nuestra Señora De Sonsoles", - "Hospital Provincial De Ávila", - "Clínica Santa Teresa", - "Complejo Asistencial De Avila", - "Hospital De Salud Mental Casta Salud Arévalo", - "Complejo Hospitalario Universitario De Badajoz", - "Hospital Universitario De Badajoz", - "Hospital Materno Infantil", - "Hospital Fundación San Juan De Dios De Extremadura", - "Hospital Don Benito-Villanueva De La Serena", - "Hospital General De Llerena", - "Hospital De Mérida", - "Centro Sociosanitario De Mérida", - "Hospital Quirónsalud Santa Justa", - "Hospital Quironsalud Clideba", - "Hospital Parque Via De La Plata", - "Hospital De Zafra", - "Complejo Hospitalario Llerena-Zafra", - "Hospital Perpetuo Socorro", - "Hospital Siberia-Serena", - "Hospital Tierra De Barros", - "Complejo H. Don Benito-Vva De La Serena", - "Complejo Hospitalario Del Área De Salud De Mérida", - "Casaverde. Centro De Rehabilitación Neurológico De Extremadura", - "Clínica Extremeña De Salud", - "Hospital Parque Vegas Altas", - "Hospital General De Mallorca", - "Hospital Psiquiàtric", - "Clínica Mutua Balear", - "Hospital De La Cruz Roja Española", - "Hospital Sant Joan De Deu", - "Clínica Rotger", - "Clinica Juaneda", - "Policlínica Miramar", - "Hospital Joan March", - "Hospital Can Misses", - "Hospital Residencia Asistida Cas Serres", - "Policlínica Nuestra Señora Del Rosario, S.A.", - "Clínica Juaneda Menorca", - "Hospital General De Muro", - "Clinica Juaneda Mahon", - "Hospital Manacor", - "Hospital Son Llatzer", - "Hospital Quirónsalud Palmaplanas", - "Hospital De Formentera", - "Hospital Comarcal D'Inca", - "Hospital Mateu Orfila", - "Hospital Universitari Son Espases", - "Servicio de Microbiologia HU Son Espases", - "Hospital De Llevant", - "Hospital Clinic Balear", - "Clínica Luz De Palma", - "Hospital Clínic De Barcelona, Seu Sabino De Arana", - "Hospital Del Mar", - "Hospital De L'Esperança", - "Hospital Clínic De Barcelona", - "Hospital Fremap Barcelona", - "Centre De Prevenció I Rehabilitació Asepeyo", - "Clínica Mc Copèrnic", - "Clínica Mc Londres", - "Hospital Egarsat Sant Honorat", - "Hospital Dos De Maig", - "Hospital El Pilar", - "Hospital Sant Rafael", - "Clínica Nostra Senyora Del Remei", - "Clínica Sagrada Família", - "Hospital Mare De Déu De La Mercè", - "Clínica Solarium", - "Hospital De La Santa Creu I Sant Pau", - "Nou Hospital Evangèlic", - "Hospital De Nens De Barcelona", - "Institut Guttmann", - "Fundació Puigvert - Iuna", - "Hestia Palau.", - "Hospital Universitari Sagrat Cor", - "Clínica Corachan", - "Clínica Tres Torres", - "Hospital Quirónsalud Barcelona", - "Centre Mèdic Delfos", - "Centre Mèdic Sant Jordi De Sant Andreu", - "Hospital Plató", - "Hospital Universitari Quirón Dexeus", - "Centro Médico Teknon, Grupo Quironsalud", - "Hospital De Barcelona", - "Centre Hospitalari Policlínica Barcelona", - "Centre D'Oftalmologia Barraquer", - "Hestia Duran I Reynals", - "Serveis Clínics, S.A.", - "Clínica Coroleu - Ssr Hestia.", - "Clínica Planas", - "Hospital Universitari Germans Trias I Pujol De Badalona", - "Hospital Municipal De Badalona", - "Centre Sociosanitari El Carme", - "Hospital Comarcal De Sant Bernabé", - "Hospital Comarcal Sant Jaume De Calella", - "Hospital De Sant Joan De Déu.", - "Clínica Nostra Senyora De Guadalupe", - "Hospital General De Granollers.", - "Hospital Universitari De Bellvitge", - "Hospital General De L'Hospitalet", - "Lab Clínic ICS Camp de Tarragona-Terres de l'Ebre. Hospital Joan XXIII", - "LABORATORI DE REFERENCIA DE CATALUNYA", - "Banc de Sang i Teixits Catalunya", - "Laboratorio Echevarne, SA Sant Cugat del Vallès", - "Fundació Sanitària Sant Josep", - "Hospital De Sant Jaume", - "Clínica Sant Josep", - "Centre Hospitalari.", - "Fundació Althaia-Manresa", - "Hospital De Sant Joan De Déu (Manresa)", - "Hospital De Sant Andreu", - "Germanes Hospitalàries. Hospital Sagrat Cor", - "Fundació Hospital Sant Joan De Déu", - "Centre Mèdic Molins, Sl", - "Hospital De Mollet", - "Hospital De Sabadell", - "Benito Menni,Complex Assistencial En Salut Mental.", - "Parc Sanitari Sant Joan De Déu - Recinte Sant Boi.", - "Parc Sanitari Sant Joan De Déu - Hospital General", - "Hospital De Sant Celoni.", - "Hospital Universitari General De Catalunya", - "Casal De Curació", - "Hospital Residència Sant Camil - Consorci Sanitari Del Garraf.", - "Centres Assistencials Dr. Emili Mira I López (Recinte Torribera).", - "Fundació Hospital De L'Esperit Sant", - "Hospital De Terrassa.", - "Hospital De Sant Llàtzer", - "Hospital Universitari Mútua De Terrassa", - "Hospital Universitari De Vic", - "Hospital De La Santa Creu", - "Hospital De Viladecans", - "Hospital Sant Antoni Abat - Consorci Sanitari Del Garraf.", - "Centre Sociosanitari Can Torras", - "Hestia Maresme", - "Prytanis Sant Boi Centre Sociosanitari", - "Centre Sociosanitari Verge Del Puig", - "Residència L'Estada", - "Residència Puig-Reig", - "Residència Santa Susanna", - "Hospital De Mataró", - "Hospital Universitari Vall D'Hebron", - "Centre Polivalent Can Fosc", - "Hospital Sociosanitari Mutuam Güell", - "Mútua De Granollers, Mútua De Previsió Social A Prima Fixa", - "Hospital Comarcal De L'Alt Penedès.", - "Àptima Centre Clínic - Mútua De Terrassa", - "Institut Català D'Oncologia - Hospital Duran I Reynals", - "Sar Mont Martí", - "Regina Sar", - "Centre Vallparadís", - "Ita Maresme", - "Clínica Llúria", + "Adinfa, Sociedad Cooperativa Andaluza", + "Alm Univass S.L.", "Antic Hospital De Sant Jaume I Santa Magdalena", - "Parc Sanitari Sant Joan De Déu - Numància", - "Prytanis Hospitalet Centre Sociosanitari", - "Comunitat Terapèutica Arenys De Munt", - "Hospital Sociosanitari Pere Virgili", + "Aptima Centre Clinic - Mutua De Terrassa", + "Area Psiquiatrica San Juan De Dios", + "Avances Medicos S.A.", + "Avantmedic", + "Banc de Sang i Teixits Catalunya", "Benito Menni Complex Assistencial En Salut Mental", - "Hospital Sanitas Cima", - "Parc Sanitari Sant Joan De Deu - Brians 1.", - "Institut Català D'Oncologia - Hospital Germans Trias I Pujol", - "CAP La Salut EAP Badalona", - "CAP Mataró-6 (Gatassa)", - "CAP Can Mariner Santa Coloma-1", - "CAP Montmeló (Montornès)", + "Benito Menni, Complex Assistencial En Salut Mental", + "Cap La Salut", + "Cap Mataro Centre", + "Cap Montmelo", + "Cap Montornes", + "Casal De Curacio", + "Casaverde Centro De Rehabilitacion Neurologico De Extremadura S.L.", + "Casta Guadarrama", + "Castell D'Oliana Residencial,S.L", + "Catlab-Centre Analitiques Terrassa, Aie", "Centre Collserola Mutual", - "Centre Sociosanitari Sarquavitae Sant Jordi", - "Hospital General Penitenciari", - "Centre Sociosanitari De L'Hospitalet - Consorci Sanitari Integral", - "Sar La Salut Josep Servat", - "Clínica Creu Blanca", - "Hestia Gràcia", - "Centre Sociosanitari D'Esplugues", - "Centre Sociosanitari Ricard Fortuny", - "Centre Residencial Amma Diagonal", - "Centre Fòrum", - "Centre Sociosanitari Blauclínic Dolors Aleu", - "Parc Sanitari Sant Joan De Déu - Til·Lers", - "Clínica Galatea", - "Hospital D'Igualada", + "Centre D'Hospitalitzacio I Hospital De Dia Trastorns De La Conducta", + "Centre D'Oftalmologia Barraquer", + "Centre De Prevencio I Rehabilitacio Asepeyo", + "Centre De Salut Doctor Vilaseca-Can Mariner", + "Centre Forum", + "Centre Geriatric Del Maresme", + "Centre Hospitalari Policlinica Barcelona", + "Centre Integral De Serveis En Salut Mental Comunitaria", + "Centre La Creueta", + "Centre Medic Molins, Sl", + "Centre Mq Reus", + "Centre Palamos Gent Gran", + "Centre Polivalent Can Fosc", + "Centre Sanitari Del Solsones, Fpc", "Centre Social I Sanitari Frederica Montseny", - "Parc Sanitari Sant Joan De Deu-Serveis Sanitaris Centre Penitenciari Brians-2", - "Centre Integral De Serveis En Salut Mental Comunitària", - "Centre Sociosanitari Sant Jordi De La Vall D'Hebron", - "Lepant Residencial Qgg, Sl", - "Mapfre Quavitae Barcelona", - "Unitat Polivalent Salut Mental Barcelona-Nord", - "Cqm Clínic Maresme, Sl", - "Serveis Sanitaris La Roca Del Valles 2", - "Clínica Del Vallès", - "Centre Gerontològic Amma Sant Cugat", - "Serveis Sanitaris Sant Joan De Vilatorrada", - "Centre Sociosanitari Stauros", - "Hospital De Sant Joan Despí Moisès Broggi", - "Amma Horta", - "Unitat Polivalent Benito Menni En Salut Mental De L'Hospitalet-El Prat De Llobregat", + "Centre Sociosanitari Bernat Jaume", + "Centre Sociosanitari Blauclinic Dolors Aleu", + "Centre Sociosanitari Can Torras", + "Centre Sociosanitari Ciutat De Reus", + "Centre Sociosanitari D'Esplugues", + "Centre Sociosanitari De L'Hospitalet - Consorci Sanitari Integral", + "Centre Sociosanitari De Puigcerda", "Centre Sociosanitari Del Centre Integral De Salut Cotxeres", - "Clínica Sant Antoni", - "Clínica Diagonal", - "Hospital Sociosanitari De Mollet", + "Centre Sociosanitari El Carme", + "Centre Sociosanitari I Residencia Assistida Salou", "Centre Sociosanitari Isabel Roig", - "Iván Mañero Clínic", - "Institut Trastorn Límit", - "Centre D'Hospitalització I Hospital De Dia Trastorns De La Conducta", - "Sarquavitae Bonanova", - "Centre La Creueta", - "Unitat Terapèutica-Educativa Acompanya'M", - "Hospital Fuente Bermeja", - "Hospital Recoletas De Burgos", - "Hospital San Juan De Dios De Burgos", - "Hospital Santos Reyes", - "Hospital Residencia Asistida De La Luz", - "Hospital Santiago Apóstol", - "Complejo Asistencial Universitario De Burgos", - "Hospital Universitario De Burgos", - "Hospital San Pedro De Alcántara", - "Hospital Provincial Nuestra Señora De La Montaña", - "Hospital Ciudad De Coria", - "Hospital Campo Arañuelo", - "Hospital Virgen Del Puerto", - "Hospital Sociosanitario De Plasencia", - "Complejo Hospitalario De Cáceres", - "Hospital Quirón Salud De Cáceres", - "Clínica Soquimex", - "Clinica Quirúrgica Cacereña, S.A-(Clínica San Francisco)", - "Hospital Universitario Puerta Del Mar", - "Clínica La Salud", - "Hospital San Rafael", - "Hospital Punta De Europa", - "Clínica Los Álamos", - "Hospital Universitario De Jerez De La Frontera", - "Hospital San Juan Grande", - "Hospital De La Línea De La Concepción", - "Hospital General Santa María Del Puerto", - "Hospital Universitario De Puerto Real", - "Hospital Virgen De Las Montañas", - "Hospital Virgen Del Camino", - "Hospital Jerez Puerta Del Sur", - "Hospital Viamed Bahía De Cádiz", - "Hospital Punta De Europa", - "Hospital Viamed Novo Sancti Petri", - "Clínica Serman - Instituto Médico", - "Hospital Quirón Campo De Gibraltar", - "Hospital Punta Europa. Unidad De Cuidados Medios", - "Hospital San Carlos", - "Hospital De La Línea De La Concepción", - "Hospital General Universitario De Castellón", - "Hospital La Magdalena", - "Consorcio Hospitalario Provincial De Castellón", - "Hospital Comarcal De Vinaròs", - "Hospital Universitario De La Plana", - "Instituto De Traumatologia De Unión De Mutuas (Matepss Nº 267)", - "Hospital Rey D. Jaime", - "Servicios Sanitarios Del Centro Penitenciario De Castellón Ii (Albocàsser)", - "Servicios Sanitarios Y Asistenciales", - "Hospital Quirónsalud Ciudad Real", - "Hospital General La Mancha Centro", - "Hospital Virgen De Altagracia", - "Hospital Santa Bárbara", - "Hospital General De Valdepeñas", - "Hospital General De Ciudad Real", - "Hospital General De Tomelloso", - "Hospital Universitario Reina Sofía", - "Hospital Los Morales", - "Hospital Materno-Infantil Del H.U. Reina Sofía", - "Hospital Provincial", - "Hospital De La Cruz Roja De Córdoba", - "Hospital San Juan De Dios De Córdoba", - "Hospital Infanta Margarita", - "Hospital Valle De Los Pedroches", - "Hospital De Montilla", - "Hospital La Arruzafa-Instituto De Oftalmología", - "Hospital De Alta Resolución De Puente Genil", - "Hospital De Alta Resolución Valle Del Guadiato", - "Hospital General Del H.U. Reina Sofía", - "Hospital Quironsalud Córdoba", - "Complexo Hospitalario Universitario A Coruña", - "Hospital Universitario A Coruña", - "Hospital Teresa Herrera (Materno-Infantil)", - "Hospital Maritimo De Oza", + "Centre Sociosanitari Llevant", + "Centre Sociosanitari Parc Hospitalari Marti I Julia", + "Centre Sociosanitari Ricard Fortuny", + "Centre Sociosanitari Sant Jordi De La Vall D'Hebron", + "Centre Sociosanitari Sarquavitae Sant Jordi", + "Centre Sociosanitari Verge Del Puig", + "Centres Assistencials Dr. Emili Mira I Lopez (Recinte Torribera).", + "Centro Asistencial Albelda De Iregua", + "Centro Asistencial Hnas. Hospitalarias Del Sagrado Corazon De Jesus", + "Centro Asistencial San Juan De Dios", + "Centro De Atencion A La Salud Mental, La Milagrosa", + "Centro De Rehabilitacion Neurologica Casaverde", + "Centro De Rehabilitacion Psicosocial Nuestra Señora Del Pilar", + "Centro De Rehabilitacion Psicosocial San Juan De Dios", + "Centro De Rehabilitacion Psicosocial Santo Cristo De Los Milagros", + "Centro De Tratamiento De Drogodependientes El Alba", + "Centro De Tratamiento Integral Montevil", + "Centro Habilitado Ernest Lluch", + "Centro Hospitalario Benito Menni", + "Centro Hospitalario De Alta Resolucion De Cazorla", + "Centro Hospitalario Padre Menni", + "Centro Medico De Asturias", + "Centro Medico El Carmen", + "Centro Medico Pintado", + "Centro Medico Teknon, Grupo Quironsalud", + "Centro Militar de Veterinaria de la Defensa", + "Centro Neuropsiquiatrico Nuestra Señora Del Carmen", "Centro Oncoloxico De Galicia", - "Hospital Quironsalud A Coruña", - "Hospital Hm Modelo", - "Maternidad Hm Belen", - "Hospital Abente Y Lago", - "Complexo Hospitalario Universitario De Ferrol", - "Hospital Universitario Arquitecto Marcide", - "Hospital Juan Cardona", - "Hospital Naval", - "Complexo Hospitalario Universitario De Santiago", - "Hospital Clinico Universitario De Santiago", - "Hospital Gil Casares", - "Hospital Medico Cirurxico De Conxo", - "Hospital Psiquiatrico De Conxo", - "Hospital Hm Esperanza", - "Hospital Hm Rosaleda", - "Sanatorio La Robleda", - "Hospital Da Barbanza", - "Hospital Virxe Da Xunqueira", - "Hm Modelo (Grupo)", - "Hospital Hm Rosaleda - Hm La Esperanza", - "Hospital Virgen De La Luz", - "Hospital Recoletas Cuenca S.L.U.", - "Hospital Universitari De Girona Dr. Josep Trueta", - "Clínica Bofill", - "Clínica Girona", - "Clínica Quirúrgica Onyar", - "Clínica Salus Infirmorum", - "Hospital De Sant Jaume", - "Hospital De Campdevànol", - "Hospital De Figueres", - "Clínica Santa Creu", - "Hospital Sociosanitari De Lloret De Mar", - "Hospital D'Olot I Comarcal De La Garrotxa", - "Hospital De Palamós", - "Residència De Gent Gran Puig D'En Roca", - "Hospital Comarcal De Blanes", - "Residència Geriàtrica Maria Gay", - "Hospital Sociosanitari Mutuam Girona", - "Centre Sociosanitari De Puigcerdà", - "Centre Sociosanitari Bernat Jaume", - "Institut Català D'Oncologia Girona - Hospital Josep Trueta", - "Hospital Santa Caterina-Ias", - "Centre Palamós Gent Gran", - "Centre Sociosanitari Parc Hospitalari Martí I Julià", - "Hospital De Cerdanya / Hôpital De Cerdagne", - "Hospital General Del H.U. Virgen De Las Nieves", - "Hospital De Neurotraumatología Y Rehabilitación", - "Hospital De La Inmaculada Concepción", - "Hospital De Baza", - "Hospital Santa Ana", - "Hospital Universitario Virgen De Las Nieves", - "Hospital De Alta Resolución De Guadix", - "Hospital De Alta Resolución De Loja", - "Hospital Vithas La Salud", - "Hospital Universitario San Cecilio", - "Microbiología HUC San Cecilio", - "Hospital Materno-Infantil Virgen De Las Nieves", - "Hospital Universitario De Guadalajara", - "Clínica La Antigua", - "Clínica Dr. Sanz Vázquez", - "U.R.R. De Enfermos Psíquicos Alcohete", - "Instituto De Enfermedades Neurológicas De Castilla-La Mancha", - "Mutualia-Clinica Pakea", - "Hospital Ricardo Bermingham (Fundación Matia)", - "Policlínica Gipuzkoa S.A.", - "Hospital Quirón Salud Donostia", - "Fundación Onkologikoa Fundazioa", - "Organización Sanitaria Integrada Bidasoa (Osi Bidasoa)", - "Organización Sanitaria Integrada Alto Deba", - "Hospital Aita Menni", - "Hospital Psiquiátrico San Juan De Dios", - "Clinica Santa María De La Asunción, (Inviza, S.A.)", - "Sanatorio De Usurbil, S.L.", - "Hospital De Zumarraga", - "Hospital De Mendaro", - "Hospital Universitario Donostia-Donostia Unibertsitate Ospitalea", - "Hospital San Juan De Dios Donostia", - "Hospital Infanta Elena", - "Hospital Vázquez Díaz", - "Hospital Blanca Paloma", - "Clínica Los Naranjos", - "Hospital De Riotinto", - "Hospital Universitario Juan Ramón Jiménez", - "Hospital Juan Ramón Jiménez", - "Hospital Costa De La Luz", - "Hospital Virgen De La Bella", - "Hospital General San Jorge", - "Centro De Rehab. Psicosocial Santo Cristo De Los Milagros", - "Hospital Sagrado Corazón De Jesús", - "Hospital Viamed Santiago", - "Hospital De Barbastro", - "Hospital De Jaca.Salud", + "Centro Residencial Domusvi La Salut Josep Servat.", + "Centro Salud Mental Perez Espinosa", + "Centro San Francisco Javier", + "Centro San Juan De Dios Ciempozuelos", "Centro Sanitario Bajo Cinca-Baix Cinca", - "Hospital General Del H.U. De Jaén", - "Hospital Doctor Sagaz", - "Hospital Neurotraumatológico Del H.U. De Jaén", - "Clínica Cristo Rey", - "Hospital San Agustín", - "Hospital San Juan De La Cruz", - "Hospital Universitario De Jaén", - "Hospital Alto Guadalquivir", - "Hospital Materno-Infantil Del H.U. De Jaén", - "Hospital De Alta Resolución Sierra De Segura", - "Hospital De Alta Resolución De Alcaudete", - "Hospital De Alta Resolución De Alcalá La Real", - "Hospital De León", - "Hospital Monte San Isidro", - "Regla Hm Hospitales", - "Hospital Hm San Francisco", - "Hospital Santa Isabel", - "Hospital El Bierzo", - "Hospital De La Reina", - "Hospital San Juan De Dios", - "Complejo Asistencial Universitario De León", - "Clínica Altollano", - "Clínica Ponferrada", - "Hospital Valle De Laciana", - "Hospital Universitari Arnau De Vilanova De Lleida", - "Hospital Santa Maria", - "Vithas Hospital Montserrat", - "Clínica Perpetuo Socorro De Lérida, Grupo Hla, Slu", - "Clínica Terres De Ponent", - "Clínica Psiquiàtrica Bellavista", - "Fundació Sant Hospital.", - "Centre Sanitari Del Solsonès, Fpc", - "Hospital Comarcal Del Pallars", - "Espitau Val D'Aran", - "Hestia Balaguer.", - "Residència Terraferma", - "Castell D'Oliana Residencial,S.L", - "Hospital Jaume Nadal Meroles", - "Sant Joan De Déu Terres De Lleida", - "Reeixir", - "Hospital Sant Joan De Déu Lleida", - "Complejo Hospitalario San Millan San Pedro De La Rioja", - "Hospital San Pedro", - "Hospital General De La Rioja", - "Policlínico Riojano Nuestra Señora De Valvanera, S.A.", - "Fundación Hospital Calahorra", - "Clínica Los Manzanos", - "Centro Asistencial De Albelda De Iregua", - "Centro Sociosanitario De Convalecencia Los Jazmines", - "Centro Sociosanitario De Convalecencia Nuestra Señora Virgen Del Carmen", - "Complexo Hospitalario Universitario De Lugo", - "Hospital De Calde (Psiquiatrico)", - "Hospital Polusa", - "Sanatorio Nosa Señora Dos Ollos Grandes", - "Hospital Publico Da Mariña", - "Hospital De Monforte", - "Hospital Universitario Lucus Augusti", - "Hospital Universitario La Paz", - "Hospital Ramón Y Cajal", - "Hospital Universitario 12 De Octubre", - "Hospital Clínico San Carlos", - "Hospital Virgen De La Torre", - "Hospital Universitario Santa Cristina", - "Hospital Universitario De La Princesa", - "Hospital Infantil Universitario Niño Jesus", - "Hospital Central De La Cruz Roja San José Y Santa Adela", - "Hospital Carlos Iii", - "Hospital Cantoblanco", - "Complejo Hospitalario Gregorio Marañón", - "Hospital General Universitario Gregorio Marañón", - "Instituto Provincial De Rehabilitación", - "Hospital Dr. R. Lafora", - "Sanatorio Nuestra Señora Del Rosario", - "Hospital De La V.O.T. De San Francisco De Asís", - "Hospital Quirónsalud San José", - "Hospital Beata María Ana. Hh. Hospitalarias Sgdo. C. De Jesús", - "Clínica Santa Elena", - "Hospital San Francisco De Asís", - "Clínica San Miguel", - "Clínica Nuestra Sra. De La Paz", - "Fundación Instituto San José", - "Hospital Universitario Fundación Jiménez Díaz", - "Hestia Madrid (Clínica Sear, S.A.)", - "Hospital Ruber Juan Bravo 39", - "Hospital Vithas Nuestra Señora De América", - "Hospital Virgen De La Paloma, S.A.", - "Clínica La Luz, S.L.", - "Fuensanta S.L. (Clínica Fuensanta)", - "Hospital Ruber Juan Bravo 49", - "Hospital Ruber Internacional", - "Clínica La Milagrosa", - "Hospital Universitario La Zarzuela", - "Hospital Universitario Hm Nuevo Belen", - "Sanatorio Neuropsiquiátrico Doctor León", - "Instituto De Investigaciones Neuropsiquiátricas Dr. López Ibor", - "Sanatorio Esquerdo, S.A.", - "Hospital Central De La Defensa Gomez Ulla", - "Hospital Universitario Príncipe De Asturias", - "Hospital De La Fuenfría", - "Hh. Hh. Sgdo. C. De Jesús. Complejo Asistencial Benito Menni", - "Centro San Juan De Dios", - "Hospital Monográfico Asepeyo De Traumat. Cirugía Y Rehabilitación", - "Hospital Guadarrama", - "Hospital Universitario Severo Ochoa", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain-1 Luna", - "Fremap Hospital Y Centro De Rehabilitación De Majadahonda", - "Hospital Universitario De Móstoles", - "Hospital El Escorial", - "Hospital Virgen De La Poveda", - "Hospital De Madrid", - "Hospital Universitario De Getafe", - "Clínica Isadora", - "Hospital Universitario Moncloa", - "Hospital Universitario Fundación Alcorcón", + "Centro Sanitario Cinco Villas", + "Centro Sanitario Residencial Las Palmas (Cesar Las Palmas)", + "Centro Sociosanitario De Convalecencia Nuestra Señora Virgen Del Carmen", + "Centro Sociosanitario De Convalencencia Los Jazmines", + "Centro Sociosanitario De Merida", + "Centro Sociosanitario De Plasencia", + "Centro Terapeutico Vista Alegre", + "Centro de Investigación Biomédica de Aragón", + "Clinica Activa Mutua 2008", + "Clinica Arcangel San Miguel - Pamplona", + "Clinica Asturias", + "Clinica Bandama", + "Clinica Bofill", + "Clinica Cajal", "Clinica Cemtro", - "Hospital Universitario Hm Montepríncipe", - "Centro Oncológico Md Anderson International España", - "Hospital Quironsalud Sur", - "Hospital Universitario De Fuenlabrada", - "Hospital Universitario Hm Torrelodones", - "Complejo Universitario La Paz", - "Hospital La Moraleja", - "Hospital Los Madroños", - "Hospital Quirónsalud Madrid", - "Hospital Centro De Cuidados Laguna", - "Hospital Universitario Madrid Sanchinarro", - "Hospital Universitario Infanta Elena", - "Vitas Nisa Pardo De Aravaca.", - "Hospital Universitario Infanta Sofía", - "Hospital Universitario Del Henares", - "Hospital Universitario Infanta Leonor", - "Hospital Universitario Del Sureste", - "Hospital Universitario Del Tajo", - "Hospital Universitario Infanta Cristina", - "Hospital Universitario Puerta De Hierro Majadahonda", - "Casta Guadarrama", - "Hospital Universitario De Torrejón", - "Hospital Rey Juan Carlos", - "Hospital General De Villalba", - "Hm Universitario Puerta Del Sur", - "Hm Valles", - "Hospital Casaverde De Madrid", - "Clínica Universidad De Navarra", - "Complejo Hospitalario Universitario Infanta Leonor", - "Clínica San Vicente", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain-2 Aragón", - "Hospital General Del H.U.R. De Málaga", - "Hospital Virgen De La Victoria", - "Hospital Civil", - "Centro Asistencial San Juan De Dios", - "Centro Asistencial Hnas. Hosp. Del Sagrado Corazón De Jesús", - "Hospital Vithas Parque San Antonio", - "Hospital El Ángel", - "Hospital Doctor Gálvez", - "Clínica De La Encarnación", - "Hospital Psiquiátrico San Francisco De Asís", - "Clínica Nuestra Sra. Del Pilar", - "Hospital De Antequera", - "Hospital Quironsalud Marbella", - "Hospital De La Axarquía", - "Hospital Marítimo De Torremolinos", - "Hospital Universitario Regional De Málaga", - "Hospital Universitario Virgen De La Victoria", - "Hospital Materno-Infantil Del H.U.R. De Málaga", - "Hospital Costa Del Sol", - "Hospital F.A.C. Doctor Pascual", - "Clínica El Seranil", - "Hc Marbella International Hospital", - "Hospital Humanline Banús", - "Clínica Rincón", - "Hospiten Estepona", - "Fundación Cudeca. Centro De Cuidados Paliativos", - "Xanit Hospital Internacional", - "Comunidad Terapéutica San Antonio", - "Hospital De Alta Resolución De Benalmádena", - "Hospital Quironsalud Málaga", - "Cenyt Hospital", - "Clínica Ochoa", - "Centro De Reproducción Asistida De Marbella (Ceram)", - "Helicópteros Sanitarios Hospital", - "Hospital De La Serranía", - "Hospital Valle Del Guadalhorce De Cártama", - "Hospital Clínico Universitario Virgen De La Arrixaca", - "Hospital General Universitario Reina Sofía", - "Plataforma de Medicina Computacional, Fundación Progreso y Salud", - "Hospital Psiquiátrico Roman Alberca", - "Hospital Quirónsalud Murcia", - "Hospital La Vega", - "Hospital Mesa Del Castillo", - "Sanatorio Doctor Muñoz S.L.", - "Clínica Médico-Quirúrgica San José, S.A.", - "Hospital Comarcal Del Noroeste", - "Clínica Doctor Bernal S.L.", - "Hospital Santa María Del Rosell", - "Santo Y Real Hospital De Caridad", - "Hospital Nuestra Señora Del Perpetuo Socorro", - "Fundacion Hospital Real Piedad", - "Hospital Virgen Del Alcázar De Lorca", - "Hospital General Universitario Los Arcos Del Mar Menor", - "Hospital Virgen Del Castillo", - "Hospital Rafael Méndez", - "Hospital General Universitario J.M. Morales Meseguer", - "Hospital Ibermutuamur-Patología Laboral", - "Hospital De La Vega Lorenzo Guirao", - "Hospital De Molina", - "Clínica San Felipe Del Mediterráneo", - "Hospital De Cuidados Medios Villademar", - "Residencia Los Almendros", - "Complejo Hospitalario Universitario De Cartagena", - "Hospital General Universitario Santa Lucia", - "Consorcio LUCIA (SACYL,ITACYL UBU,UVa)", - "Hospital Perpetuo Socorro Alameda", - "Hospital C.M.V. Caridad Cartagena", - "Centro San Francisco Javier", + "Clinica Corachan", + "Clinica Coroleu - Ssr Hestia.", + "Clinica Creu Blanca", + "Clinica Cristo Rey", + "Clinica De Salud Mental Miguel De Mañara", + "Clinica Diagonal", + "Clinica Doctor Sanz Vazquez", + "Clinica Dr. Leon", + "Clinica El Seranil", + "Clinica Ercilla Mutualia", + "Clinica Galatea", + "Clinica Girona", + "Clinica Guimon, S.A.", + "Clinica Imq Zorrotzaurre", + "Clinica Imske", + "Clinica Indautxu, S.A.", + "Clinica Isadora S.A.", + "Clinica Jorgani", + "Clinica Juaneda", + "Clinica Juaneda Mahon", + "Clinica Juaneda Menorca", + "Clinica La Luz, S.L.", + "Clinica Lluria", + "Clinica Lopez Ibor", + "Clinica Los Alamos", + "Clinica Los Manzanos", + "Clinica Los Naranjos", + "Clinica Luz De Palma", + "Clinica Mc Copernic", + "Clinica Mc Londres", + "Clinica Mi Nova Aliança", + "Clinica Montpellier, Grupo Hla, S.A.U", + "Clinica Nostra Senyora De Guadalupe", + "Clinica Nostra Senyora Del Remei", + "Clinica Nuestra Se?Ora De Aranzazu", + "Clinica Nuestra Señora De La Paz", + "Clinica Perpetuo Socorro De Lerida, Grupo Hla, Slu", + "Clinica Planas", + "Clinica Ponferrada Recoletas", + "Clinica Psicogeriatrica Josefina Arregui", + "Clinica Psiquiatrica Bellavista", "Clinica Psiquiatrica Padre Menni", - "Clinica Universidad De Navarra", - "CATLAB", + "Clinica Psiquiatrica Somio", + "Clinica Quirurgica Onyar", + "Clinica Residencia El Pinar", + "Clinica Rotger", + "Clinica Sagrada Familia", + "Clinica Salus Infirmorum", + "Clinica San Felipe", "Clinica San Miguel", - "Clínica San Fermín", - "Centro Hospitalario Benito Menni", - "Hospital García Orcoyen", - "Hospital Reina Sofía", - "Clínica Psicogeriátrica Josefina Arregui", - "Complejo Hospitalario De Navarra", - "Complexo Hospitalario Universitario De Ourense", - "Hospital Universitario Cristal", - "Hospital Santo Cristo De Piñor (Psiquiatrico)", - "Hospital Santa Maria Nai", - "Centro Medico El Carmen", - "Hospital De Valdeorras", - "Hospital De Verin", + "Clinica San Rafael", + "Clinica Sant Antoni", + "Clinica Sant Josep", + "Clinica Santa Creu", + "Clinica Santa Isabel", + "Clinica Santa Maria De La Asuncion (Inviza S. A.)", "Clinica Santa Teresa", - "Hospital Monte Naranco", - "Centro Médico De Asturias", - "Clínica Asturias", - "Clínica San Rafael", - "Hospital Universitario San Agustín", - "Fundación Hospital De Avilés", - "Hospital Carmen Y Severo Ochoa", - "Hospital Comarcal De Jarrio", - "Hospital De Cabueñes", - "Sanatorio Nuestra Señora De Covadonga", - "Fundación Hospital De Jove", - "Hospital Begoña De Gijón, S.L.", - "Hospital Valle Del Nalón", - "Fundació Fisabio", - "Fundación Sanatorio Adaro", - "Hospital V. Álvarez Buylla", - "Hospital Universitario Central De Asturias", - "Hospital Del Oriente De Asturias Francisco Grande Covián", - "Hospital De Luarca -Asistencia Médica Occidentalsl", - "Instituto Salud Mental Pérez-Espinosa Oria, S.L.", - "Clínica Psiquiátrica Somió", - "Clínica Cirugía Plástica Y Estética Fernández Y Fernández Cossío", - "Hospital Gijón", - "Centro Terapéutico Vista Alegre", - "Instituto Oftalmológico Fernández -Vega", - "Hospital Rio Carrión", - "Hospital San Telmo", - "Hospital Psiquiatrico San Luis", - "Área Psiquiátrica Del Centro Asistencial San Juan De Dios", - "Hospital Recoletas De Palencia", + "Clinica Soquimex", + "Clinica Tara", + "Clinica Terres De L'Ebre", + "Clinica Tres Torres", + "Clinica Universidad De Navarra", + "Clinica Virgen Blanca", + "Clinica Vistahermosa Grupo Hla", + "Clinicas Del Sur Slu", + "Complejo Asistencial Benito Menni", + "Complejo Asistencial De Soria", + "Complejo Asistencial De Zamora", + "Complejo Asistencial De Ávila", + "Complejo Asistencial Universitario De Burgos", + "Complejo Asistencial Universitario De León", "Complejo Asistencial Universitario De Palencia", - "Hospital Universitario Materno-Infantil De Canarias", - "Hospital Universitario Insular De Gran Canaria", - "Unidades Clínicas Y De Rehabilitación (Ucyr)", - "Sanatorio Dermatológico Regional", - "Fundación Benéfica Canaria Casa Asilo San José", - "Vithas Hospital Santa Catalina", - "Hospital Policlínico La Paloma, S.A.", - "Instituto Policlínico Cajal, S.L.", - "Hospital San Roque Las Palmas De Gran Canaria", - "Clínica Bandama", - "Hospital Doctor José Molina Orosa", - "Hospital Insular De Lanzarote", - "Hospital General De Fuerteventura", - "Quinta Médica De Reposo, S.A.", - "Hospital De San Roque Guía", - "Hospital Ciudad De Telde", - "Complejo Hospitalario Universitario Insular-Materno Infantil", - "Hospital Clínica Roca (Roca Gestión Hospitalaria)", - "Hospital Universitario De Gran Canaria Dr. Negrín", - "Hospiten Lanzarote (Clínicas Del Sur S.L.U.)", + "Complejo Asistencial Universitario De Salamanca", + "Complejo Hospital Costa Del Sol", + "Complejo Hospital Infanta Margarita", + "Complejo Hospital La Merced", + "Complejo Hospital San Juan De La Cruz", + "Complejo Hospital Universitario Clínico San Cecilio", + "Complejo Hospital Universitario De Jaén", + "Complejo Hospital Universitario De Puerto Real", + "Complejo Hospital Universitario Juan Ramón Jiménez", + "Complejo Hospital Universitario Puerta Del Mar", + "Complejo Hospital Universitario Regional De Málaga", + "Complejo Hospital Universitario Reina Sofía", + "Complejo Hospital Universitario Torrecárdenas", + "Complejo Hospital Universitario Virgen De La Victoria", + "Complejo Hospital Universitario Virgen De Las Nieves", + "Complejo Hospital Universitario Virgen De Valme", + "Complejo Hospital Universitario Virgen Del Rocío", + "Complejo Hospital Universitario Virgen Macarena", + "Complejo Hospital Valle De Los Pedroches", + "Complejo Hospitalario De Albacete", + "Complejo Hospitalario De Cartagena Chc", + "Complejo Hospitalario De Cáceres", + "Complejo Hospitalario De Don Benito-Villanueva De La Serena", + "Complejo Hospitalario De Toledo", + "Complejo Hospitalario Del Área De Salud De Mérida", + "Complejo Hospitalario Gregorio Marañón", + "Complejo Hospitalario Infanta Leonor", + "Complejo Hospitalario La Paz", + "Complejo Hospitalario Llerena-Zafra", + "Complejo Hospitalario San Pedro Hospital De La Rioja", + "Complejo Hospitalario Universitario De Badajoz", + "Complejo Hospitalario Universitario De Canarias", "Complejo Hospitalario Universitario De Gran Canaria Dr. Negrín", - "Hospital San Roque Maspalomas", - "Clínica Parque Fuerteventura", - "Clinica Jorgani", - "Hospital Universitario Montecelo", - "Gerencia de Atención Primaria Pontevedra Sur", - "Hospital Provincial De Pontevedra", - "Hestia Santa Maria", - "Hospital Quironsalud Miguel Dominguez", - "Instituto De Neuro-Rehabilitacion Quironsalud Pontevedra", - "Hospital Meixoeiro", - "Hospital Nicolas Peña", - "Fremap, Hospital De Vigo", - "Hospital Povisa", - "Hospital Hm Vigo", - "Vithas Hospital Nosa Señora De Fatima", - "Concheiro Centro Medico Quirurgico", - "Centro Medico Pintado", - "Sanatorio Psiquiatrico San Jose", - "Clinica Residencia El Pinar", + "Complejo Hospitalario Universitario Insular Materno Infantil", + "Complejo Hospitalario Universitario Nuestra Señora De Candelaria", + "Complejo Instituto Psiquiátrico Servicios De Salud Mental José Germain", + "Complexo Hospitalario Universitario A Coruña", + "Complexo Hospitalario Universitario De Ferrol", + "Complexo Hospitalario Universitario De Lugo", + "Complexo Hospitalario Universitario De Ourense", "Complexo Hospitalario Universitario De Pontevedra", - "Hospital Do Salnes", + "Complexo Hospitalario Universitario De Santiago", "Complexo Hospitalario Universitario De Vigo", - "Hospital Universitario Alvaro Cunqueiro", - "Plataforma de Genómica y Bioinformática", - "Complejo Asistencial Universitario De Salamanca", - "Hospital Universitario De Salamanca", - "Hospital General De La Santísima Trinidad", - "Hospital Los Montalvos", - "Complejo Hospitalario Universitario Ntra. Sra. De Candelaria", - "Hospital Universitario Nuestra Señora De Candelaria", - "Hospital De Ofra", - "Instituto Tecnológico y de Energías Renovables, S.A. (ITER, S.A.)", - "Unidades Clínicas Y De Rehabilitación De Salud Mental", - "Hospital Febles Campos", - "Hospital Quirón Tenerife", - "Vithas Hospital Santa Cruz", - "Clínica Parque, S.A.", - "Hospiten Sur", - "Hospital Universitario De Canarias (H.U.C)", - "Hospital De La Santísima Trinidad", - "Clínica Vida", - "Hospital Bellevue", - "Hospital Nuestra Señora De Guadalupe", - "Hospital Nuestra Señora De Los Dolores", - "Hospital Insular Ntra. Sra. De Los Reyes", - "Hospital Quirón Costa Adeje", - "Hospital Rambla S.L.", - "Hospital General De La Palma", - "Complejo Hospitalario Universitario De Canarias", - "Hospital Del Norte", - "Hospital Del Sur", - "Clínica Tara", - "Hospital Universitario Marqués De Valdecilla", - "Hospital Ramón Negrete", - "Hospital Santa Clotilde - Orden Hospitalaria San Juan De Dios.", - "Centro Hospitalario Padre Menni", - "Hospital Comarcal De Laredo", - "Hospital Sierrallana", - "Clínica Mompía, S.A.U.", - "Complejo Asistencial De Segovia", - "Hospital General De Segovia", - "Hospital Recoletas Segovia Ntra. Sra. De La Misericordia", - "Unidad De Rehabilitación Psiquiátrica Ntra. Sra. De La Fuencisla", - "Hospital General Del H.U. Virgen Del Rocío", - "Hospital Virgen De Valme", - "Hospital Virgen Macarena", - "Hospital San Lázaro", - "Hospital Victoria Eugenia De La Cruz Roja Española", - "Hospital San Juan De Dios De Sevilla", - "Hospital Duques Del Infantado", - "Clínica Santa Isabel", - "Hospital Quironsalud Sagrado Corazón", - "Hospital Fátima", - "Hospital Quironsalud Infanta Luisa", - "Clínica Nuestra Señora De Aránzazu", - "Residencia De Salud Mental Nuestra Señora Del Carmen", - "Hospital El Tomillar", - "Hospital De Alta Resolución De Morón De La Frontera", - "Hospital La Merced", - "Hospital Universitario Virgen Del Rocío", - "Microbiología. Hospital Universitario Virgen del Rocio", - "Hospital Universitario Virgen Macarena", - "Hospital Universitario Virgen De Valme", - "Fremap, Hospital Y Centro De Rehabilitación De Sevilla", - "Hospital Psiquiátrico Penitenciario", - "Hospital San Juan De Dios Del Aljarafe", - "Hospital Nisa Sevilla-Aljarafe", - "Hospital De Alta Resolución De Utrera", - "Hospital De Alta Resolución Sierra Norte", - "Hospital Viamed Santa Ángela De La Cruz", - "Hospital De Alta Resolución De Écija", - "Clínica De Salud Mental Miguel De Mañara", - "Hospital De Rehabilitación Y Traumatología Virgen Del Rocío", - "Hospital De Alta Resolución De Lebrija", - "Hospital Infantil", - "Hospital De La Mujer", - "Hospital Virgen Del Mirón", - "Complejo Asistencial De Soria", - "Hospital Universitari Joan Xxiii De Tarragona", - "Hospital Sociosanitari Francolí", - "Hospital De Sant Pau I Santa Tecla", - "Hospital Viamed Monegal", - "Clínica Activa Mútua 2008", - "Hospital Comarcal Móra D'Ebre", - "Hospital Universitari De Sant Joan De Reus", - "Centre Mq Reus", - "Villablanca Serveis Assistencials, Sa", - "Institut Pere Mata, S.A", - "Hospital De Tortosa Verge De La Cinta", - "Clínica Terres De L'Ebre", - "Policlínica Comarcal Del Vendrell.", - "Pius Hospital De Valls", - "Residència Alt Camp", - "Centre Sociosanitari Ciutat De Reus", - "Hospital Comarcal D'Amposta", - "Centre Sociosanitari Llevant", - "Residència Vila-Seca", - "Unitat Polivalent En Salut Mental D'Amposta", - "Hospital Del Vendrell", - "Centre Sociosanitari I Residència Assistida Salou", - "Residència Santa Tecla Ponent", - "Unitat De Referència De Psiquiatria I Trastorns De La Conducta Alimentària (Urpi)", - "Hospital Obispo Polanco", - "Centro De Rehabilitacion Psicosocial San Juan De Dios", - "Hospital De Alcañiz", - "Hospital Virgen De La Salud", - "Hospital Geriátrico Virgen Del Valle", - "Hospital Nacional De Parapléjicos", - "Hospital Provincial Nuestra Señora De La Misericordia", - "Hospital General Nuestra Señora Del Prado", + "Comunitat Terapeutica Arenys De Munt", + "Concheiro Centro Medico Quirurgico", "Consejería de Sanidad", - "Clínica Marazuela, S.A.", - "Complejo Hospitalario De Toledo", - "Hospital Laboral Solimat Mutua Colaboradora Con La Ss Nº 72", - "Quirón Salud Toledo", - "Hospital Universitario Y Politécnico La Fe", - "Hospital Universitario Dr. Peset Aleixandre", - "Hospital Arnau De Vilanova", - "Hospital Clínico Universitario De Valencia", - "Hospital De La Malva-Rosa", "Consorcio Hospital General Universitario De Valencia", - "Hospital Católico Casa De Salud", - "Hospital Nisa Valencia Al Mar", - "Fundación Instituto Valenciano De Oncología", - "Hospital Virgen Del Consuelo", - "Hospital Quirón Valencia", - "Hospital Psiquiátrico Provincial", - "Casa De Reposo San Onofre", - "Hospital Francesc De Borja De Gandia", - "Hospital Lluís Alcanyís De Xàtiva", - "Hospital General De Ontinyent", - "Hospital Intermutual De Levante", - "Hospital De Sagunto", - "Hospital Doctor Moliner", - "Hospital General De Requena", - "Hospital 9 De Octubre", - "Centro Médico Gandia", - "Hospital Nisa Aguas Vivas", - "Clinica Fontana", - "Hospital Universitario De La Ribera", - "Hospital Pare Jofré", - "Hospital De Manises", - "Hospital De Crónicos De Mislata (Antiguo Hospital Militar De Valencia)", - "Hospital De Llíria", - "Imed Valencia", - "Unidad De Desintoxicación Hospitalaria", - "Hospital Universitario Rio Hortega", - "Hospital Clínico Universitario De Valladolid", - "Sanatorio Sagrado Corazón", - "Hospital Medina Del Campo", - "Hospital De Valladolid Felipe Ii", - "Hospital Campo Grande", - "Hospital Santa Marina", - "Hospital Intermutual De Euskadi", - "Clínica Ercilla Mutualia", - "Hospital Cruz Roja De Bilbao", - "Sanatorio Bilbaíno", - "Hospital De Basurto", - "Imq Clínica Virgen Blanca", - "Clínica Guimon S.A.", - "Clínica Indautxu", - "Hospital Universitario De Cruces", - "Osi Barakaldo-Sestao", - "Hospital San Eloy", - "Red De Salud Mental De Bizkaia (Hospital De Bermeo)", - "Hospital Galdakao-Usansolo", - "Hospital Gorliz", - "Red De Salud Mental De Bizkaia (Hospital De Zaldibar)", - "Red De Salud Mental De Bizkaia (Hospital De Zamudio)", - "Avances Médicos S.A", - "Hospital Quironsalud Bizkaia", - "Clínica Imq Zorrotzaurre", - "Hospital Urduliz Ospitalea", - "Hospital Virgen De La Concha", - "Hospital Provincial De Zamora", - "Hospital De Benavente", - "Complejo Asistencial De Zamora", - "Hospital Recoletas De Zamora", - "Hospital Clínico Universitario Lozano Blesa", - "Hospital Universitario Miguel Servet", - "Hospital Royo Villanova", - "Centro de Investigación Biomédica de Aragón", - "Centro De Rehabilitacion Psicosocial Nuestra Señora Del Pilar", - "Hospital Nuestra Señora De Gracia", - "Hospital Maz", - "Clínica Montpelier Grupo Hla, S.A.U", - "Centro Neuropsiquiátrico Nuestra Señora Del Carmen", - "Hospital Quironsalud Zaragoza", - "Clínica Nuestra Señora Del Pilar", - "Hospital General De La Defensa De Zaragoza", - "Hospital Ernest Lluch Martin", - "Unidad De Rehabilitacion De Larga Estancia", - "Unidad Rehabilitadora De Media Estancia Profesor Rey Ardid", - "Hospital De Rehabilitacion Psiquiatrica Prisma", - "Centro Sanitario Cinco Villas", - "Hospital Viamed Montecanal", - "Hospital Universitario De Ceuta", - "Hospital Comarcal de Melilla", - "Presidencia del Gobierno", - "Ministerio Sanidad" - ] - }, - "sequencing_institution": { - "enum": [ - "Instituto de Salud Carlos III", - "Red De Salud Mental De Araba (Hospital Psiquiátrico De Araba)", - "Hospital San José", - "Hospital Quirónsalud Vitoria", - "Hospital De Cuidados San Onofre, S.L. (Hospital De Cuidados San Onofre)", - "Hospital De Leza", - "Hospital Universitario De Araba (Sede Txagorritxu Y Sede Santiago)", - "Complejo Hospitalario Universitario De Albacete", - "Hospital General Universitario De Albacete", - "Clínica Santa Cristina Albacete", - "Hospital De Hellín", - "Quironsalud Hospital Albacete", - "Hospital Universitario Nuestra Señora Del Perpetuo Socorro", - "Hospital General De Almansa", - "Hospital General De Villarobledo", - "Centro De Atención A La Salud Mental La Milagrosa", - "Hospital General Universitario De Alicante", - "Clínica Vistahermosa Grupo Hla", - "Vithas Hospital Perpetuo Internacional", - "Hospital Virgen De Los Lirios", - "Sanatorio San Jorge S.L.", - "Hospital Clínica Benidorm", - "Hospital San Carlos De Denia Grupo Hla", - "Hospital General Universitario De Elche", - "Hospital General Universitario De Elda-Virgen De La Salud", - "Hospital Sant Vicent Del Raspeig", - "Sanatorio San Francisco De Borja Fontilles", - "Hospital Marina Baixa De La Vila Joiosa", - "Hospital Vega Baja De Orihuela", - "Hospital Internacional Medimar, S.A.", - "Hospital Psiquiátrico Penitenciario De Fontcalent", - "Hospital Universitario San Juan De Alicante", - "Centro Médico Acuario", - "Hospìtal Quironsalud Torrevieja", - "Hospital Imed Levante", - "Hospital Universitario De Torrevieja", - "Hospital De Denia", - "Hospital La Pedrera", - "Centro De Rehabilitación Neurológica Casaverde", - "Centro Militar de Veterinaria de la Defensa", + "Consorcio Hospitalario Provincial De Castellon", + "Consorcio LUCIA (SACYL,ITACYL UBU,UVa)", + "Cqm Clinic Maresme, Sl", + "Cti De La Corredoria", + "Eatica", + "Espitau Val D'Aran", + "Fraternidad Muprespa, Mutua Colaboradora Con La Seguridad Social Nº 275", + "Fremap Hospital Majadahonda", + "Fremap, Hospital De Barcelona", + "Fremap, Hospital De Vigo", + "Fremap_Hospital Y Centro De Rehabilitacion De Sevilla", + "Fundacio Hospital De L'Esperit Sant", + "Fundacio Hospital Sant Joan De Deu (Martorell)", + "Fundacio Puigvert - Iuna", + "Fundacio Sanitaria Sant Josep", + "Fundacio Sant Hospital.", + "Fundacion Cudeca. Centro De Cuidados Paliativos", + "Fundacion Hospital De Aviles", + "Fundacion Instituto San Jose", + "Fundacion Instituto Valenciano De Oncologia", + "Fundacion Sanatorio Adaro", + "Fundació Althaia-Manresa", + "Fundació Fisabio", + "Gerencia de Atención Primaria Pontevedra Sur", "Gerencia de Salud de Area de Soria", - "Hospital Universitario Vinalopo", - "Hospital Imed Elche", - "Hospital Torrecárdenas", - "Hospital De La Cruz Roja", - "Hospital Virgen Del Mar", - "Hospital La Inmaculada", - "Hospital Universitario Torrecárdenas", - "Hospital Mediterráneo", - "Hospital De Poniente", - "Hospital De Alta Resolución El Toyo", - "Hospital Nuestra Señora De Sonsoles", - "Hospital Provincial De Ávila", - "Clínica Santa Teresa", - "Complejo Asistencial De Avila", - "Hospital De Salud Mental Casta Salud Arévalo", - "Complejo Hospitalario Universitario De Badajoz", - "Hospital Universitario De Badajoz", - "Hospital Materno Infantil", - "Hospital Fundación San Juan De Dios De Extremadura", - "Hospital Don Benito-Villanueva De La Serena", - "Hospital General De Llerena", - "Hospital De Mérida", - "Centro Sociosanitario De Mérida", - "Hospital Quirónsalud Santa Justa", - "Hospital Quironsalud Clideba", - "Hospital Parque Via De La Plata", - "Hospital De Zafra", - "Complejo Hospitalario Llerena-Zafra", - "Hospital Perpetuo Socorro", - "Hospital Siberia-Serena", - "Hospital Tierra De Barros", - "Complejo H. Don Benito-Vva De La Serena", - "Complejo Hospitalario Del Área De Salud De Mérida", - "Casaverde. Centro De Rehabilitación Neurológico De Extremadura", - "Clínica Extremeña De Salud", - "Hospital Parque Vegas Altas", - "Hospital General De Mallorca", - "Hospital Psiquiàtric", - "Clínica Mutua Balear", - "Hospital De La Cruz Roja Española", - "Hospital Sant Joan De Deu", - "Clínica Rotger", - "Clinica Juaneda", - "Policlínica Miramar", - "Hospital Joan March", + "Germanes Hospitalaries. Hospital Sagrat Cor", + "Grupo Quironsalud Pontevedra", + "Hc Marbella International Hospital", + "Helicopteros Sanitarios Hospital", + "Hestia Balaguer.", + "Hestia Duran I Reynals", + "Hestia Gracia", + "Hestia La Robleda", + "Hestia Palau.", + "Hestia San Jose", + "Hm El Pilar", + "Hm Galvez", + "Hm Hospitales 1.989, S.A.", + "Hm Malaga", + "Hm Modelo-Belen", + "Hm Nou Delfos", + "Hm Regla", + "Hospital 9 De Octubre", + "Hospital Aita Menni", + "Hospital Alto Guadalquivir", + "Hospital Arnau De Vilanova", + "Hospital Asepeyo Madrid", + "Hospital Asilo De La Real Piedad De Cehegin", + "Hospital Asociado Universitario Guadarrama", + "Hospital Asociado Universitario Virgen De La Poveda", + "Hospital Beata Maria Ana", + "Hospital Begoña", + "Hospital Bidasoa (Osi Bidasoa)", + "Hospital C. M. Virgen De La Caridad Cartagena", + "Hospital Campo Arañuelo", "Hospital Can Misses", - "Hospital Residencia Asistida Cas Serres", - "Policlínica Nuestra Señora Del Rosario, S.A.", - "Clínica Juaneda Menorca", - "Hospital General De Muro", - "Clinica Juaneda Mahon", - "Hospital Manacor", - "Hospital Son Llatzer", - "Hospital Quirónsalud Palmaplanas", + "Hospital Carlos Iii", + "Hospital Carmen Y Severo Ochoa", + "Hospital Casaverde Valladolid", + "Hospital Catolico Casa De Salud", + "Hospital Central De La Cruz Roja, San Jose Y Santa Adela", + "Hospital Central De La Defensa Gomez Ulla", + "Hospital Centro De Andalucia", + "Hospital Centro De Cuidados Laguna", + "Hospital Centro Medico Virgen De La Caridad Caravaca", + "Hospital Ciudad De Coria", + "Hospital Ciudad De Telde", + "Hospital Civil", + "Hospital Clinic De Barcelona", + "Hospital Clinic De Barcelona, Seu Plato", + "Hospital Clinic De Barcelona, Seu Sabino De Arana", + "Hospital Clinica Benidorm", + "Hospital Clinico Universitario De Valencia", + "Hospital Clinico Universitario De Valladolid", + "Hospital Clinico Universitario Lozano Blesa", + "Hospital Clinico Universitario Virgen De La Arrixaca", + "Hospital Comarcal", + "Hospital Comarcal D'Amposta", + "Hospital Comarcal De Blanes", + "Hospital Comarcal De L'Alt Penedes", + "Hospital Comarcal De Laredo", + "Hospital Comarcal De Vinaros", + "Hospital Comarcal Del Noroeste", + "Hospital Comarcal Del Pallars", + "Hospital Comarcal D´Inca", + "Hospital Comarcal Mora D'Ebre", + "Hospital Comarcal Sant Jaume De Calella", + "Hospital Cruz Roja De Bilbao - Victoria Eugenia", + "Hospital Cruz Roja De Cordoba", + "Hospital Cruz Roja Gijon", + "Hospital D'Igualada", + "Hospital D'Olot I Comarcal De La Garrotxa", + "Hospital De Alcañiz", + "Hospital De Alta Resolucion De Alcala La Real", + "Hospital De Alta Resolucion De Alcaudete", + "Hospital De Alta Resolucion De Benalmadena", + "Hospital De Alta Resolucion De Ecija", + "Hospital De Alta Resolucion De Especialidades De La Janda", + "Hospital De Alta Resolucion De Estepona", + "Hospital De Alta Resolucion De Guadix", + "Hospital De Alta Resolucion De Lebrija", + "Hospital De Alta Resolucion De Loja", + "Hospital De Alta Resolucion De Moron De La Frontera", + "Hospital De Alta Resolucion De Puente Genil", + "Hospital De Alta Resolucion De Utrera", + "Hospital De Alta Resolucion Eltoyo", + "Hospital De Alta Resolucion Sierra De Segura", + "Hospital De Alta Resolucion Sierra Norte", + "Hospital De Alta Resolucion Valle Del Guadiato", + "Hospital De Antequera", + "Hospital De Barbastro", + "Hospital De Barcelona", + "Hospital De Baza", + "Hospital De Benavente Complejo Asistencial De Zamora", + "Hospital De Berga", + "Hospital De Bermeo", + "Hospital De Calahorra", + "Hospital De Campdevanol", + "Hospital De Cantoblanco", + "Hospital De Cerdanya / Hopital De Cerdagne", + "Hospital De Cronicos De Mislata (Antiguo Hospital Militar De Valencia)", + "Hospital De Cuidados Medios Villademar", + "Hospital De Denia", + "Hospital De Emergencia Covid 19", + "Hospital De Figueres", "Hospital De Formentera", - "Hospital Comarcal D'Inca", - "Hospital Mateu Orfila", - "Hospital Universitari Son Espases", - "Servicio de Microbiologia HU Son Espases", - "Hospital De Llevant", - "Hospital Clinic Balear", - "Clínica Luz De Palma", - "Hospital Clínic De Barcelona, Seu Sabino De Arana", - "Hospital Del Mar", - "Hospital De L'Esperança", - "Hospital Clínic De Barcelona", - "Hospital Fremap Barcelona", - "Centre De Prevenció I Rehabilitació Asepeyo", - "Clínica Mc Copèrnic", - "Clínica Mc Londres", - "Hospital Egarsat Sant Honorat", - "Hospital Dos De Maig", - "Hospital El Pilar", - "Hospital Sant Rafael", - "Clínica Nostra Senyora Del Remei", - "Clínica Sagrada Família", - "Hospital Mare De Déu De La Mercè", - "Clínica Solarium", + "Hospital De Gorliz", + "Hospital De Hellin", + "Hospital De Jaca Salud", + "Hospital De Jarrio", + "Hospital De Jove", + "Hospital De L'Esperança.", + "Hospital De La Axarquia", + "Hospital De La Creu Roja Espanyola", + "Hospital De La Fuenfria", + "Hospital De La Inmaculada Concepcion", + "Hospital De La Malva-Rosa", + "Hospital De La Mujer", + "Hospital De La Reina", + "Hospital De La Rioja", + "Hospital De La Santa Creu", "Hospital De La Santa Creu I Sant Pau", - "Nou Hospital Evangèlic", - "Hospital De Nens De Barcelona", - "Institut Guttmann", - "Fundació Puigvert - Iuna", - "Hestia Palau.", - "Hospital Universitari Sagrat Cor", - "Clínica Corachan", - "Clínica Tres Torres", - "Hospital Quirónsalud Barcelona", - "Centre Mèdic Delfos", - "Centre Mèdic Sant Jordi De Sant Andreu", - "Hospital Plató", - "Hospital Universitari Quirón Dexeus", - "Centro Médico Teknon, Grupo Quironsalud", - "Hospital De Barcelona", - "Centre Hospitalari Policlínica Barcelona", - "Centre D'Oftalmologia Barraquer", - "Hestia Duran I Reynals", - "Serveis Clínics, S.A.", - "Clínica Coroleu - Ssr Hestia.", - "Clínica Planas", - "Hospital Universitari Germans Trias I Pujol De Badalona", - "Hospital Municipal De Badalona", - "Centre Sociosanitari El Carme", - "Hospital Comarcal De Sant Bernabé", - "Hospital Comarcal Sant Jaume De Calella", - "Hospital De Sant Joan De Déu.", - "Clínica Nostra Senyora De Guadalupe", - "Hospital General De Granollers.", - "Hospital Universitari De Bellvitge", - "Hospital General De L'Hospitalet", - "Lab Clínic ICS Camp de Tarragona-Terres de l'Ebre. Hospital Joan XXIII", - "LABORATORI DE REFERENCIA DE CATALUNYA", - "Banc de Sang i Teixits Catalunya", - "Laboratorio Echevarne, SA Sant Cugat del Vallès", - "Fundació Sanitària Sant Josep", - "Hospital De Sant Jaume", - "Clínica Sant Josep", - "Centre Hospitalari.", - "Fundació Althaia-Manresa", - "Hospital De Sant Joan De Déu (Manresa)", - "Hospital De Sant Andreu", - "Germanes Hospitalàries. Hospital Sagrat Cor", - "Fundació Hospital Sant Joan De Déu", - "Centre Mèdic Molins, Sl", + "Hospital De La Serrania", + "Hospital De La V.O.T. De San Francisco De Asis", + "Hospital De La Vega Lorenzo Guirao", + "Hospital De Leon Complejo Asistencial Universitario De Leon", + "Hospital De Leza", + "Hospital De Llevant", + "Hospital De Lliria", + "Hospital De Luarca", + "Hospital De Manacor", + "Hospital De Manises", + "Hospital De Mataro", + "Hospital De Mendaro (Osi Bajo Deba)", + "Hospital De Merida", "Hospital De Mollet", + "Hospital De Montilla", + "Hospital De Neurotraumatologia Y Rehabilitacion Del H.U. Virgen De Las Nieves", + "Hospital De Ofra", + "Hospital De Palamos", + "Hospital De Rehabilitacion Psiquiatrica Prisma", + "Hospital De Rehabilitacion Y Traumatologia Del H.U. Virgen Del Rocio", + "Hospital De Riotinto", "Hospital De Sabadell", - "Benito Menni,Complex Assistencial En Salut Mental.", - "Parc Sanitari Sant Joan De Déu - Recinte Sant Boi.", - "Parc Sanitari Sant Joan De Déu - Hospital General", + "Hospital De Sagunto", + "Hospital De Salud Mental Casta Salud Arevalo", + "Hospital De Salud Mental Provincial", + "Hospital De San Antonio", + "Hospital De San Jose", + "Hospital De San Rafael", + "Hospital De Sant Andreu", "Hospital De Sant Celoni.", - "Hospital Universitari General De Catalunya", - "Casal De Curació", - "Hospital Residència Sant Camil - Consorci Sanitari Del Garraf.", - "Centres Assistencials Dr. Emili Mira I López (Recinte Torribera).", - "Fundació Hospital De L'Esperit Sant", + "Hospital De Sant Jaume", + "Hospital De Sant Joan De Deu (Manresa)", + "Hospital De Sant Joan De Deu.", + "Hospital De Sant Joan Despi Moises Broggi", + "Hospital De Sant Llatzer", + "Hospital De Sant Pau I Santa Tecla", "Hospital De Terrassa.", - "Hospital De Sant Llàtzer", - "Hospital Universitari Mútua De Terrassa", - "Hospital Universitari De Vic", - "Hospital De La Santa Creu", + "Hospital De Tortosa Verge De La Cinta", "Hospital De Viladecans", - "Hospital Sant Antoni Abat - Consorci Sanitari Del Garraf.", - "Centre Sociosanitari Can Torras", - "Hestia Maresme", - "Prytanis Sant Boi Centre Sociosanitari", - "Centre Sociosanitari Verge Del Puig", - "Residència L'Estada", - "Residència Puig-Reig", - "Residència Santa Susanna", - "Hospital De Mataró", - "Hospital Universitari Vall D'Hebron", - "Centre Polivalent Can Fosc", - "Hospital Sociosanitari Mutuam Güell", - "Mútua De Granollers, Mútua De Previsió Social A Prima Fixa", - "Hospital Comarcal De L'Alt Penedès.", - "Àptima Centre Clínic - Mútua De Terrassa", - "Institut Català D'Oncologia - Hospital Duran I Reynals", - "Sar Mont Martí", - "Regina Sar", - "Centre Vallparadís", + "Hospital De Zafra", + "Hospital De Zaldibar", + "Hospital De Zamudio", + "Hospital De Zumarraga (Osi Goierri - Alto Urola)", + "Hospital Del Mar", + "Hospital Del Norte", + "Hospital Del Oriente De Asturias Francisco Grande Covian", + "Hospital Del Sur", + "Hospital Del Vendrell", + "Hospital Doctor Moliner", + "Hospital Doctor Oloriz", + "Hospital Doctor Sagaz", + "Hospital Don Benito-Villanueva De La Serena", + "Hospital Dos De Maig", + "Hospital Egarsat Sant Honorat", + "Hospital El Angel", + "Hospital El Bierzo", + "Hospital El Escorial", + "Hospital El Pilar", + "Hospital El Tomillar", + "Hospital Ernest Lluch Martin", + "Hospital Fatima", + "Hospital Francesc De Borja De Gandia", + "Hospital Fuensanta", + "Hospital Fuente Bermeja- Complejo Asistencial Universitario De Burgos-", + "Hospital G. Universitario J.M. Morales Meseguer", + "Hospital Galdakao-Usansolo Asociado A La Upv/Ehu", + "Hospital Garcia Orcoyen", + "Hospital General De Almansa", + "Hospital General De Fuerteventura", + "Hospital General De Granollers.", + "Hospital General De L'Hospitalet", + "Hospital General De La Defensa En Zaragoza", + "Hospital General De La Santisima Trinidad", + "Hospital General De Llerena", + "Hospital General De Mallorca", + "Hospital General De Ontinyent", + "Hospital General De Requena", + "Hospital General De Segovia Complejo Asistencial De Segovia", + "Hospital General De Tomelloso", + "Hospital General De Valdepeñas", + "Hospital General De Villalba", + "Hospital General De Villarrobledo", + "Hospital General La Mancha Centro", + "Hospital General Nuestra Señora Del Prado", + "Hospital General Penitenciari", + "Hospital General Santa Maria Del Puerto", + "Hospital General Universitario De Albacete", + "Hospital General Universitario De Castellon", + "Hospital General Universitario De Ciudad Real", + "Hospital General Universitario De Elche", + "Hospital General Universitario De Elda-Virgen De La Salud", + "Hospital General Universitario Dr. Balmis", + "Hospital General Universitario Gregorio Marañon", + "Hospital General Universitario Los Arcos Del Mar Menor", + "Hospital General Universitario Reina Sofia", + "Hospital General Universitario Santa Lucia", + "Hospital Geriatrico Virgen Del Valle", + "Hospital Gijon", + "Hospital Hernan Cortes Miraflores", + "Hospital Hestia Madrid", + "Hospital Hla Universitario Moncloa", + "Hospital Hm Nuevo Belen", + "Hospital Hm Rosaleda-Hm La Esperanza", + "Hospital Hm San Francisco", + "Hospital Hm Valles", + "Hospital Ibermutuamur - Patologia Laboral", + "Hospital Imed Elche", + "Hospital Imed Gandia", + "Hospital Imed Levante", + "Hospital Imed San Jorge", + "Hospital Infanta Elena", + "Hospital Infanta Margarita", + "Hospital Infantil", + "Hospital Infantil Universitario Niño Jesus", + "Hospital Insular De Lanzarote", + "Hospital Insular Nuestra Señora De Los Reyes", + "Hospital Intermutual De Euskadi", + "Hospital Intermutual De Levante", + "Hospital Internacional Hcb Denia", + "Hospital Internacional Hm Santa Elena", + "Hospital Jaume Nadal Meroles", + "Hospital Jerez Puerta Del Sur", + "Hospital Joan March", + "Hospital Juaneda Muro", + "Hospital La Antigua", + "Hospital La Inmaculada", + "Hospital La Magdalena", + "Hospital La Merced", + "Hospital La Milagrosa S.A.", + "Hospital La Paloma", + "Hospital La Pedrera", + "Hospital La Vega Grupo Hla", + "Hospital Latorre", + "Hospital Lluis Alcanyis De Xativa", + "Hospital Los Madroños", + "Hospital Los Montalvos (Complejo Asistencial Universitario De Salamanca)", + "Hospital Los Morales", + "Hospital Mare De Deu De La Merce", + "Hospital Marina Baixa De La Vila Joiosa", + "Hospital Maritimo De Torremolinos", + "Hospital Materno - Infantil Del H.U. Reina Sofia", + "Hospital Materno Infantil", + "Hospital Materno Infantil Del H.U.R. De Malaga", + "Hospital Materno-Infantil", + "Hospital Materno-Infantil Del H.U. De Jaen", + "Hospital Materno-Infantil Del H.U. Virgen De Las Nieves", + "Hospital Mateu Orfila", + "Hospital Maz", + "Hospital Md Anderson Cancer Center Madrid", + "Hospital Medimar Internacional", + "Hospital Medina Del Campo", + "Hospital Mediterraneo", + "Hospital Mesa Del Castillo", + "Hospital Metropolitano De Jaen", + "Hospital Mompia", + "Hospital Monte Naranco", + "Hospital Monte San Isidro Complejo Asistencial Universitario De Leon", + "Hospital Municipal De Badalona", + "Hospital Mutua Montañesa", + "Hospital Nacional De Paraplejicos", + "Hospital Neurotraumatologico Del H.U. De Jaen", + "Hospital Nisa Aguas Vivas", + "Hospital Ntra. Sra. Del Perpetuo Socorro", + "Hospital Nuestra Señora De America", + "Hospital Nuestra Señora De Gracia", + "Hospital Nuestra Señora De Guadalupe", + "Hospital Nuestra Señora De La Salud Hla Sl", + "Hospital Nuestra Señora De Sonsoles", + "Hospital Obispo Polanco", + "Hospital Ochoa", + "Hospital Palma Del Rio", + "Hospital Pardo De Aravaca", + "Hospital Pare Jofre", + "Hospital Parque", + "Hospital Parque Fuerteventura", + "Hospital Parque Marazuela", + "Hospital Parque San Francisco", + "Hospital Parque Vegas Altas", + "Hospital Perpetuo Socorro", + "Hospital Perpetuo Socorro Alameda", + "Hospital Polivalente Anexo Juan Carlos I", + "Hospital Provincial", + "Hospital Provincial De Avila", + "Hospital Provincial De Zamora Complejo Asistencial De Zamora", + "Hospital Provincial Ntra.Sra.De La Misericordia", + "Hospital Psiquiatric", + "Hospital Psiquiatrico Doctor Rodriguez Lafora", + "Hospital Psiquiatrico Penitenciario", + "Hospital Psiquiatrico Penitenciario De Fontcalent", + "Hospital Psiquiatrico Roman Alberca", + "Hospital Psiquiatrico San Francisco De Asis", + "Hospital Psiquiatrico San Juan De Dios", + "Hospital Psiquiatrico San Luis", + "Hospital Publico Da Barbanza", + "Hospital Publico Da Mariña", + "Hospital Publico De Monforte", + "Hospital Publico De Valdeorras", + "Hospital Publico De Verin", + "Hospital Publico Do Salnes", + "Hospital Publico Virxe Da Xunqueira", + "Hospital Puerta De Andalucia", + "Hospital Punta De Europa", + "Hospital Quiron Campo De Gibraltar", + "Hospital Quiron Salud Costa Adeje", + "Hospital Quiron Salud Del Valles - Clinica Del Valles", + "Hospital Quiron Salud Lugo", + "Hospital Quiron Salud Tenerife", + "Hospital Quiron Salud Valle Del Henares", + "Hospital Quironsalud A Coruña", + "Hospital Quironsalud Albacete", + "Hospital Quironsalud Barcelona", + "Hospital Quironsalud Bizkaia", + "Hospital Quironsalud Caceres", + "Hospital Quironsalud Ciudad Real", + "Hospital Quironsalud Clideba", + "Hospital Quironsalud Cordoba", + "Hospital Quironsalud Huelva", + "Hospital Quironsalud Infanta Luisa", + "Hospital Quironsalud Malaga", + "Hospital Quironsalud Marbella", + "Hospital Quironsalud Murcia", + "Hospital Quironsalud Palmaplanas", + "Hospital Quironsalud Sagrado Corazon", + "Hospital Quironsalud San Jose", + "Hospital Quironsalud Santa Cristina", + "Hospital Quironsalud Son Veri", + "Hospital Quironsalud Sur", + "Hospital Quironsalud Toledo", + "Hospital Quironsalud Torrevieja", + "Hospital Quironsalud Valencia", + "Hospital Quironsalud Vida", + "Hospital Quironsalud Vitoria", + "Hospital Quironsalud Zaragoza", + "Hospital Rafael Mendez", + "Hospital Recoletas Cuenca, S.L.U.", + "Hospital Recoletas De Burgos", + "Hospital Recoletas De Palencia", + "Hospital Recoletas De Zamora", + "Hospital Recoletas Marbella Slu", + "Hospital Recoletas Salud Campo Grande", + "Hospital Recoletas Salud Felipe Ii", + "Hospital Recoletas Segovia Nuestra Señora De La Misericordia", + "Hospital Reina Sofia", + "Hospital Residencia Sant Camil - Consorci Sanitari De L'Alt Penedes I Garraf", + "Hospital Ribera Almendralejo", + "Hospital Ribera Badajoz", + "Hospital Ribera Covadonga", + "Hospital Ribera Juan Cardona", + "Hospital Ribera Polusa", + "Hospital Ribera Povisa", + "Hospital Ricardo Bermingham", + "Hospital Rio Carrion Complejo Asistencial Universitario De Palencia", + "Hospital Royo Villanova", + "Hospital Ruber Internacional", + "Hospital Ruber Juan Bravo", + "Hospital Sagrado Corazon De Jesus", + "Hospital San Agustin", + "Hospital San Camilo", + "Hospital San Carlos De Denia Grupo Hla", + "Hospital San Carlos De San Fernando", + "Hospital San Eloy", + "Hospital San Francisco De Asis", + "Hospital San Jose", + "Hospital San Jose Solimat", + "Hospital San Juan De Dios", + "Hospital San Juan De Dios Burgos", + "Hospital San Juan De Dios De Cordoba", + "Hospital San Juan De Dios De Sevilla", + "Hospital San Juan De Dios Del Aljarafe", + "Hospital San Juan De Dios Donostia", + "Hospital San Juan De Dios Leon", + "Hospital San Juan De Dios Tenerife", + "Hospital San Juan De La Cruz", + "Hospital San Juan Grande", + "Hospital San Lazaro", + "Hospital San Pedro De Alcantara", + "Hospital San Rafael", + "Hospital San Roque De Guia", + "Hospital San Telmo ,Complejo Asistencial Universitario De Palencia", + "Hospital Sanitas Cima", + "Hospital Sant Antoni Abat - Consorci Sanitari Del Garraf.", + "Hospital Sant Joan De Deu", + "Hospital Sant Joan De Deu Inca", + "Hospital Sant Joan De Deu Lleida", + "Hospital Sant Vicent Del Raspeig", + "Hospital Santa Ana", + "Hospital Santa Barbara", + "Hospital Santa Barbara ,Complejo Asistencial De Soria", + "Hospital Santa Caterina-Ias", + "Hospital Santa Clotilde", + "Hospital Santa Isabel Complejo Asistencial Universitario De Leon", + "Hospital Santa Maria", + "Hospital Santa Maria Del Rosell", + "Hospital Santa Marina", + "Hospital Santa Teresa", + "Hospital Santiago Apostol", + "Hospital Santos Reyes", + "Hospital Siberia-Serena", + "Hospital Sierrallana", + "Hospital Sociosanitari De Lloret De Mar", + "Hospital Sociosanitari De Mollet", + "Hospital Sociosanitari Francoli", + "Hospital Sociosanitari Mutuam Girona", + "Hospital Sociosanitari Mutuam Guell", + "Hospital Sociosanitari Pere Virgili", + "Hospital Son Llatzer", + "Hospital Tierra De Barros", + "Hospital Universitari Arnau De Vilanova De Lleida", + "Hospital Universitari De Bellvitge", + "Hospital Universitari De Girona Dr. Josep Trueta", + "Hospital Universitari De Sant Joan De Reus", + "Hospital Universitari De Vic", + "Hospital Universitari General De Catalunya", + "Hospital Universitari Germans Trias I Pujol De Badalona", + "Hospital Universitari Joan Xxiii De Tarragona", + "Hospital Universitari Mutua De Terrassa", + "Hospital Universitari Quir¿N Dexeus", + "Hospital Universitari Sagrat Cor", + "Hospital Universitari Son Espases", + "Hospital Universitari Vall D'Hebron", + "Hospital Universitario 12 De Octubre", + "Hospital Universitario Araba (Sede Txagorritxu Y Sede Santiago)", + "Hospital Universitario Basurto", + "Hospital Universitario Central De Asturias", + "Hospital Universitario Clinico San Carlos", + "Hospital Universitario Clinico San Cecilio", + "Hospital Universitario Costa Del Sol", + "Hospital Universitario Cruces", + "Hospital Universitario De Badajoz", + "Hospital Universitario De Burgos Complejo Asistencial Univer. De Burgos", + "Hospital Universitario De Cabueñes", + "Hospital Universitario De Caceres", + "Hospital Universitario De Canarias", + "Hospital Universitario De Ceuta", + "Hospital Universitario De Fuenlabrada", + "Hospital Universitario De Getafe", + "Hospital Universitario De Gran Canaria Dr. Negrin", + "Hospital Universitario De Guadalajara", + "Hospital Universitario De Jaen", + "Hospital Universitario De Jerez De La Frontera", + "Hospital Universitario De La Linea De La Concepcion", + "Hospital Universitario De La Plana", + "Hospital Universitario De La Princesa", + "Hospital Universitario De La Ribera", + "Hospital Universitario De Mostoles", + "Hospital Universitario De Navarra", + "Hospital Universitario De Poniente", + "Hospital Universitario De Puerto Real", + "Hospital Universitario De Salamanca ,Complejo Asistencial Universitario De", + "Hospital Universitario De Salud Mental Juan Carlos I", + "Hospital Universitario De Toledo (Hut)", + "Hospital Universitario De Torrejon", + "Hospital Universitario De Torrevieja", + "Hospital Universitario Del Henares", + "Hospital Universitario Del Sureste", + "Hospital Universitario Del Tajo", + "Hospital Universitario Donostia", + "Hospital Universitario Dr. Jose Molina Orosa", + "Hospital Universitario Dr. Peset Aleixandre", + "Hospital Universitario Fundacion Alcorcon", + "Hospital Universitario Fundacion Jimenez Diaz", + "Hospital Universitario General De La Palma", + "Hospital Universitario Hm Madrid", + "Hospital Universitario Hm Monteprincipe", + "Hospital Universitario Hm Puerta Del Sur", + "Hospital Universitario Hm Sanchinarro", + "Hospital Universitario Hm Torrelodones", + "Hospital Universitario Hospiten Bellevue", + "Hospital Universitario Hospiten Rambla", + "Hospital Universitario Hospiten Sur", + "Hospital Universitario Infanta Cristina", + "Hospital Universitario Infanta Elena", + "Hospital Universitario Infanta Leonor", + "Hospital Universitario Infanta Sofia", + "Hospital Universitario Jose Germain", + "Hospital Universitario Juan Ramon Jimenez", + "Hospital Universitario La Moraleja", + "Hospital Universitario La Paz", + "Hospital Universitario La Zarzuela", + "Hospital Universitario Lucus Augusti", + "Hospital Universitario Marques De Valdecilla", + "Hospital Universitario Miguel Servet", + "Hospital Universitario Nuestra Señora De Candelaria", + "Hospital Universitario Nuestra Señora Del Perpetuo Socorro", + "Hospital Universitario Principe De Asturias", + "Hospital Universitario Puerta De Hierro Majadahonda", + "Hospital Universitario Puerta Del Mar", + "Hospital Universitario Quironsalud Madrid", + "Hospital Universitario Ramon Y Cajal", + "Hospital Universitario Regional De Malaga", + "Hospital Universitario Reina Sofia", + "Hospital Universitario Rio Hortega", + "Hospital Universitario San Agustin", + "Hospital Universitario San Jorge", + "Hospital Universitario San Juan De Alicante", + "Hospital Universitario San Pedro", + "Hospital Universitario San Roque Las Palmas", + "Hospital Universitario San Roque Maspalomas", + "Hospital Universitario Santa Cristina", + "Hospital Universitario Severo Ochoa", + "Hospital Universitario Torrecardenas", + "Hospital Universitario Vinalopo", + "Hospital Universitario Virgen De La Victoria", + "Hospital Universitario Virgen De Las Nieves", + "Hospital Universitario Virgen De Valme", + "Hospital Universitario Virgen Del Rocio", + "Hospital Universitario Virgen Macarena", + "Hospital Universitario Vithas Las Palmas", + "Hospital Universitario Y Politecnico La Fe", + "Hospital Urduliz Ospitalea", + "Hospital Valle De Guadalhorce De Cartama", + "Hospital Valle De Laciana", + "Hospital Valle De Los Pedroches", + "Hospital Valle Del Nalon", + "Hospital Vazquez Diaz", + "Hospital Vega Baja De Orihuela", + "Hospital Viamed Bahia De Cadiz", + "Hospital Viamed Montecanal", + "Hospital Viamed Novo Sancti Petri", + "Hospital Viamed San Jose", + "Hospital Viamed Santa Angela De La Cruz", + "Hospital Viamed Santa Elena, S.L", + "Hospital Viamed Santiago", + "Hospital Viamed Tarragona", + "Hospital Victoria Eugenia De La Cruz Roja Española", + "Hospital Virgen De Altagracia", + "Hospital Virgen De La Bella", + "Hospital Virgen De La Concha Complejo Asistencial De Zamora", + "Hospital Virgen De La Luz", + "Hospital Virgen De La Torre", + "Hospital Virgen De Las Montañas", + "Hospital Virgen De Los Lirios", + "Hospital Virgen Del Alcazar De Lorca", + "Hospital Virgen Del Camino", + "Hospital Virgen Del Castillo", + "Hospital Virgen Del Mar", + "Hospital Virgen Del Miron ,Complejo Asistencial De Soria", + "Hospital Virgen Del Puerto", + "Hospital Vital Alvarez Buylla", + "Hospital Vithas Castellon", + "Hospital Vithas Granada", + "Hospital Vithas Parque San Antonio", + "Hospital Vithas Sevilla", + "Hospital Vithas Valencia Consuelo", + "Hospital Vithas Vitoria", + "Hospital Vithas Xanit Estepona", + "Hospital Vithas Xanit Internacional", + "Hospiten Clinica Roca San Agustin", + "Hospiten Lanzarote", + "Idcsalud Mostoles Sa", + "Imed Valencia", + "Institut Catala D'Oncologia - Hospital Duran I Reynals", + "Institut Catala D'Oncologia - Hospital Germans Trias I Pujol", + "Institut Catala D'Oncologia Girona - Hospital Josep Trueta", + "Institut Guttmann", + "Institut Pere Mata, S.A", + "Instituto De Enfermedades Neurologicas De Castilla-La Mancha", + "Instituto De Salud Carlos Iii - Centro Nacional De Microbiologia", + "Instituto De Traumatologia De Union De Mutuas (Matepss Nº 267)", + "Instituto Oftalmologico Fernandez-Vega", + "Instituto Provincial De Rehabilitacion", + "Instituto Tecnológico y de Energías Renovables, S.A. (ITER, S.A.)", + "Ita Canet", + "Ita Clinic Bcn", + "Ita Godella", "Ita Maresme", - "Clínica Llúria", - "Antic Hospital De Sant Jaume I Santa Magdalena", - "Parc Sanitari Sant Joan De Déu - Numància", + "Ivan Mañero Clinic", + "Juaneda Miramar", + "Lab Clínic ICS Camp de Tarragona-Terres de l'Ebre. Hospital Joan XXIII", + "Laboratori De Referencia De Catalunya", + "Laboratorio Echevarne, Sa", + "Lepant Residencial Qgg, Sl", + "Microbiología HUC San Cecilio", + "Microbiología. Hospital Universitario Virgen del Rocio", + "Ministerio Sanidad", + "Mutua Balear", + "Mutua De Granollers, Mutua De Previsio Social A Prima Fixa", + "Mutualia Clinica Pakea", + "Nou Hospital Evangelic", + "Organizacion Sanitaria Integrada Debagoiena", + "Parc Sanitari Sant Joan De Deu - Numancia", + "Parc Sanitari Sant Joan De Deu - Recinte Sant Boi.", + "Parc Sanitari Sant Joan De Deu - Til·Lers", + "Parc Sanitari Sant Joan De Deu - Uhpp - 1", + "Parc Sanitari Sant Joan De Deu - Uhpp - 2", + "Pius Hospital De Valls", + "Plataforma de Genómica y Bioinformática", + "Plataforma de Medicina Computacional, Fundación Progreso y Salud", + "Policlinica Comarcal Del Vendrell.", + "Policlinica Gipuzkoa", + "Policlinica Nuestra Sra. Del Rosario", + "Policlinico Riojano Nuestra Señora De Valvanera", + "Presidencia del Gobierno", "Prytanis Hospitalet Centre Sociosanitari", - "Comunitat Terapèutica Arenys De Munt", - "Hospital Sociosanitari Pere Virgili", + "Prytanis Sant Boi Centre Sociosanitari", + "Quinta Medica De Reposo", + "Red De Salud Mental De Araba (Hospital Psiquiatrico De Araba)", + "Residencia Alt Camp", + "Residencia De Gent Gran Puig D'En Roca", + "Residencia De Salud Mental Nuestra Se?Ora Del Carmen", + "Residencia Geriatrica Maria Gay", + "Residencia L'Estada", + "Residencia Puig-Reig", + "Residencia Santa Susanna", + "Residencia Santa Tecla Ponent", + "Residencia Terraferma", + "Residencia Vila-Seca", + "Ribera Hospital De Molina", + "Ronda De Dalt, Centre Sociosanitari", + "Sanatorio Bilbaino", + "Sanatorio Dr. Muñoz", + "Sanatorio Esquerdo, S.A.", + "Sanatorio Nuestra Señora Del Rosario", + "Sanatorio Sagrado Corazon", + "Sanatorio San Francisco De Borja Fontilles", + "Sanatorio Usurbil, S. L.", + "Santo Y Real Hospital De Caridad", + "Sar Mont Marti", + "Serveis Clinics, S.A.", + "Servicio Madrileño De Salud", + "Servicio de Microbiologia HU Son Espases", + "Servicios Sanitarios Y Asistenciales", + "U.R.R. De Enfermos Psiquicos Alcohete", + "Unidad De Rehabilitacion De Larga Estancia", + "Unidad Rehabilitadora De Media Estancia Profesor Rey Ardid", + "Unidades Clinicas Y De Rehabilitacion De Salud Mental", + "Unitat Polivalent Benito Menni En Salut Mental De L'Hospitalet-El Prat De Llobregat", + "Unitat Polivalent En Salut Mental D'Amposta", + "Unitat Polivalent Salut Mental Barcelona-Nord", + "Unitat Terapeutica-Educativa Acompanya'M", + "Villablanca Serveis Assistencials, Sa", + "Vithas Hospital Montserrat", + "Vithas Hospital Nosa Señora De Fatima", + "Vithas Hospital Perpetuo Internacional", + "Vithas Hospital Santa Cruz" + ] + }, + "sequencing_institution": { + "enum": [ + "Adinfa, Sociedad Cooperativa Andaluza", + "Alm Univass S.L.", + "Antic Hospital De Sant Jaume I Santa Magdalena", + "Aptima Centre Clinic - Mutua De Terrassa", + "Area Psiquiatrica San Juan De Dios", + "Avances Medicos S.A.", + "Avantmedic", + "Banc de Sang i Teixits Catalunya", "Benito Menni Complex Assistencial En Salut Mental", - "Hospital Sanitas Cima", - "Parc Sanitari Sant Joan De Deu - Brians 1.", - "Institut Català D'Oncologia - Hospital Germans Trias I Pujol", - "CAP La Salut EAP Badalona", - "CAP Mataró-6 (Gatassa)", - "CAP Can Mariner Santa Coloma-1", - "CAP Montmeló (Montornès)", + "Benito Menni, Complex Assistencial En Salut Mental", + "Cap La Salut", + "Cap Mataro Centre", + "Cap Montmelo", + "Cap Montornes", + "Casal De Curacio", + "Casaverde Centro De Rehabilitacion Neurologico De Extremadura S.L.", + "Casta Guadarrama", + "Castell D'Oliana Residencial,S.L", + "Catlab-Centre Analitiques Terrassa, Aie", "Centre Collserola Mutual", + "Centre D'Hospitalitzacio I Hospital De Dia Trastorns De La Conducta", + "Centre D'Oftalmologia Barraquer", + "Centre De Prevencio I Rehabilitacio Asepeyo", + "Centre De Salut Doctor Vilaseca-Can Mariner", + "Centre Forum", + "Centre Geriatric Del Maresme", + "Centre Hospitalari Policlinica Barcelona", + "Centre Integral De Serveis En Salut Mental Comunitaria", + "Centre La Creueta", + "Centre Medic Molins, Sl", + "Centre Mq Reus", + "Centre Palamos Gent Gran", + "Centre Polivalent Can Fosc", + "Centre Sanitari Del Solsones, Fpc", + "Centre Social I Sanitari Frederica Montseny", + "Centre Sociosanitari Bernat Jaume", + "Centre Sociosanitari Blauclinic Dolors Aleu", + "Centre Sociosanitari Can Torras", + "Centre Sociosanitari Ciutat De Reus", + "Centre Sociosanitari D'Esplugues", + "Centre Sociosanitari De L'Hospitalet - Consorci Sanitari Integral", + "Centre Sociosanitari De Puigcerda", + "Centre Sociosanitari Del Centre Integral De Salut Cotxeres", + "Centre Sociosanitari El Carme", + "Centre Sociosanitari I Residencia Assistida Salou", + "Centre Sociosanitari Isabel Roig", + "Centre Sociosanitari Llevant", + "Centre Sociosanitari Parc Hospitalari Marti I Julia", + "Centre Sociosanitari Ricard Fortuny", + "Centre Sociosanitari Sant Jordi De La Vall D'Hebron", "Centre Sociosanitari Sarquavitae Sant Jordi", + "Centre Sociosanitari Verge Del Puig", + "Centres Assistencials Dr. Emili Mira I Lopez (Recinte Torribera).", + "Centro Asistencial Albelda De Iregua", + "Centro Asistencial Hnas. Hospitalarias Del Sagrado Corazon De Jesus", + "Centro Asistencial San Juan De Dios", + "Centro De Atencion A La Salud Mental, La Milagrosa", + "Centro De Rehabilitacion Neurologica Casaverde", + "Centro De Rehabilitacion Psicosocial Nuestra Señora Del Pilar", + "Centro De Rehabilitacion Psicosocial San Juan De Dios", + "Centro De Rehabilitacion Psicosocial Santo Cristo De Los Milagros", + "Centro De Tratamiento De Drogodependientes El Alba", + "Centro De Tratamiento Integral Montevil", + "Centro Habilitado Ernest Lluch", + "Centro Hospitalario Benito Menni", + "Centro Hospitalario De Alta Resolucion De Cazorla", + "Centro Hospitalario Padre Menni", + "Centro Medico De Asturias", + "Centro Medico El Carmen", + "Centro Medico Pintado", + "Centro Medico Teknon, Grupo Quironsalud", + "Centro Militar de Veterinaria de la Defensa", + "Centro Neuropsiquiatrico Nuestra Señora Del Carmen", + "Centro Oncoloxico De Galicia", + "Centro Residencial Domusvi La Salut Josep Servat.", + "Centro Salud Mental Perez Espinosa", + "Centro San Francisco Javier", + "Centro San Juan De Dios Ciempozuelos", + "Centro Sanitario Bajo Cinca-Baix Cinca", + "Centro Sanitario Cinco Villas", + "Centro Sanitario Residencial Las Palmas (Cesar Las Palmas)", + "Centro Sociosanitario De Convalecencia Nuestra Señora Virgen Del Carmen", + "Centro Sociosanitario De Convalencencia Los Jazmines", + "Centro Sociosanitario De Merida", + "Centro Sociosanitario De Plasencia", + "Centro Terapeutico Vista Alegre", + "Centro de Investigación Biomédica de Aragón", + "Clinica Activa Mutua 2008", + "Clinica Arcangel San Miguel - Pamplona", + "Clinica Asturias", + "Clinica Bandama", + "Clinica Bofill", + "Clinica Cajal", + "Clinica Cemtro", + "Clinica Corachan", + "Clinica Coroleu - Ssr Hestia.", + "Clinica Creu Blanca", + "Clinica Cristo Rey", + "Clinica De Salud Mental Miguel De Mañara", + "Clinica Diagonal", + "Clinica Doctor Sanz Vazquez", + "Clinica Dr. Leon", + "Clinica El Seranil", + "Clinica Ercilla Mutualia", + "Clinica Galatea", + "Clinica Girona", + "Clinica Guimon, S.A.", + "Clinica Imq Zorrotzaurre", + "Clinica Imske", + "Clinica Indautxu, S.A.", + "Clinica Isadora S.A.", + "Clinica Jorgani", + "Clinica Juaneda", + "Clinica Juaneda Mahon", + "Clinica Juaneda Menorca", + "Clinica La Luz, S.L.", + "Clinica Lluria", + "Clinica Lopez Ibor", + "Clinica Los Alamos", + "Clinica Los Manzanos", + "Clinica Los Naranjos", + "Clinica Luz De Palma", + "Clinica Mc Copernic", + "Clinica Mc Londres", + "Clinica Mi Nova Aliança", + "Clinica Montpellier, Grupo Hla, S.A.U", + "Clinica Nostra Senyora De Guadalupe", + "Clinica Nostra Senyora Del Remei", + "Clinica Nuestra Se?Ora De Aranzazu", + "Clinica Nuestra Señora De La Paz", + "Clinica Perpetuo Socorro De Lerida, Grupo Hla, Slu", + "Clinica Planas", + "Clinica Ponferrada Recoletas", + "Clinica Psicogeriatrica Josefina Arregui", + "Clinica Psiquiatrica Bellavista", + "Clinica Psiquiatrica Padre Menni", + "Clinica Psiquiatrica Somio", + "Clinica Quirurgica Onyar", + "Clinica Residencia El Pinar", + "Clinica Rotger", + "Clinica Sagrada Familia", + "Clinica Salus Infirmorum", + "Clinica San Felipe", + "Clinica San Miguel", + "Clinica San Rafael", + "Clinica Sant Antoni", + "Clinica Sant Josep", + "Clinica Santa Creu", + "Clinica Santa Isabel", + "Clinica Santa Maria De La Asuncion (Inviza S. A.)", + "Clinica Santa Teresa", + "Clinica Soquimex", + "Clinica Tara", + "Clinica Terres De L'Ebre", + "Clinica Tres Torres", + "Clinica Universidad De Navarra", + "Clinica Virgen Blanca", + "Clinica Vistahermosa Grupo Hla", + "Clinicas Del Sur Slu", + "Complejo Asistencial Benito Menni", + "Complejo Asistencial De Soria", + "Complejo Asistencial De Zamora", + "Complejo Asistencial De Ávila", + "Complejo Asistencial Universitario De Burgos", + "Complejo Asistencial Universitario De León", + "Complejo Asistencial Universitario De Palencia", + "Complejo Asistencial Universitario De Salamanca", + "Complejo Hospital Costa Del Sol", + "Complejo Hospital Infanta Margarita", + "Complejo Hospital La Merced", + "Complejo Hospital San Juan De La Cruz", + "Complejo Hospital Universitario Clínico San Cecilio", + "Complejo Hospital Universitario De Jaén", + "Complejo Hospital Universitario De Puerto Real", + "Complejo Hospital Universitario Juan Ramón Jiménez", + "Complejo Hospital Universitario Puerta Del Mar", + "Complejo Hospital Universitario Regional De Málaga", + "Complejo Hospital Universitario Reina Sofía", + "Complejo Hospital Universitario Torrecárdenas", + "Complejo Hospital Universitario Virgen De La Victoria", + "Complejo Hospital Universitario Virgen De Las Nieves", + "Complejo Hospital Universitario Virgen De Valme", + "Complejo Hospital Universitario Virgen Del Rocío", + "Complejo Hospital Universitario Virgen Macarena", + "Complejo Hospital Valle De Los Pedroches", + "Complejo Hospitalario De Albacete", + "Complejo Hospitalario De Cartagena Chc", + "Complejo Hospitalario De Cáceres", + "Complejo Hospitalario De Don Benito-Villanueva De La Serena", + "Complejo Hospitalario De Toledo", + "Complejo Hospitalario Del Área De Salud De Mérida", + "Complejo Hospitalario Gregorio Marañón", + "Complejo Hospitalario Infanta Leonor", + "Complejo Hospitalario La Paz", + "Complejo Hospitalario Llerena-Zafra", + "Complejo Hospitalario San Pedro Hospital De La Rioja", + "Complejo Hospitalario Universitario De Badajoz", + "Complejo Hospitalario Universitario De Canarias", + "Complejo Hospitalario Universitario De Gran Canaria Dr. Negrín", + "Complejo Hospitalario Universitario Insular Materno Infantil", + "Complejo Hospitalario Universitario Nuestra Señora De Candelaria", + "Complejo Instituto Psiquiátrico Servicios De Salud Mental José Germain", + "Complexo Hospitalario Universitario A Coruña", + "Complexo Hospitalario Universitario De Ferrol", + "Complexo Hospitalario Universitario De Lugo", + "Complexo Hospitalario Universitario De Ourense", + "Complexo Hospitalario Universitario De Pontevedra", + "Complexo Hospitalario Universitario De Santiago", + "Complexo Hospitalario Universitario De Vigo", + "Comunitat Terapeutica Arenys De Munt", + "Concheiro Centro Medico Quirurgico", + "Consejería de Sanidad", + "Consorcio Hospital General Universitario De Valencia", + "Consorcio Hospitalario Provincial De Castellon", + "Consorcio LUCIA (SACYL,ITACYL UBU,UVa)", + "Cqm Clinic Maresme, Sl", + "Cti De La Corredoria", + "Eatica", + "Espitau Val D'Aran", + "Fraternidad Muprespa, Mutua Colaboradora Con La Seguridad Social Nº 275", + "Fremap Hospital Majadahonda", + "Fremap, Hospital De Barcelona", + "Fremap, Hospital De Vigo", + "Fremap_Hospital Y Centro De Rehabilitacion De Sevilla", + "Fundacio Hospital De L'Esperit Sant", + "Fundacio Hospital Sant Joan De Deu (Martorell)", + "Fundacio Puigvert - Iuna", + "Fundacio Sanitaria Sant Josep", + "Fundacio Sant Hospital.", + "Fundacion Cudeca. Centro De Cuidados Paliativos", + "Fundacion Hospital De Aviles", + "Fundacion Instituto San Jose", + "Fundacion Instituto Valenciano De Oncologia", + "Fundacion Sanatorio Adaro", + "Fundació Althaia-Manresa", + "Fundació Fisabio", + "Gerencia de Atención Primaria Pontevedra Sur", + "Gerencia de Salud de Area de Soria", + "Germanes Hospitalaries. Hospital Sagrat Cor", + "Grupo Quironsalud Pontevedra", + "Hc Marbella International Hospital", + "Helicopteros Sanitarios Hospital", + "Hestia Balaguer.", + "Hestia Duran I Reynals", + "Hestia Gracia", + "Hestia La Robleda", + "Hestia Palau.", + "Hestia San Jose", + "Hm El Pilar", + "Hm Galvez", + "Hm Hospitales 1.989, S.A.", + "Hm Malaga", + "Hm Modelo-Belen", + "Hm Nou Delfos", + "Hm Regla", + "Hospital 9 De Octubre", + "Hospital Aita Menni", + "Hospital Alto Guadalquivir", + "Hospital Arnau De Vilanova", + "Hospital Asepeyo Madrid", + "Hospital Asilo De La Real Piedad De Cehegin", + "Hospital Asociado Universitario Guadarrama", + "Hospital Asociado Universitario Virgen De La Poveda", + "Hospital Beata Maria Ana", + "Hospital Begoña", + "Hospital Bidasoa (Osi Bidasoa)", + "Hospital C. M. Virgen De La Caridad Cartagena", + "Hospital Campo Arañuelo", + "Hospital Can Misses", + "Hospital Carlos Iii", + "Hospital Carmen Y Severo Ochoa", + "Hospital Casaverde Valladolid", + "Hospital Catolico Casa De Salud", + "Hospital Central De La Cruz Roja, San Jose Y Santa Adela", + "Hospital Central De La Defensa Gomez Ulla", + "Hospital Centro De Andalucia", + "Hospital Centro De Cuidados Laguna", + "Hospital Centro Medico Virgen De La Caridad Caravaca", + "Hospital Ciudad De Coria", + "Hospital Ciudad De Telde", + "Hospital Civil", + "Hospital Clinic De Barcelona", + "Hospital Clinic De Barcelona, Seu Plato", + "Hospital Clinic De Barcelona, Seu Sabino De Arana", + "Hospital Clinica Benidorm", + "Hospital Clinico Universitario De Valencia", + "Hospital Clinico Universitario De Valladolid", + "Hospital Clinico Universitario Lozano Blesa", + "Hospital Clinico Universitario Virgen De La Arrixaca", + "Hospital Comarcal", + "Hospital Comarcal D'Amposta", + "Hospital Comarcal De Blanes", + "Hospital Comarcal De L'Alt Penedes", + "Hospital Comarcal De Laredo", + "Hospital Comarcal De Vinaros", + "Hospital Comarcal Del Noroeste", + "Hospital Comarcal Del Pallars", + "Hospital Comarcal D´Inca", + "Hospital Comarcal Mora D'Ebre", + "Hospital Comarcal Sant Jaume De Calella", + "Hospital Cruz Roja De Bilbao - Victoria Eugenia", + "Hospital Cruz Roja De Cordoba", + "Hospital Cruz Roja Gijon", + "Hospital D'Igualada", + "Hospital D'Olot I Comarcal De La Garrotxa", + "Hospital De Alcañiz", + "Hospital De Alta Resolucion De Alcala La Real", + "Hospital De Alta Resolucion De Alcaudete", + "Hospital De Alta Resolucion De Benalmadena", + "Hospital De Alta Resolucion De Ecija", + "Hospital De Alta Resolucion De Especialidades De La Janda", + "Hospital De Alta Resolucion De Estepona", + "Hospital De Alta Resolucion De Guadix", + "Hospital De Alta Resolucion De Lebrija", + "Hospital De Alta Resolucion De Loja", + "Hospital De Alta Resolucion De Moron De La Frontera", + "Hospital De Alta Resolucion De Puente Genil", + "Hospital De Alta Resolucion De Utrera", + "Hospital De Alta Resolucion Eltoyo", + "Hospital De Alta Resolucion Sierra De Segura", + "Hospital De Alta Resolucion Sierra Norte", + "Hospital De Alta Resolucion Valle Del Guadiato", + "Hospital De Antequera", + "Hospital De Barbastro", + "Hospital De Barcelona", + "Hospital De Baza", + "Hospital De Benavente Complejo Asistencial De Zamora", + "Hospital De Berga", + "Hospital De Bermeo", + "Hospital De Calahorra", + "Hospital De Campdevanol", + "Hospital De Cantoblanco", + "Hospital De Cerdanya / Hopital De Cerdagne", + "Hospital De Cronicos De Mislata (Antiguo Hospital Militar De Valencia)", + "Hospital De Cuidados Medios Villademar", + "Hospital De Denia", + "Hospital De Emergencia Covid 19", + "Hospital De Figueres", + "Hospital De Formentera", + "Hospital De Gorliz", + "Hospital De Hellin", + "Hospital De Jaca Salud", + "Hospital De Jarrio", + "Hospital De Jove", + "Hospital De L'Esperança.", + "Hospital De La Axarquia", + "Hospital De La Creu Roja Espanyola", + "Hospital De La Fuenfria", + "Hospital De La Inmaculada Concepcion", + "Hospital De La Malva-Rosa", + "Hospital De La Mujer", + "Hospital De La Reina", + "Hospital De La Rioja", + "Hospital De La Santa Creu", + "Hospital De La Santa Creu I Sant Pau", + "Hospital De La Serrania", + "Hospital De La V.O.T. De San Francisco De Asis", + "Hospital De La Vega Lorenzo Guirao", + "Hospital De Leon Complejo Asistencial Universitario De Leon", + "Hospital De Leza", + "Hospital De Llevant", + "Hospital De Lliria", + "Hospital De Luarca", + "Hospital De Manacor", + "Hospital De Manises", + "Hospital De Mataro", + "Hospital De Mendaro (Osi Bajo Deba)", + "Hospital De Merida", + "Hospital De Mollet", + "Hospital De Montilla", + "Hospital De Neurotraumatologia Y Rehabilitacion Del H.U. Virgen De Las Nieves", + "Hospital De Ofra", + "Hospital De Palamos", + "Hospital De Rehabilitacion Psiquiatrica Prisma", + "Hospital De Rehabilitacion Y Traumatologia Del H.U. Virgen Del Rocio", + "Hospital De Riotinto", + "Hospital De Sabadell", + "Hospital De Sagunto", + "Hospital De Salud Mental Casta Salud Arevalo", + "Hospital De Salud Mental Provincial", + "Hospital De San Antonio", + "Hospital De San Jose", + "Hospital De San Rafael", + "Hospital De Sant Andreu", + "Hospital De Sant Celoni.", + "Hospital De Sant Jaume", + "Hospital De Sant Joan De Deu (Manresa)", + "Hospital De Sant Joan De Deu.", + "Hospital De Sant Joan Despi Moises Broggi", + "Hospital De Sant Llatzer", + "Hospital De Sant Pau I Santa Tecla", + "Hospital De Terrassa.", + "Hospital De Tortosa Verge De La Cinta", + "Hospital De Viladecans", + "Hospital De Zafra", + "Hospital De Zaldibar", + "Hospital De Zamudio", + "Hospital De Zumarraga (Osi Goierri - Alto Urola)", + "Hospital Del Mar", + "Hospital Del Norte", + "Hospital Del Oriente De Asturias Francisco Grande Covian", + "Hospital Del Sur", + "Hospital Del Vendrell", + "Hospital Doctor Moliner", + "Hospital Doctor Oloriz", + "Hospital Doctor Sagaz", + "Hospital Don Benito-Villanueva De La Serena", + "Hospital Dos De Maig", + "Hospital Egarsat Sant Honorat", + "Hospital El Angel", + "Hospital El Bierzo", + "Hospital El Escorial", + "Hospital El Pilar", + "Hospital El Tomillar", + "Hospital Ernest Lluch Martin", + "Hospital Fatima", + "Hospital Francesc De Borja De Gandia", + "Hospital Fuensanta", + "Hospital Fuente Bermeja- Complejo Asistencial Universitario De Burgos-", + "Hospital G. Universitario J.M. Morales Meseguer", + "Hospital Galdakao-Usansolo Asociado A La Upv/Ehu", + "Hospital Garcia Orcoyen", + "Hospital General De Almansa", + "Hospital General De Fuerteventura", + "Hospital General De Granollers.", + "Hospital General De L'Hospitalet", + "Hospital General De La Defensa En Zaragoza", + "Hospital General De La Santisima Trinidad", + "Hospital General De Llerena", + "Hospital General De Mallorca", + "Hospital General De Ontinyent", + "Hospital General De Requena", + "Hospital General De Segovia Complejo Asistencial De Segovia", + "Hospital General De Tomelloso", + "Hospital General De Valdepeñas", + "Hospital General De Villalba", + "Hospital General De Villarrobledo", + "Hospital General La Mancha Centro", + "Hospital General Nuestra Señora Del Prado", "Hospital General Penitenciari", - "Centre Sociosanitari De L'Hospitalet - Consorci Sanitari Integral", - "Sar La Salut Josep Servat", - "Clínica Creu Blanca", - "Hestia Gràcia", - "Centre Sociosanitari D'Esplugues", - "Centre Sociosanitari Ricard Fortuny", - "Centre Residencial Amma Diagonal", - "Centre Fòrum", - "Centre Sociosanitari Blauclínic Dolors Aleu", - "Parc Sanitari Sant Joan De Déu - Til·Lers", - "Clínica Galatea", - "Hospital D'Igualada", - "Centre Social I Sanitari Frederica Montseny", - "Parc Sanitari Sant Joan De Deu-Serveis Sanitaris Centre Penitenciari Brians-2", - "Centre Integral De Serveis En Salut Mental Comunitària", - "Centre Sociosanitari Sant Jordi De La Vall D'Hebron", - "Lepant Residencial Qgg, Sl", - "Mapfre Quavitae Barcelona", - "Unitat Polivalent Salut Mental Barcelona-Nord", - "Cqm Clínic Maresme, Sl", - "Serveis Sanitaris La Roca Del Valles 2", - "Clínica Del Vallès", - "Centre Gerontològic Amma Sant Cugat", - "Serveis Sanitaris Sant Joan De Vilatorrada", - "Centre Sociosanitari Stauros", - "Hospital De Sant Joan Despí Moisès Broggi", - "Amma Horta", - "Unitat Polivalent Benito Menni En Salut Mental De L'Hospitalet-El Prat De Llobregat", - "Centre Sociosanitari Del Centre Integral De Salut Cotxeres", - "Clínica Sant Antoni", - "Clínica Diagonal", - "Hospital Sociosanitari De Mollet", - "Centre Sociosanitari Isabel Roig", - "Iván Mañero Clínic", - "Institut Trastorn Límit", - "Centre D'Hospitalització I Hospital De Dia Trastorns De La Conducta", - "Sarquavitae Bonanova", - "Centre La Creueta", - "Unitat Terapèutica-Educativa Acompanya'M", - "Hospital Fuente Bermeja", + "Hospital General Santa Maria Del Puerto", + "Hospital General Universitario De Albacete", + "Hospital General Universitario De Castellon", + "Hospital General Universitario De Ciudad Real", + "Hospital General Universitario De Elche", + "Hospital General Universitario De Elda-Virgen De La Salud", + "Hospital General Universitario Dr. Balmis", + "Hospital General Universitario Gregorio Marañon", + "Hospital General Universitario Los Arcos Del Mar Menor", + "Hospital General Universitario Reina Sofia", + "Hospital General Universitario Santa Lucia", + "Hospital Geriatrico Virgen Del Valle", + "Hospital Gijon", + "Hospital Hernan Cortes Miraflores", + "Hospital Hestia Madrid", + "Hospital Hla Universitario Moncloa", + "Hospital Hm Nuevo Belen", + "Hospital Hm Rosaleda-Hm La Esperanza", + "Hospital Hm San Francisco", + "Hospital Hm Valles", + "Hospital Ibermutuamur - Patologia Laboral", + "Hospital Imed Elche", + "Hospital Imed Gandia", + "Hospital Imed Levante", + "Hospital Imed San Jorge", + "Hospital Infanta Elena", + "Hospital Infanta Margarita", + "Hospital Infantil", + "Hospital Infantil Universitario Niño Jesus", + "Hospital Insular De Lanzarote", + "Hospital Insular Nuestra Señora De Los Reyes", + "Hospital Intermutual De Euskadi", + "Hospital Intermutual De Levante", + "Hospital Internacional Hcb Denia", + "Hospital Internacional Hm Santa Elena", + "Hospital Jaume Nadal Meroles", + "Hospital Jerez Puerta Del Sur", + "Hospital Joan March", + "Hospital Juaneda Muro", + "Hospital La Antigua", + "Hospital La Inmaculada", + "Hospital La Magdalena", + "Hospital La Merced", + "Hospital La Milagrosa S.A.", + "Hospital La Paloma", + "Hospital La Pedrera", + "Hospital La Vega Grupo Hla", + "Hospital Latorre", + "Hospital Lluis Alcanyis De Xativa", + "Hospital Los Madroños", + "Hospital Los Montalvos (Complejo Asistencial Universitario De Salamanca)", + "Hospital Los Morales", + "Hospital Mare De Deu De La Merce", + "Hospital Marina Baixa De La Vila Joiosa", + "Hospital Maritimo De Torremolinos", + "Hospital Materno - Infantil Del H.U. Reina Sofia", + "Hospital Materno Infantil", + "Hospital Materno Infantil Del H.U.R. De Malaga", + "Hospital Materno-Infantil", + "Hospital Materno-Infantil Del H.U. De Jaen", + "Hospital Materno-Infantil Del H.U. Virgen De Las Nieves", + "Hospital Mateu Orfila", + "Hospital Maz", + "Hospital Md Anderson Cancer Center Madrid", + "Hospital Medimar Internacional", + "Hospital Medina Del Campo", + "Hospital Mediterraneo", + "Hospital Mesa Del Castillo", + "Hospital Metropolitano De Jaen", + "Hospital Mompia", + "Hospital Monte Naranco", + "Hospital Monte San Isidro Complejo Asistencial Universitario De Leon", + "Hospital Municipal De Badalona", + "Hospital Mutua Montañesa", + "Hospital Nacional De Paraplejicos", + "Hospital Neurotraumatologico Del H.U. De Jaen", + "Hospital Nisa Aguas Vivas", + "Hospital Ntra. Sra. Del Perpetuo Socorro", + "Hospital Nuestra Señora De America", + "Hospital Nuestra Señora De Gracia", + "Hospital Nuestra Señora De Guadalupe", + "Hospital Nuestra Señora De La Salud Hla Sl", + "Hospital Nuestra Señora De Sonsoles", + "Hospital Obispo Polanco", + "Hospital Ochoa", + "Hospital Palma Del Rio", + "Hospital Pardo De Aravaca", + "Hospital Pare Jofre", + "Hospital Parque", + "Hospital Parque Fuerteventura", + "Hospital Parque Marazuela", + "Hospital Parque San Francisco", + "Hospital Parque Vegas Altas", + "Hospital Perpetuo Socorro", + "Hospital Perpetuo Socorro Alameda", + "Hospital Polivalente Anexo Juan Carlos I", + "Hospital Provincial", + "Hospital Provincial De Avila", + "Hospital Provincial De Zamora Complejo Asistencial De Zamora", + "Hospital Provincial Ntra.Sra.De La Misericordia", + "Hospital Psiquiatric", + "Hospital Psiquiatrico Doctor Rodriguez Lafora", + "Hospital Psiquiatrico Penitenciario", + "Hospital Psiquiatrico Penitenciario De Fontcalent", + "Hospital Psiquiatrico Roman Alberca", + "Hospital Psiquiatrico San Francisco De Asis", + "Hospital Psiquiatrico San Juan De Dios", + "Hospital Psiquiatrico San Luis", + "Hospital Publico Da Barbanza", + "Hospital Publico Da Mariña", + "Hospital Publico De Monforte", + "Hospital Publico De Valdeorras", + "Hospital Publico De Verin", + "Hospital Publico Do Salnes", + "Hospital Publico Virxe Da Xunqueira", + "Hospital Puerta De Andalucia", + "Hospital Punta De Europa", + "Hospital Quiron Campo De Gibraltar", + "Hospital Quiron Salud Costa Adeje", + "Hospital Quiron Salud Del Valles - Clinica Del Valles", + "Hospital Quiron Salud Lugo", + "Hospital Quiron Salud Tenerife", + "Hospital Quiron Salud Valle Del Henares", + "Hospital Quironsalud A Coruña", + "Hospital Quironsalud Albacete", + "Hospital Quironsalud Barcelona", + "Hospital Quironsalud Bizkaia", + "Hospital Quironsalud Caceres", + "Hospital Quironsalud Ciudad Real", + "Hospital Quironsalud Clideba", + "Hospital Quironsalud Cordoba", + "Hospital Quironsalud Huelva", + "Hospital Quironsalud Infanta Luisa", + "Hospital Quironsalud Malaga", + "Hospital Quironsalud Marbella", + "Hospital Quironsalud Murcia", + "Hospital Quironsalud Palmaplanas", + "Hospital Quironsalud Sagrado Corazon", + "Hospital Quironsalud San Jose", + "Hospital Quironsalud Santa Cristina", + "Hospital Quironsalud Son Veri", + "Hospital Quironsalud Sur", + "Hospital Quironsalud Toledo", + "Hospital Quironsalud Torrevieja", + "Hospital Quironsalud Valencia", + "Hospital Quironsalud Vida", + "Hospital Quironsalud Vitoria", + "Hospital Quironsalud Zaragoza", + "Hospital Rafael Mendez", + "Hospital Recoletas Cuenca, S.L.U.", "Hospital Recoletas De Burgos", - "Hospital San Juan De Dios De Burgos", - "Hospital Santos Reyes", - "Hospital Residencia Asistida De La Luz", - "Hospital Santiago Apóstol", - "Complejo Asistencial Universitario De Burgos", - "Hospital Universitario De Burgos", - "Hospital San Pedro De Alcántara", - "Hospital Provincial Nuestra Señora De La Montaña", - "Hospital Ciudad De Coria", - "Hospital Campo Arañuelo", - "Hospital Virgen Del Puerto", - "Hospital Sociosanitario De Plasencia", - "Complejo Hospitalario De Cáceres", - "Hospital Quirón Salud De Cáceres", - "Clínica Soquimex", - "Clinica Quirúrgica Cacereña, S.A-(Clínica San Francisco)", - "Hospital Universitario Puerta Del Mar", - "Clínica La Salud", - "Hospital San Rafael", - "Hospital Punta De Europa", - "Clínica Los Álamos", - "Hospital Universitario De Jerez De La Frontera", + "Hospital Recoletas De Palencia", + "Hospital Recoletas De Zamora", + "Hospital Recoletas Marbella Slu", + "Hospital Recoletas Salud Campo Grande", + "Hospital Recoletas Salud Felipe Ii", + "Hospital Recoletas Segovia Nuestra Señora De La Misericordia", + "Hospital Reina Sofia", + "Hospital Residencia Sant Camil - Consorci Sanitari De L'Alt Penedes I Garraf", + "Hospital Ribera Almendralejo", + "Hospital Ribera Badajoz", + "Hospital Ribera Covadonga", + "Hospital Ribera Juan Cardona", + "Hospital Ribera Polusa", + "Hospital Ribera Povisa", + "Hospital Ricardo Bermingham", + "Hospital Rio Carrion Complejo Asistencial Universitario De Palencia", + "Hospital Royo Villanova", + "Hospital Ruber Internacional", + "Hospital Ruber Juan Bravo", + "Hospital Sagrado Corazon De Jesus", + "Hospital San Agustin", + "Hospital San Camilo", + "Hospital San Carlos De Denia Grupo Hla", + "Hospital San Carlos De San Fernando", + "Hospital San Eloy", + "Hospital San Francisco De Asis", + "Hospital San Jose", + "Hospital San Jose Solimat", + "Hospital San Juan De Dios", + "Hospital San Juan De Dios Burgos", + "Hospital San Juan De Dios De Cordoba", + "Hospital San Juan De Dios De Sevilla", + "Hospital San Juan De Dios Del Aljarafe", + "Hospital San Juan De Dios Donostia", + "Hospital San Juan De Dios Leon", + "Hospital San Juan De Dios Tenerife", + "Hospital San Juan De La Cruz", "Hospital San Juan Grande", - "Hospital De La Línea De La Concepción", - "Hospital General Santa María Del Puerto", - "Hospital Universitario De Puerto Real", - "Hospital Virgen De Las Montañas", - "Hospital Virgen Del Camino", - "Hospital Jerez Puerta Del Sur", - "Hospital Viamed Bahía De Cádiz", - "Hospital Punta De Europa", - "Hospital Viamed Novo Sancti Petri", - "Clínica Serman - Instituto Médico", - "Hospital Quirón Campo De Gibraltar", - "Hospital Punta Europa. Unidad De Cuidados Medios", - "Hospital San Carlos", - "Hospital De La Línea De La Concepción", - "Hospital General Universitario De Castellón", - "Hospital La Magdalena", - "Consorcio Hospitalario Provincial De Castellón", - "Hospital Comarcal De Vinaròs", - "Hospital Universitario De La Plana", - "Instituto De Traumatologia De Unión De Mutuas (Matepss Nº 267)", - "Hospital Rey D. Jaime", - "Servicios Sanitarios Del Centro Penitenciario De Castellón Ii (Albocàsser)", - "Servicios Sanitarios Y Asistenciales", - "Hospital Quirónsalud Ciudad Real", - "Hospital General La Mancha Centro", - "Hospital Virgen De Altagracia", - "Hospital Santa Bárbara", - "Hospital General De Valdepeñas", - "Hospital General De Ciudad Real", - "Hospital General De Tomelloso", - "Hospital Universitario Reina Sofía", - "Hospital Los Morales", - "Hospital Materno-Infantil Del H.U. Reina Sofía", - "Hospital Provincial", - "Hospital De La Cruz Roja De Córdoba", - "Hospital San Juan De Dios De Córdoba", - "Hospital Infanta Margarita", - "Hospital Valle De Los Pedroches", - "Hospital De Montilla", - "Hospital La Arruzafa-Instituto De Oftalmología", - "Hospital De Alta Resolución De Puente Genil", - "Hospital De Alta Resolución Valle Del Guadiato", - "Hospital General Del H.U. Reina Sofía", - "Hospital Quironsalud Córdoba", - "Complexo Hospitalario Universitario A Coruña", - "Hospital Universitario A Coruña", - "Hospital Teresa Herrera (Materno-Infantil)", - "Hospital Maritimo De Oza", - "Centro Oncoloxico De Galicia", - "Hospital Quironsalud A Coruña", - "Hospital Hm Modelo", - "Maternidad Hm Belen", - "Hospital Abente Y Lago", - "Complexo Hospitalario Universitario De Ferrol", - "Hospital Universitario Arquitecto Marcide", - "Hospital Juan Cardona", - "Hospital Naval", - "Complexo Hospitalario Universitario De Santiago", - "Hospital Clinico Universitario De Santiago", - "Hospital Gil Casares", - "Hospital Medico Cirurxico De Conxo", - "Hospital Psiquiatrico De Conxo", - "Hospital Hm Esperanza", - "Hospital Hm Rosaleda", - "Sanatorio La Robleda", - "Hospital Da Barbanza", - "Hospital Virxe Da Xunqueira", - "Hm Modelo (Grupo)", - "Hospital Hm Rosaleda - Hm La Esperanza", - "Hospital Virgen De La Luz", - "Hospital Recoletas Cuenca S.L.U.", - "Hospital Universitari De Girona Dr. Josep Trueta", - "Clínica Bofill", - "Clínica Girona", - "Clínica Quirúrgica Onyar", - "Clínica Salus Infirmorum", - "Hospital De Sant Jaume", - "Hospital De Campdevànol", - "Hospital De Figueres", - "Clínica Santa Creu", + "Hospital San Lazaro", + "Hospital San Pedro De Alcantara", + "Hospital San Rafael", + "Hospital San Roque De Guia", + "Hospital San Telmo ,Complejo Asistencial Universitario De Palencia", + "Hospital Sanitas Cima", + "Hospital Sant Antoni Abat - Consorci Sanitari Del Garraf.", + "Hospital Sant Joan De Deu", + "Hospital Sant Joan De Deu Inca", + "Hospital Sant Joan De Deu Lleida", + "Hospital Sant Vicent Del Raspeig", + "Hospital Santa Ana", + "Hospital Santa Barbara", + "Hospital Santa Barbara ,Complejo Asistencial De Soria", + "Hospital Santa Caterina-Ias", + "Hospital Santa Clotilde", + "Hospital Santa Isabel Complejo Asistencial Universitario De Leon", + "Hospital Santa Maria", + "Hospital Santa Maria Del Rosell", + "Hospital Santa Marina", + "Hospital Santa Teresa", + "Hospital Santiago Apostol", + "Hospital Santos Reyes", + "Hospital Siberia-Serena", + "Hospital Sierrallana", "Hospital Sociosanitari De Lloret De Mar", - "Hospital D'Olot I Comarcal De La Garrotxa", - "Hospital De Palamós", - "Residència De Gent Gran Puig D'En Roca", - "Hospital Comarcal De Blanes", - "Residència Geriàtrica Maria Gay", + "Hospital Sociosanitari De Mollet", + "Hospital Sociosanitari Francoli", "Hospital Sociosanitari Mutuam Girona", - "Centre Sociosanitari De Puigcerdà", - "Centre Sociosanitari Bernat Jaume", - "Institut Català D'Oncologia Girona - Hospital Josep Trueta", - "Hospital Santa Caterina-Ias", - "Centre Palamós Gent Gran", - "Centre Sociosanitari Parc Hospitalari Martí I Julià", - "Hospital De Cerdanya / Hôpital De Cerdagne", - "Hospital General Del H.U. Virgen De Las Nieves", - "Hospital De Neurotraumatología Y Rehabilitación", - "Hospital De La Inmaculada Concepción", - "Hospital De Baza", - "Hospital Santa Ana", - "Hospital Universitario Virgen De Las Nieves", - "Hospital De Alta Resolución De Guadix", - "Hospital De Alta Resolución De Loja", - "Hospital Vithas La Salud", - "Hospital Universitario San Cecilio", - "Microbiología HUC San Cecilio", - "Hospital Materno-Infantil Virgen De Las Nieves", - "Hospital Universitario De Guadalajara", - "Clínica La Antigua", - "Clínica Dr. Sanz Vázquez", - "U.R.R. De Enfermos Psíquicos Alcohete", - "Instituto De Enfermedades Neurológicas De Castilla-La Mancha", - "Mutualia-Clinica Pakea", - "Hospital Ricardo Bermingham (Fundación Matia)", - "Policlínica Gipuzkoa S.A.", - "Hospital Quirón Salud Donostia", - "Fundación Onkologikoa Fundazioa", - "Organización Sanitaria Integrada Bidasoa (Osi Bidasoa)", - "Organización Sanitaria Integrada Alto Deba", - "Hospital Aita Menni", - "Hospital Psiquiátrico San Juan De Dios", - "Clinica Santa María De La Asunción, (Inviza, S.A.)", - "Sanatorio De Usurbil, S.L.", - "Hospital De Zumarraga", - "Hospital De Mendaro", - "Hospital Universitario Donostia-Donostia Unibertsitate Ospitalea", - "Hospital San Juan De Dios Donostia", - "Hospital Infanta Elena", - "Hospital Vázquez Díaz", - "Hospital Blanca Paloma", - "Clínica Los Naranjos", - "Hospital De Riotinto", - "Hospital Universitario Juan Ramón Jiménez", - "Hospital Juan Ramón Jiménez", - "Hospital Costa De La Luz", - "Hospital Virgen De La Bella", - "Hospital General San Jorge", - "Centro De Rehab. Psicosocial Santo Cristo De Los Milagros", - "Hospital Sagrado Corazón De Jesús", - "Hospital Viamed Santiago", - "Hospital De Barbastro", - "Hospital De Jaca.Salud", - "Centro Sanitario Bajo Cinca-Baix Cinca", - "Hospital General Del H.U. De Jaén", - "Hospital Doctor Sagaz", - "Hospital Neurotraumatológico Del H.U. De Jaén", - "Clínica Cristo Rey", - "Hospital San Agustín", - "Hospital San Juan De La Cruz", - "Hospital Universitario De Jaén", - "Hospital Alto Guadalquivir", - "Hospital Materno-Infantil Del H.U. De Jaén", - "Hospital De Alta Resolución Sierra De Segura", - "Hospital De Alta Resolución De Alcaudete", - "Hospital De Alta Resolución De Alcalá La Real", - "Hospital De León", - "Hospital Monte San Isidro", - "Regla Hm Hospitales", - "Hospital Hm San Francisco", - "Hospital Santa Isabel", - "Hospital El Bierzo", - "Hospital De La Reina", - "Hospital San Juan De Dios", - "Complejo Asistencial Universitario De León", - "Clínica Altollano", - "Clínica Ponferrada", - "Hospital Valle De Laciana", + "Hospital Sociosanitari Mutuam Guell", + "Hospital Sociosanitari Pere Virgili", + "Hospital Son Llatzer", + "Hospital Tierra De Barros", "Hospital Universitari Arnau De Vilanova De Lleida", - "Hospital Santa Maria", - "Vithas Hospital Montserrat", - "Clínica Perpetuo Socorro De Lérida, Grupo Hla, Slu", - "Clínica Terres De Ponent", - "Clínica Psiquiàtrica Bellavista", - "Fundació Sant Hospital.", - "Centre Sanitari Del Solsonès, Fpc", - "Hospital Comarcal Del Pallars", - "Espitau Val D'Aran", - "Hestia Balaguer.", - "Residència Terraferma", - "Castell D'Oliana Residencial,S.L", - "Hospital Jaume Nadal Meroles", - "Sant Joan De Déu Terres De Lleida", - "Reeixir", - "Hospital Sant Joan De Déu Lleida", - "Complejo Hospitalario San Millan San Pedro De La Rioja", - "Hospital San Pedro", - "Hospital General De La Rioja", - "Policlínico Riojano Nuestra Señora De Valvanera, S.A.", - "Fundación Hospital Calahorra", - "Clínica Los Manzanos", - "Centro Asistencial De Albelda De Iregua", - "Centro Sociosanitario De Convalecencia Los Jazmines", - "Centro Sociosanitario De Convalecencia Nuestra Señora Virgen Del Carmen", - "Complexo Hospitalario Universitario De Lugo", - "Hospital De Calde (Psiquiatrico)", - "Hospital Polusa", - "Sanatorio Nosa Señora Dos Ollos Grandes", - "Hospital Publico Da Mariña", - "Hospital De Monforte", - "Hospital Universitario Lucus Augusti", - "Hospital Universitario La Paz", - "Hospital Ramón Y Cajal", + "Hospital Universitari De Bellvitge", + "Hospital Universitari De Girona Dr. Josep Trueta", + "Hospital Universitari De Sant Joan De Reus", + "Hospital Universitari De Vic", + "Hospital Universitari General De Catalunya", + "Hospital Universitari Germans Trias I Pujol De Badalona", + "Hospital Universitari Joan Xxiii De Tarragona", + "Hospital Universitari Mutua De Terrassa", + "Hospital Universitari Quir¿N Dexeus", + "Hospital Universitari Sagrat Cor", + "Hospital Universitari Son Espases", + "Hospital Universitari Vall D'Hebron", "Hospital Universitario 12 De Octubre", - "Hospital Clínico San Carlos", - "Hospital Virgen De La Torre", - "Hospital Universitario Santa Cristina", - "Hospital Universitario De La Princesa", - "Hospital Infantil Universitario Niño Jesus", - "Hospital Central De La Cruz Roja San José Y Santa Adela", - "Hospital Carlos Iii", - "Hospital Cantoblanco", - "Complejo Hospitalario Gregorio Marañón", - "Hospital General Universitario Gregorio Marañón", - "Instituto Provincial De Rehabilitación", - "Hospital Dr. R. Lafora", - "Sanatorio Nuestra Señora Del Rosario", - "Hospital De La V.O.T. De San Francisco De Asís", - "Hospital Quirónsalud San José", - "Hospital Beata María Ana. Hh. Hospitalarias Sgdo. C. De Jesús", - "Clínica Santa Elena", - "Hospital San Francisco De Asís", - "Clínica San Miguel", - "Clínica Nuestra Sra. De La Paz", - "Fundación Instituto San José", - "Hospital Universitario Fundación Jiménez Díaz", - "Hestia Madrid (Clínica Sear, S.A.)", - "Hospital Ruber Juan Bravo 39", - "Hospital Vithas Nuestra Señora De América", - "Hospital Virgen De La Paloma, S.A.", - "Clínica La Luz, S.L.", - "Fuensanta S.L. (Clínica Fuensanta)", - "Hospital Ruber Juan Bravo 49", - "Hospital Ruber Internacional", - "Clínica La Milagrosa", - "Hospital Universitario La Zarzuela", - "Hospital Universitario Hm Nuevo Belen", - "Sanatorio Neuropsiquiátrico Doctor León", - "Instituto De Investigaciones Neuropsiquiátricas Dr. López Ibor", - "Sanatorio Esquerdo, S.A.", - "Hospital Central De La Defensa Gomez Ulla", - "Hospital Universitario Príncipe De Asturias", - "Hospital De La Fuenfría", - "Hh. Hh. Sgdo. C. De Jesús. Complejo Asistencial Benito Menni", - "Centro San Juan De Dios", - "Hospital Monográfico Asepeyo De Traumat. Cirugía Y Rehabilitación", - "Hospital Guadarrama", - "Hospital Universitario Severo Ochoa", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain-1 Luna", - "Fremap Hospital Y Centro De Rehabilitación De Majadahonda", - "Hospital Universitario De Móstoles", - "Hospital El Escorial", - "Hospital Virgen De La Poveda", - "Hospital De Madrid", - "Hospital Universitario De Getafe", - "Clínica Isadora", - "Hospital Universitario Moncloa", - "Hospital Universitario Fundación Alcorcón", - "Clinica Cemtro", - "Hospital Universitario Hm Montepríncipe", - "Centro Oncológico Md Anderson International España", - "Hospital Quironsalud Sur", + "Hospital Universitario Araba (Sede Txagorritxu Y Sede Santiago)", + "Hospital Universitario Basurto", + "Hospital Universitario Central De Asturias", + "Hospital Universitario Clinico San Carlos", + "Hospital Universitario Clinico San Cecilio", + "Hospital Universitario Costa Del Sol", + "Hospital Universitario Cruces", + "Hospital Universitario De Badajoz", + "Hospital Universitario De Burgos Complejo Asistencial Univer. De Burgos", + "Hospital Universitario De Cabueñes", + "Hospital Universitario De Caceres", + "Hospital Universitario De Canarias", + "Hospital Universitario De Ceuta", "Hospital Universitario De Fuenlabrada", - "Hospital Universitario Hm Torrelodones", - "Complejo Universitario La Paz", - "Hospital La Moraleja", - "Hospital Los Madroños", - "Hospital Quirónsalud Madrid", - "Hospital Centro De Cuidados Laguna", - "Hospital Universitario Madrid Sanchinarro", - "Hospital Universitario Infanta Elena", - "Vitas Nisa Pardo De Aravaca.", - "Hospital Universitario Infanta Sofía", + "Hospital Universitario De Getafe", + "Hospital Universitario De Gran Canaria Dr. Negrin", + "Hospital Universitario De Guadalajara", + "Hospital Universitario De Jaen", + "Hospital Universitario De Jerez De La Frontera", + "Hospital Universitario De La Linea De La Concepcion", + "Hospital Universitario De La Plana", + "Hospital Universitario De La Princesa", + "Hospital Universitario De La Ribera", + "Hospital Universitario De Mostoles", + "Hospital Universitario De Navarra", + "Hospital Universitario De Poniente", + "Hospital Universitario De Puerto Real", + "Hospital Universitario De Salamanca ,Complejo Asistencial Universitario De", + "Hospital Universitario De Salud Mental Juan Carlos I", + "Hospital Universitario De Toledo (Hut)", + "Hospital Universitario De Torrejon", + "Hospital Universitario De Torrevieja", "Hospital Universitario Del Henares", - "Hospital Universitario Infanta Leonor", "Hospital Universitario Del Sureste", "Hospital Universitario Del Tajo", + "Hospital Universitario Donostia", + "Hospital Universitario Dr. Jose Molina Orosa", + "Hospital Universitario Dr. Peset Aleixandre", + "Hospital Universitario Fundacion Alcorcon", + "Hospital Universitario Fundacion Jimenez Diaz", + "Hospital Universitario General De La Palma", + "Hospital Universitario Hm Madrid", + "Hospital Universitario Hm Monteprincipe", + "Hospital Universitario Hm Puerta Del Sur", + "Hospital Universitario Hm Sanchinarro", + "Hospital Universitario Hm Torrelodones", + "Hospital Universitario Hospiten Bellevue", + "Hospital Universitario Hospiten Rambla", + "Hospital Universitario Hospiten Sur", "Hospital Universitario Infanta Cristina", + "Hospital Universitario Infanta Elena", + "Hospital Universitario Infanta Leonor", + "Hospital Universitario Infanta Sofia", + "Hospital Universitario Jose Germain", + "Hospital Universitario Juan Ramon Jimenez", + "Hospital Universitario La Moraleja", + "Hospital Universitario La Paz", + "Hospital Universitario La Zarzuela", + "Hospital Universitario Lucus Augusti", + "Hospital Universitario Marques De Valdecilla", + "Hospital Universitario Miguel Servet", + "Hospital Universitario Nuestra Señora De Candelaria", + "Hospital Universitario Nuestra Señora Del Perpetuo Socorro", + "Hospital Universitario Principe De Asturias", "Hospital Universitario Puerta De Hierro Majadahonda", - "Casta Guadarrama", - "Hospital Universitario De Torrejón", - "Hospital Rey Juan Carlos", - "Hospital General De Villalba", - "Hm Universitario Puerta Del Sur", - "Hm Valles", - "Hospital Casaverde De Madrid", - "Clínica Universidad De Navarra", - "Complejo Hospitalario Universitario Infanta Leonor", - "Clínica San Vicente", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain", - "Instituto Psiquiátrico Servicios De Salud Mental José Germain-2 Aragón", - "Hospital General Del H.U.R. De Málaga", - "Hospital Virgen De La Victoria", - "Hospital Civil", - "Centro Asistencial San Juan De Dios", - "Centro Asistencial Hnas. Hosp. Del Sagrado Corazón De Jesús", - "Hospital Vithas Parque San Antonio", - "Hospital El Ángel", - "Hospital Doctor Gálvez", - "Clínica De La Encarnación", - "Hospital Psiquiátrico San Francisco De Asís", - "Clínica Nuestra Sra. Del Pilar", - "Hospital De Antequera", - "Hospital Quironsalud Marbella", - "Hospital De La Axarquía", - "Hospital Marítimo De Torremolinos", - "Hospital Universitario Regional De Málaga", + "Hospital Universitario Puerta Del Mar", + "Hospital Universitario Quironsalud Madrid", + "Hospital Universitario Ramon Y Cajal", + "Hospital Universitario Regional De Malaga", + "Hospital Universitario Reina Sofia", + "Hospital Universitario Rio Hortega", + "Hospital Universitario San Agustin", + "Hospital Universitario San Jorge", + "Hospital Universitario San Juan De Alicante", + "Hospital Universitario San Pedro", + "Hospital Universitario San Roque Las Palmas", + "Hospital Universitario San Roque Maspalomas", + "Hospital Universitario Santa Cristina", + "Hospital Universitario Severo Ochoa", + "Hospital Universitario Torrecardenas", + "Hospital Universitario Vinalopo", "Hospital Universitario Virgen De La Victoria", - "Hospital Materno-Infantil Del H.U.R. De Málaga", - "Hospital Costa Del Sol", - "Hospital F.A.C. Doctor Pascual", - "Clínica El Seranil", - "Hc Marbella International Hospital", - "Hospital Humanline Banús", - "Clínica Rincón", - "Hospiten Estepona", - "Fundación Cudeca. Centro De Cuidados Paliativos", - "Xanit Hospital Internacional", - "Comunidad Terapéutica San Antonio", - "Hospital De Alta Resolución De Benalmádena", - "Hospital Quironsalud Málaga", - "Cenyt Hospital", - "Clínica Ochoa", - "Centro De Reproducción Asistida De Marbella (Ceram)", - "Helicópteros Sanitarios Hospital", - "Hospital De La Serranía", - "Hospital Valle Del Guadalhorce De Cártama", - "Hospital Clínico Universitario Virgen De La Arrixaca", - "Hospital General Universitario Reina Sofía", - "Plataforma de Medicina Computacional, Fundación Progreso y Salud", - "Hospital Psiquiátrico Roman Alberca", - "Hospital Quirónsalud Murcia", - "Hospital La Vega", - "Hospital Mesa Del Castillo", - "Sanatorio Doctor Muñoz S.L.", - "Clínica Médico-Quirúrgica San José, S.A.", - "Hospital Comarcal Del Noroeste", - "Clínica Doctor Bernal S.L.", - "Hospital Santa María Del Rosell", - "Santo Y Real Hospital De Caridad", - "Hospital Nuestra Señora Del Perpetuo Socorro", - "Fundacion Hospital Real Piedad", - "Hospital Virgen Del Alcázar De Lorca", - "Hospital General Universitario Los Arcos Del Mar Menor", + "Hospital Universitario Virgen De Las Nieves", + "Hospital Universitario Virgen De Valme", + "Hospital Universitario Virgen Del Rocio", + "Hospital Universitario Virgen Macarena", + "Hospital Universitario Vithas Las Palmas", + "Hospital Universitario Y Politecnico La Fe", + "Hospital Urduliz Ospitalea", + "Hospital Valle De Guadalhorce De Cartama", + "Hospital Valle De Laciana", + "Hospital Valle De Los Pedroches", + "Hospital Valle Del Nalon", + "Hospital Vazquez Diaz", + "Hospital Vega Baja De Orihuela", + "Hospital Viamed Bahia De Cadiz", + "Hospital Viamed Montecanal", + "Hospital Viamed Novo Sancti Petri", + "Hospital Viamed San Jose", + "Hospital Viamed Santa Angela De La Cruz", + "Hospital Viamed Santa Elena, S.L", + "Hospital Viamed Santiago", + "Hospital Viamed Tarragona", + "Hospital Victoria Eugenia De La Cruz Roja Española", + "Hospital Virgen De Altagracia", + "Hospital Virgen De La Bella", + "Hospital Virgen De La Concha Complejo Asistencial De Zamora", + "Hospital Virgen De La Luz", + "Hospital Virgen De La Torre", + "Hospital Virgen De Las Montañas", + "Hospital Virgen De Los Lirios", + "Hospital Virgen Del Alcazar De Lorca", + "Hospital Virgen Del Camino", "Hospital Virgen Del Castillo", - "Hospital Rafael Méndez", - "Hospital General Universitario J.M. Morales Meseguer", - "Hospital Ibermutuamur-Patología Laboral", - "Hospital De La Vega Lorenzo Guirao", - "Hospital De Molina", - "Clínica San Felipe Del Mediterráneo", - "Hospital De Cuidados Medios Villademar", - "Residencia Los Almendros", - "Complejo Hospitalario Universitario De Cartagena", - "Hospital General Universitario Santa Lucia", - "Consorcio LUCIA (SACYL,ITACYL UBU,UVa)", - "Hospital Perpetuo Socorro Alameda", - "Hospital C.M.V. Caridad Cartagena", - "Centro San Francisco Javier", - "Clinica Psiquiatrica Padre Menni", - "Clinica Universidad De Navarra", - "CATLAB", - "Clinica San Miguel", - "Clínica San Fermín", - "Centro Hospitalario Benito Menni", - "Hospital García Orcoyen", - "Hospital Reina Sofía", - "Clínica Psicogeriátrica Josefina Arregui", - "Complejo Hospitalario De Navarra", - "Complexo Hospitalario Universitario De Ourense", - "Hospital Universitario Cristal", - "Hospital Santo Cristo De Piñor (Psiquiatrico)", - "Hospital Santa Maria Nai", - "Centro Medico El Carmen", - "Hospital De Valdeorras", - "Hospital De Verin", - "Clinica Santa Teresa", - "Hospital Monte Naranco", - "Centro Médico De Asturias", - "Clínica Asturias", - "Clínica San Rafael", - "Hospital Universitario San Agustín", - "Fundación Hospital De Avilés", - "Hospital Carmen Y Severo Ochoa", - "Hospital Comarcal De Jarrio", - "Hospital De Cabueñes", - "Sanatorio Nuestra Señora De Covadonga", - "Fundación Hospital De Jove", - "Hospital Begoña De Gijón, S.L.", - "Hospital Valle Del Nalón", - "Fundació Fisabio", - "Fundación Sanatorio Adaro", - "Hospital V. Álvarez Buylla", - "Hospital Universitario Central De Asturias", - "Hospital Del Oriente De Asturias Francisco Grande Covián", - "Hospital De Luarca -Asistencia Médica Occidentalsl", - "Instituto Salud Mental Pérez-Espinosa Oria, S.L.", - "Clínica Psiquiátrica Somió", - "Clínica Cirugía Plástica Y Estética Fernández Y Fernández Cossío", - "Hospital Gijón", - "Centro Terapéutico Vista Alegre", - "Instituto Oftalmológico Fernández -Vega", - "Hospital Rio Carrión", - "Hospital San Telmo", - "Hospital Psiquiatrico San Luis", - "Área Psiquiátrica Del Centro Asistencial San Juan De Dios", - "Hospital Recoletas De Palencia", - "Complejo Asistencial Universitario De Palencia", - "Hospital Universitario Materno-Infantil De Canarias", - "Hospital Universitario Insular De Gran Canaria", - "Unidades Clínicas Y De Rehabilitación (Ucyr)", - "Sanatorio Dermatológico Regional", - "Fundación Benéfica Canaria Casa Asilo San José", - "Vithas Hospital Santa Catalina", - "Hospital Policlínico La Paloma, S.A.", - "Instituto Policlínico Cajal, S.L.", - "Hospital San Roque Las Palmas De Gran Canaria", - "Clínica Bandama", - "Hospital Doctor José Molina Orosa", - "Hospital Insular De Lanzarote", - "Hospital General De Fuerteventura", - "Quinta Médica De Reposo, S.A.", - "Hospital De San Roque Guía", - "Hospital Ciudad De Telde", - "Complejo Hospitalario Universitario Insular-Materno Infantil", - "Hospital Clínica Roca (Roca Gestión Hospitalaria)", - "Hospital Universitario De Gran Canaria Dr. Negrín", - "Hospiten Lanzarote (Clínicas Del Sur S.L.U.)", - "Complejo Hospitalario Universitario De Gran Canaria Dr. Negrín", - "Hospital San Roque Maspalomas", - "Clínica Parque Fuerteventura", - "Clinica Jorgani", - "Hospital Universitario Montecelo", - "Gerencia de Atención Primaria Pontevedra Sur", - "Hospital Provincial De Pontevedra", - "Hestia Santa Maria", - "Hospital Quironsalud Miguel Dominguez", - "Instituto De Neuro-Rehabilitacion Quironsalud Pontevedra", - "Hospital Meixoeiro", - "Hospital Nicolas Peña", - "Fremap, Hospital De Vigo", - "Hospital Povisa", - "Hospital Hm Vigo", - "Vithas Hospital Nosa Señora De Fatima", - "Concheiro Centro Medico Quirurgico", - "Centro Medico Pintado", - "Sanatorio Psiquiatrico San Jose", - "Clinica Residencia El Pinar", - "Complexo Hospitalario Universitario De Pontevedra", - "Hospital Do Salnes", - "Complexo Hospitalario Universitario De Vigo", - "Hospital Universitario Alvaro Cunqueiro", - "Plataforma de Genómica y Bioinformática", - "Complejo Asistencial Universitario De Salamanca", - "Hospital Universitario De Salamanca", - "Hospital General De La Santísima Trinidad", - "Hospital Los Montalvos", - "Complejo Hospitalario Universitario Ntra. Sra. De Candelaria", - "Hospital Universitario Nuestra Señora De Candelaria", - "Hospital De Ofra", + "Hospital Virgen Del Mar", + "Hospital Virgen Del Miron ,Complejo Asistencial De Soria", + "Hospital Virgen Del Puerto", + "Hospital Vital Alvarez Buylla", + "Hospital Vithas Castellon", + "Hospital Vithas Granada", + "Hospital Vithas Parque San Antonio", + "Hospital Vithas Sevilla", + "Hospital Vithas Valencia Consuelo", + "Hospital Vithas Vitoria", + "Hospital Vithas Xanit Estepona", + "Hospital Vithas Xanit Internacional", + "Hospiten Clinica Roca San Agustin", + "Hospiten Lanzarote", + "Idcsalud Mostoles Sa", + "Imed Valencia", + "Institut Catala D'Oncologia - Hospital Duran I Reynals", + "Institut Catala D'Oncologia - Hospital Germans Trias I Pujol", + "Institut Catala D'Oncologia Girona - Hospital Josep Trueta", + "Institut Guttmann", + "Institut Pere Mata, S.A", + "Instituto De Enfermedades Neurologicas De Castilla-La Mancha", + "Instituto De Salud Carlos Iii - Centro Nacional De Microbiologia", + "Instituto De Traumatologia De Union De Mutuas (Matepss Nº 267)", + "Instituto Oftalmologico Fernandez-Vega", + "Instituto Provincial De Rehabilitacion", "Instituto Tecnológico y de Energías Renovables, S.A. (ITER, S.A.)", - "Unidades Clínicas Y De Rehabilitación De Salud Mental", - "Hospital Febles Campos", - "Hospital Quirón Tenerife", - "Vithas Hospital Santa Cruz", - "Clínica Parque, S.A.", - "Hospiten Sur", - "Hospital Universitario De Canarias (H.U.C)", - "Hospital De La Santísima Trinidad", - "Clínica Vida", - "Hospital Bellevue", - "Hospital Nuestra Señora De Guadalupe", - "Hospital Nuestra Señora De Los Dolores", - "Hospital Insular Ntra. Sra. De Los Reyes", - "Hospital Quirón Costa Adeje", - "Hospital Rambla S.L.", - "Hospital General De La Palma", - "Complejo Hospitalario Universitario De Canarias", - "Hospital Del Norte", - "Hospital Del Sur", - "Clínica Tara", - "Hospital Universitario Marqués De Valdecilla", - "Hospital Ramón Negrete", - "Hospital Santa Clotilde - Orden Hospitalaria San Juan De Dios.", - "Centro Hospitalario Padre Menni", - "Hospital Comarcal De Laredo", - "Hospital Sierrallana", - "Clínica Mompía, S.A.U.", - "Complejo Asistencial De Segovia", - "Hospital General De Segovia", - "Hospital Recoletas Segovia Ntra. Sra. De La Misericordia", - "Unidad De Rehabilitación Psiquiátrica Ntra. Sra. De La Fuencisla", - "Hospital General Del H.U. Virgen Del Rocío", - "Hospital Virgen De Valme", - "Hospital Virgen Macarena", - "Hospital San Lázaro", - "Hospital Victoria Eugenia De La Cruz Roja Española", - "Hospital San Juan De Dios De Sevilla", - "Hospital Duques Del Infantado", - "Clínica Santa Isabel", - "Hospital Quironsalud Sagrado Corazón", - "Hospital Fátima", - "Hospital Quironsalud Infanta Luisa", - "Clínica Nuestra Señora De Aránzazu", - "Residencia De Salud Mental Nuestra Señora Del Carmen", - "Hospital El Tomillar", - "Hospital De Alta Resolución De Morón De La Frontera", - "Hospital La Merced", - "Hospital Universitario Virgen Del Rocío", + "Ita Canet", + "Ita Clinic Bcn", + "Ita Godella", + "Ita Maresme", + "Ivan Mañero Clinic", + "Juaneda Miramar", + "Lab Clínic ICS Camp de Tarragona-Terres de l'Ebre. Hospital Joan XXIII", + "Laboratori De Referencia De Catalunya", + "Laboratorio Echevarne, Sa", + "Lepant Residencial Qgg, Sl", + "Microbiología HUC San Cecilio", "Microbiología. Hospital Universitario Virgen del Rocio", - "Hospital Universitario Virgen Macarena", - "Hospital Universitario Virgen De Valme", - "Fremap, Hospital Y Centro De Rehabilitación De Sevilla", - "Hospital Psiquiátrico Penitenciario", - "Hospital San Juan De Dios Del Aljarafe", - "Hospital Nisa Sevilla-Aljarafe", - "Hospital De Alta Resolución De Utrera", - "Hospital De Alta Resolución Sierra Norte", - "Hospital Viamed Santa Ángela De La Cruz", - "Hospital De Alta Resolución De Écija", - "Clínica De Salud Mental Miguel De Mañara", - "Hospital De Rehabilitación Y Traumatología Virgen Del Rocío", - "Hospital De Alta Resolución De Lebrija", - "Hospital Infantil", - "Hospital De La Mujer", - "Hospital Virgen Del Mirón", - "Complejo Asistencial De Soria", - "Hospital Universitari Joan Xxiii De Tarragona", - "Hospital Sociosanitari Francolí", - "Hospital De Sant Pau I Santa Tecla", - "Hospital Viamed Monegal", - "Clínica Activa Mútua 2008", - "Hospital Comarcal Móra D'Ebre", - "Hospital Universitari De Sant Joan De Reus", - "Centre Mq Reus", - "Villablanca Serveis Assistencials, Sa", - "Institut Pere Mata, S.A", - "Hospital De Tortosa Verge De La Cinta", - "Clínica Terres De L'Ebre", - "Policlínica Comarcal Del Vendrell.", + "Ministerio Sanidad", + "Mutua Balear", + "Mutua De Granollers, Mutua De Previsio Social A Prima Fixa", + "Mutualia Clinica Pakea", + "Nou Hospital Evangelic", + "Organizacion Sanitaria Integrada Debagoiena", + "Parc Sanitari Sant Joan De Deu - Numancia", + "Parc Sanitari Sant Joan De Deu - Recinte Sant Boi.", + "Parc Sanitari Sant Joan De Deu - Til·Lers", + "Parc Sanitari Sant Joan De Deu - Uhpp - 1", + "Parc Sanitari Sant Joan De Deu - Uhpp - 2", "Pius Hospital De Valls", - "Residència Alt Camp", - "Centre Sociosanitari Ciutat De Reus", - "Hospital Comarcal D'Amposta", - "Centre Sociosanitari Llevant", - "Residència Vila-Seca", - "Unitat Polivalent En Salut Mental D'Amposta", - "Hospital Del Vendrell", - "Centre Sociosanitari I Residència Assistida Salou", - "Residència Santa Tecla Ponent", - "Unitat De Referència De Psiquiatria I Trastorns De La Conducta Alimentària (Urpi)", - "Hospital Obispo Polanco", - "Centro De Rehabilitacion Psicosocial San Juan De Dios", - "Hospital De Alcañiz", - "Hospital Virgen De La Salud", - "Hospital Geriátrico Virgen Del Valle", - "Hospital Nacional De Parapléjicos", - "Hospital Provincial Nuestra Señora De La Misericordia", - "Hospital General Nuestra Señora Del Prado", - "Consejería de Sanidad", - "Clínica Marazuela, S.A.", - "Complejo Hospitalario De Toledo", - "Hospital Laboral Solimat Mutua Colaboradora Con La Ss Nº 72", - "Quirón Salud Toledo", - "Hospital Universitario Y Politécnico La Fe", - "Hospital Universitario Dr. Peset Aleixandre", - "Hospital Arnau De Vilanova", - "Hospital Clínico Universitario De Valencia", - "Hospital De La Malva-Rosa", - "Consorcio Hospital General Universitario De Valencia", - "Hospital Católico Casa De Salud", - "Hospital Nisa Valencia Al Mar", - "Fundación Instituto Valenciano De Oncología", - "Hospital Virgen Del Consuelo", - "Hospital Quirón Valencia", - "Hospital Psiquiátrico Provincial", - "Casa De Reposo San Onofre", - "Hospital Francesc De Borja De Gandia", - "Hospital Lluís Alcanyís De Xàtiva", - "Hospital General De Ontinyent", - "Hospital Intermutual De Levante", - "Hospital De Sagunto", - "Hospital Doctor Moliner", - "Hospital General De Requena", - "Hospital 9 De Octubre", - "Centro Médico Gandia", - "Hospital Nisa Aguas Vivas", - "Clinica Fontana", - "Hospital Universitario De La Ribera", - "Hospital Pare Jofré", - "Hospital De Manises", - "Hospital De Crónicos De Mislata (Antiguo Hospital Militar De Valencia)", - "Hospital De Llíria", - "Imed Valencia", - "Unidad De Desintoxicación Hospitalaria", - "Hospital Universitario Rio Hortega", - "Hospital Clínico Universitario De Valladolid", - "Sanatorio Sagrado Corazón", - "Hospital Medina Del Campo", - "Hospital De Valladolid Felipe Ii", - "Hospital Campo Grande", - "Hospital Santa Marina", - "Hospital Intermutual De Euskadi", - "Clínica Ercilla Mutualia", - "Hospital Cruz Roja De Bilbao", - "Sanatorio Bilbaíno", - "Hospital De Basurto", - "Imq Clínica Virgen Blanca", - "Clínica Guimon S.A.", - "Clínica Indautxu", - "Hospital Universitario De Cruces", - "Osi Barakaldo-Sestao", - "Hospital San Eloy", - "Red De Salud Mental De Bizkaia (Hospital De Bermeo)", - "Hospital Galdakao-Usansolo", - "Hospital Gorliz", - "Red De Salud Mental De Bizkaia (Hospital De Zaldibar)", - "Red De Salud Mental De Bizkaia (Hospital De Zamudio)", - "Avances Médicos S.A", - "Hospital Quironsalud Bizkaia", - "Clínica Imq Zorrotzaurre", - "Hospital Urduliz Ospitalea", - "Hospital Virgen De La Concha", - "Hospital Provincial De Zamora", - "Hospital De Benavente", - "Complejo Asistencial De Zamora", - "Hospital Recoletas De Zamora", - "Hospital Clínico Universitario Lozano Blesa", - "Hospital Universitario Miguel Servet", - "Hospital Royo Villanova", - "Centro de Investigación Biomédica de Aragón", - "Centro De Rehabilitacion Psicosocial Nuestra Señora Del Pilar", - "Hospital Nuestra Señora De Gracia", - "Hospital Maz", - "Clínica Montpelier Grupo Hla, S.A.U", - "Centro Neuropsiquiátrico Nuestra Señora Del Carmen", - "Hospital Quironsalud Zaragoza", - "Clínica Nuestra Señora Del Pilar", - "Hospital General De La Defensa De Zaragoza", - "Hospital Ernest Lluch Martin", + "Plataforma de Genómica y Bioinformática", + "Plataforma de Medicina Computacional, Fundación Progreso y Salud", + "Policlinica Comarcal Del Vendrell.", + "Policlinica Gipuzkoa", + "Policlinica Nuestra Sra. Del Rosario", + "Policlinico Riojano Nuestra Señora De Valvanera", + "Presidencia del Gobierno", + "Prytanis Hospitalet Centre Sociosanitari", + "Prytanis Sant Boi Centre Sociosanitari", + "Quinta Medica De Reposo", + "Red De Salud Mental De Araba (Hospital Psiquiatrico De Araba)", + "Residencia Alt Camp", + "Residencia De Gent Gran Puig D'En Roca", + "Residencia De Salud Mental Nuestra Se?Ora Del Carmen", + "Residencia Geriatrica Maria Gay", + "Residencia L'Estada", + "Residencia Puig-Reig", + "Residencia Santa Susanna", + "Residencia Santa Tecla Ponent", + "Residencia Terraferma", + "Residencia Vila-Seca", + "Ribera Hospital De Molina", + "Ronda De Dalt, Centre Sociosanitari", + "Sanatorio Bilbaino", + "Sanatorio Dr. Muñoz", + "Sanatorio Esquerdo, S.A.", + "Sanatorio Nuestra Señora Del Rosario", + "Sanatorio Sagrado Corazon", + "Sanatorio San Francisco De Borja Fontilles", + "Sanatorio Usurbil, S. L.", + "Santo Y Real Hospital De Caridad", + "Sar Mont Marti", + "Serveis Clinics, S.A.", + "Servicio Madrileño De Salud", + "Servicio de Microbiologia HU Son Espases", + "Servicios Sanitarios Y Asistenciales", + "U.R.R. De Enfermos Psiquicos Alcohete", "Unidad De Rehabilitacion De Larga Estancia", "Unidad Rehabilitadora De Media Estancia Profesor Rey Ardid", - "Hospital De Rehabilitacion Psiquiatrica Prisma", - "Centro Sanitario Cinco Villas", - "Hospital Viamed Montecanal", - "Hospital Universitario De Ceuta", - "Hospital Comarcal de Melilla", - "Presidencia del Gobierno", - "Ministerio Sanidad" + "Unidades Clinicas Y De Rehabilitacion De Salud Mental", + "Unitat Polivalent Benito Menni En Salut Mental De L'Hospitalet-El Prat De Llobregat", + "Unitat Polivalent En Salut Mental D'Amposta", + "Unitat Polivalent Salut Mental Barcelona-Nord", + "Unitat Terapeutica-Educativa Acompanya'M", + "Villablanca Serveis Assistencials, Sa", + "Vithas Hospital Montserrat", + "Vithas Hospital Nosa Señora De Fatima", + "Vithas Hospital Perpetuo Internacional", + "Vithas Hospital Santa Cruz" ] }, "purpose_sampling": { diff --git a/relecov_tools/validate.py b/relecov_tools/validate.py index 2e41ef599..27fbc8ad6 100755 --- a/relecov_tools/validate.py +++ b/relecov_tools/validate.py @@ -40,6 +40,7 @@ def __init__( ): """Validate json file against the schema""" super().__init__(output_dir=output_dir, called_module=__name__) + self.config = ConfigJson(extra_config=True) self.log.info("Initiating validation process") # Check and load config params From 5d97296e86dc6b5665fc9707360c132f6a3d2cc0 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Mon, 23 Feb 2026 12:31:53 +0100 Subject: [PATCH 12/15] Fix relecov_schema.json --- relecov_tools/build_schema.py | 16 ++++++--- relecov_tools/schema/relecov_schema.json | 42 +++++++++++++----------- 2 files changed, 34 insertions(+), 24 deletions(-) diff --git a/relecov_tools/build_schema.py b/relecov_tools/build_schema.py index 7481ef97f..24e8ac431 100644 --- a/relecov_tools/build_schema.py +++ b/relecov_tools/build_schema.py @@ -222,6 +222,11 @@ def _load_laboratory_addresses(self): Returns two dictionaries with key in the three special fields: - dropdowns[field] ........ list ‘ [] []’ - uniques[field] .......... unique names for schema enum + + NOTE: + For RELECOV, laboratory_address.json stores institution names under + `collecting_institution`. We intentionally reuse that same source for + collecting/submitting/sequencing to keep the three schema enums aligned. """ json_path = os.path.join( os.path.dirname(__file__), @@ -241,12 +246,13 @@ def _load_laboratory_addresses(self): for ccn, info in lab_data.items(): city = info.get("geo_loc_city", "").strip() - + name = info.get("collecting_institution", "").strip() + if not name: + continue + dropdown_entry = f"{name} [{city}] [{ccn}]" for f in fields: - name = info.get(f, "").strip() - if name: - dropdowns[f].append(f"{name} [{city}] [{ccn}]") - uniques[f].add(name) + dropdowns[f].append(dropdown_entry) + uniques[f].add(name) dropdowns = {k: sorted(v) for k, v in dropdowns.items()} uniques = {k: sorted(v) for k, v in uniques.items()} diff --git a/relecov_tools/schema/relecov_schema.json b/relecov_tools/schema/relecov_schema.json index 946d9178e..43cf7688e 100644 --- a/relecov_tools/schema/relecov_schema.json +++ b/relecov_tools/schema/relecov_schema.json @@ -147,7 +147,7 @@ "ontology": "GENEPIO:0001159", "description": "The name of the agency that submitted the sequence to the platform.", "examples": [ - "Instituto de Salud Carlos III " + "Instituto De Salud Carlos Iii - Centro Nacional De Microbiologia [Majadahonda] [1328021542]" ], "$ref": "#/$defs/enums/submitting_institution", "classification": "Sample collection and processing", @@ -160,7 +160,7 @@ "ontology": "GENEPIO:0100416", "description": "The name of the agency that generated the sequence", "examples": [ - "Instituto de Salud Carlos III " + "Instituto De Salud Carlos Iii - Centro Nacional De Microbiologia [Majadahonda] [1328021542]" ], "$ref": "#/$defs/enums/sequencing_institution", "classification": "Sequencing", @@ -1281,7 +1281,9 @@ "label": "processing_date", "ontology": "OBI:0002471", "description": "The time of a sample analysis process YYYY-MM-DD", - "examples": ["2022-07-15"], + "examples": [ + "2022-07-15" + ], "classification": "Bioinformatics and QC metrics fields", "type": "string", "format": "date", @@ -2174,7 +2176,7 @@ "ontology": "NCIT:C164483", "description": "The date on which the activity or entity is created.", "examples": [ - "e.g 2020-08-07" + "2020-08-07" ], "classification": "Public databases", "type": "string", @@ -2570,28 +2572,28 @@ } }, "required": [ - "enrichment_panel_version", "sequence_file_R1", - "sequencing_sample_id", - "library_layout", - "library_source", - "sequencing_instrument_model", - "collecting_institution_code_2", + "host_scientific_name", + "geo_loc_country", + "collecting_lab_sample_id", "isolate_sample_id", + "geo_loc_state", + "sample_collection_date", + "library_layout", "organism", - "collecting_institution_code_1", - "host_common_name", - "submitting_institution", - "collecting_lab_sample_id", + "sequencing_sample_id", + "library_source", "collecting_institution", - "geo_loc_state", - "geo_loc_country", "library_strategy", - "enrichment_panel", + "submitting_institution", "sequencing_instrument_platform", "geo_loc_state_cod", - "sample_collection_date", - "host_scientific_name" + "sequencing_instrument_model", + "collecting_institution_code_1", + "host_common_name", + "enrichment_panel_version", + "enrichment_panel", + "collecting_institution_code_2" ], "$defs": { "enums": { @@ -5758,6 +5760,8 @@ "Illumina Respiratory Pathogen ID/AMR Enrichment Panel", "Illumina Viral Surveillance Panel v2", "Twist Bioscience Respiratory Virus Research Panel", + "Universal Influenza A primers (Zhou 2012 protocol)", + "Universal Influenza B primers (Zhou 2014 protocol)", "Other [NCIT:C17649]" ] }, From d7f22a0b96045383c8b3156188e1320b582ff241 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Mon, 23 Feb 2026 12:38:52 +0100 Subject: [PATCH 13/15] Update build-schema to apply types to examples in schema --- relecov_tools/build_schema.py | 60 ++++++++++++++++-- relecov_tools/schema/relecov_schema.json | 80 ++++++++++++------------ 2 files changed, 95 insertions(+), 45 deletions(-) diff --git a/relecov_tools/build_schema.py b/relecov_tools/build_schema.py index 24e8ac431..13e4b581a 100644 --- a/relecov_tools/build_schema.py +++ b/relecov_tools/build_schema.py @@ -461,8 +461,47 @@ def create_schema_draft_template(self): ) return draft_template + @staticmethod + def _cast_example_to_type(expected_type: str | None, value: any) -> any: + """Cast a single example value to the declared JSON-schema type when possible.""" + if not isinstance(expected_type, str): + return value + expected = expected_type.strip().lower() + if expected == "string": + return str(value) + if expected == "integer": + try: + return int(float(value)) + except (TypeError, ValueError): + return value + if expected == "number": + try: + return float(value) + except (TypeError, ValueError): + return value + if expected == "boolean": + if isinstance(value, bool): + return value + if isinstance(value, str): + normalized = value.strip().lower() + if normalized in ("true", "1", "yes", "y"): + return True + if normalized in ("false", "0", "no", "n"): + return False + return value + return value + + def _cast_examples_to_declared_type( + self, expected_type: str | None, values: list[any] + ) -> list[any]: + return [self._cast_example_to_type(expected_type, item) for item in values] + def jsonschema_object( - self, property_id: str, property_feature_key: str, value: any + self, + property_id: str, + property_feature_key: str, + value: any, + expected_type: str | None = None, ) -> dict[str, any]: """ Process a property keyword with their value and return a dictionary with fields for a property. @@ -493,15 +532,25 @@ def jsonschema_object( jsonschema_value[key] = value # FIXME multiple examples will always be loaded as str, regardless of actual type case "examples", str(value): - jsonschema_value = {property_feature_key: value.split("; ")} + parsed_examples = value.split("; ") + parsed_examples = self._cast_examples_to_declared_type( + expected_type, parsed_examples + ) + jsonschema_value = {property_feature_key: parsed_examples} case "examples", datetime(): value = value.strftime("%Y-%m-%dT%H:%M:%S") value = value.replace("T00:00:00", "") - jsonschema_value = {property_feature_key: [value]} + parsed_examples = self._cast_examples_to_declared_type( + expected_type, [value] + ) + jsonschema_value = {property_feature_key: parsed_examples} case "examples", int(value) | float(value): value = float(value) - value = [int(value) if value.is_integer() else value] - jsonschema_value = {property_feature_key: value} + parsed_examples = [int(value) if value.is_integer() else value] + parsed_examples = self._cast_examples_to_declared_type( + expected_type, parsed_examples + ) + jsonschema_value = {property_feature_key: parsed_examples} case "enum", str(): jsonschema_value = {"$ref": f"#/$defs/enums/{property_id}"} case _, value if not pd.isna(value): @@ -583,6 +632,7 @@ def handle_properties(self, json_data: dict[str, dict]) -> tuple[dict, dict, dic property_id, mapping_features[db_feature_key], db_feature_value, + expected_type=db_features_dic.get("type"), ) if std_json_feature: schema_property[property_id].update(std_json_feature) diff --git a/relecov_tools/schema/relecov_schema.json b/relecov_tools/schema/relecov_schema.json index 43cf7688e..a9dad82b7 100644 --- a/relecov_tools/schema/relecov_schema.json +++ b/relecov_tools/schema/relecov_schema.json @@ -37,7 +37,7 @@ "ontology": "GENEPIO:0001123", "description": "Sample ID provided by the laboratory that collects the sample, the collecting institution is requested in column L of this file", "examples": [ - 1197677 + "1197677" ], "classification": "Database Identifiers", "type": "string", @@ -49,7 +49,7 @@ "ontology": "GENEPIO:0001148", "description": "Sample ID provided by the submitting laboratory that delivers the sample. The submitting laboratory is requested in column M", "examples": [ - 202203144 + "202203144" ], "classification": "Sequencing", "type": "string", @@ -61,7 +61,7 @@ "ontology": "0", "description": "Sample identification provided by the microbiology laboratory", "examples": [ - 220624 + "220624" ], "classification": "Sample collection and processing", "type": "string", @@ -73,7 +73,7 @@ "ontology": "GENEPIO:0001644", "description": "Sample identification provided if multiple rna-extraction or passages", "examples": [ - 220624.1 + "220624.1" ], "classification": "Database Identifiers", "type": "string", @@ -639,7 +639,7 @@ "ontology": "GENEPIO:0001509", "description": "The Ct value result from a diagnostic SARS-CoV-2 RT-PCR test.", "examples": [ - 40 + 40.0 ], "classification": "Pathogen diagnostic testing", "type": "number", @@ -666,7 +666,7 @@ "ontology": "GENEPIO:0001512", "description": "The cycle threshold (CT) value result from a diagnostic SARS-CoV-2 RT-PCR test.", "examples": [ - 40 + "40" ], "classification": "Pathogen diagnostic testing", "type": "string", @@ -728,7 +728,7 @@ "ontology": "NCIT:C104504", "description": "Unique identifier for each analysis batch", "examples": [ - 20250506140633 + "20250506140633" ], "classification": "Sample collection and processing", "type": "string", @@ -752,7 +752,7 @@ "ontology": "SNOMED:423901009", "description": "CCN code from the agency/institution that collected the sample.", "examples": [ - 1328021542 + "1328021542" ], "classification": "Sample collection and processing", "type": "string", @@ -764,7 +764,7 @@ "ontology": "NCIT:C101703", "description": "CODCNH code from the agency/institution that collected the sample.", "examples": [ - 40059 + "40059" ], "classification": "Sample collection and processing", "type": "string", @@ -800,7 +800,7 @@ "ontology": "GENEPIO:0001803", "description": "Autonomic center Code", "examples": [ - 11380 + "11380" ], "classification": "Sample collection and processing", "type": "string", @@ -862,7 +862,7 @@ "ontology": "NCIT:C218832", "description": "Official Code of the state/province/territory of origin of the sample.", "examples": [ - 1 + "1" ], "classification": "Sample collection and processing", "type": "string", @@ -887,7 +887,7 @@ "ontology": 0, "description": "Official Code of the county/region of origin of the sample.", "examples": [ - 4 + "4" ], "classification": "Sample collection and processing", "type": "string", @@ -911,7 +911,7 @@ "ontology": 0, "description": "Official Code of the city of origin of the sample.", "examples": [ - 40139 + "40139" ], "classification": "Sample collection and processing", "type": "string", @@ -923,7 +923,7 @@ "ontology": "NCIT:C25621", "description": "Post Code of the agency/institution that collected the sample.", "examples": [ - 4120 + "4120" ], "classification": "Sample collection and processing", "type": "string", @@ -995,7 +995,7 @@ "ontology": "NCIT:C40978", "description": "Phone of the agency/institution that collected the sample.", "examples": [ - 950016114 + "950016114" ], "classification": "Sample collection and processing", "type": "string", @@ -1184,7 +1184,7 @@ "ontology": "NCIT:C153362", "description": "Number of base pairs per read", "examples": [ - "75" + 75 ], "classification": "Sequencing", "type": "integer", @@ -1198,7 +1198,7 @@ "ontology": "NCIT:C153362", "description": "The number of nucleotides successfully ordered from each side of a nucleic acid fragment obtained after the completion of a sequencing process.", "examples": [ - "75" + 75 ], "classification": "Sequencing", "type": "integer", @@ -1728,7 +1728,7 @@ "ontology": "NCIT:C164667", "description": "The number of total reads generated by the sequencing process.", "examples": [ - "387566" + 387566 ], "classification": "Bioinformatics and QC metrics fields", "type": "integer", @@ -1812,7 +1812,7 @@ "ontology": "0", "description": "Percentage of genome with coverage greater than 10x", "examples": [ - 96 + 96.0 ], "classification": "Bioinformatics and QC metrics fields", "type": "number", @@ -1826,7 +1826,7 @@ "ontology": "0", "description": "Percentage of Ns", "examples": [ - 3 + 3.0 ], "classification": "Bioinformatics and QC metrics fields", "type": "number", @@ -1854,7 +1854,7 @@ "ontology": "GENEPIO:0001484", "description": "The number of N symbols present in the consensus fasta sequence, per 100kbp of sequence.", "examples": [ - "300" + 300.0 ], "classification": "Bioinformatics and QC metrics fields", "type": "number", @@ -1924,7 +1924,7 @@ "ontology": "GENEPIO:0001457", "description": "Percentage of Lineage Defining Mutations", "examples": [ - 98 + 98.0 ], "classification": "Bioinformatics and QC metrics fields", "type": "number", @@ -1938,7 +1938,7 @@ "ontology": "GENEPIO:0001457", "description": "Percentage of sSgene ambiguous bases", "examples": [ - 0 + 0.0 ], "classification": "Bioinformatics and QC metrics fields", "type": "number", @@ -1952,7 +1952,7 @@ "ontology": "GENEPIO:0001457", "description": "Percentage of Sgene coverage", "examples": [ - 99 + 99.0 ], "classification": "Bioinformatics and QC metrics fields", "type": "number", @@ -2322,7 +2322,7 @@ "ontology": "LOINC:40783184", "description": "Date when the clade analysis was performed via Nextclade", "examples": [ - 20241204 + "20241204" ], "classification": "Genomic Typing fields", "type": "string", @@ -2419,7 +2419,7 @@ "ontology": "LOINC:40783184", "description": "Date when the lineage analysis was performed", "examples": [ - 20241204 + "20241204" ], "classification": "Genomic Typing fields", "type": "string", @@ -2572,28 +2572,28 @@ } }, "required": [ - "sequence_file_R1", + "isolate_sample_id", + "collecting_institution_code_2", "host_scientific_name", - "geo_loc_country", + "library_source", + "sequencing_instrument_model", "collecting_lab_sample_id", - "isolate_sample_id", - "geo_loc_state", - "sample_collection_date", - "library_layout", - "organism", + "collecting_institution_code_1", "sequencing_sample_id", - "library_source", - "collecting_institution", - "library_strategy", + "geo_loc_country", "submitting_institution", "sequencing_instrument_platform", + "enrichment_panel_version", "geo_loc_state_cod", - "sequencing_instrument_model", - "collecting_institution_code_1", "host_common_name", - "enrichment_panel_version", + "collecting_institution", + "library_layout", + "organism", + "library_strategy", + "sequence_file_R1", "enrichment_panel", - "collecting_institution_code_2" + "geo_loc_state", + "sample_collection_date" ], "$defs": { "enums": { From bd366b1ed68216d30739c36afa456ea4e72a4367 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Mon, 23 Feb 2026 12:52:37 +0100 Subject: [PATCH 14/15] Add log.warning to cast to type in build-schema --- relecov_tools/build_schema.py | 43 ++++++++++++++++++++++++++++------- 1 file changed, 35 insertions(+), 8 deletions(-) diff --git a/relecov_tools/build_schema.py b/relecov_tools/build_schema.py index 13e4b581a..53e0fba2c 100644 --- a/relecov_tools/build_schema.py +++ b/relecov_tools/build_schema.py @@ -461,8 +461,9 @@ def create_schema_draft_template(self): ) return draft_template - @staticmethod - def _cast_example_to_type(expected_type: str | None, value: any) -> any: + def _cast_example_to_type( + self, property_id: str, expected_type: str | None, value: any + ) -> any: """Cast a single example value to the declared JSON-schema type when possible.""" if not isinstance(expected_type, str): return value @@ -471,13 +472,31 @@ def _cast_example_to_type(expected_type: str | None, value: any) -> any: return str(value) if expected == "integer": try: - return int(float(value)) + parsed_number = float(value) except (TypeError, ValueError): + self.log.warning( + "Example value %r for property '%s' does not match expected type 'integer'. Keeping original value.", + value, + property_id, + ) + return value + if not parsed_number.is_integer(): + self.log.warning( + "Example value %r for property '%s' does not match expected type 'integer'. Keeping original value.", + value, + property_id, + ) return value + return int(parsed_number) if expected == "number": try: return float(value) except (TypeError, ValueError): + self.log.warning( + "Example value %r for property '%s' does not match expected type 'number'. Keeping original value.", + value, + property_id, + ) return value if expected == "boolean": if isinstance(value, bool): @@ -488,13 +507,21 @@ def _cast_example_to_type(expected_type: str | None, value: any) -> any: return True if normalized in ("false", "0", "no", "n"): return False + self.log.warning( + "Example value %r for property '%s' does not match expected type 'boolean'. Keeping original value.", + value, + property_id, + ) return value return value def _cast_examples_to_declared_type( - self, expected_type: str | None, values: list[any] + self, property_id: str, expected_type: str | None, values: list[any] ) -> list[any]: - return [self._cast_example_to_type(expected_type, item) for item in values] + return [ + self._cast_example_to_type(property_id, expected_type, item) + for item in values + ] def jsonschema_object( self, @@ -534,21 +561,21 @@ def jsonschema_object( case "examples", str(value): parsed_examples = value.split("; ") parsed_examples = self._cast_examples_to_declared_type( - expected_type, parsed_examples + property_id, expected_type, parsed_examples ) jsonschema_value = {property_feature_key: parsed_examples} case "examples", datetime(): value = value.strftime("%Y-%m-%dT%H:%M:%S") value = value.replace("T00:00:00", "") parsed_examples = self._cast_examples_to_declared_type( - expected_type, [value] + property_id, expected_type, [value] ) jsonschema_value = {property_feature_key: parsed_examples} case "examples", int(value) | float(value): value = float(value) parsed_examples = [int(value) if value.is_integer() else value] parsed_examples = self._cast_examples_to_declared_type( - expected_type, parsed_examples + property_id, expected_type, parsed_examples ) jsonschema_value = {property_feature_key: parsed_examples} case "enum", str(): From 10cadc93b8f167ccf94fb01da9d6863349125561 Mon Sep 17 00:00:00 2001 From: Alejandro Date: Mon, 23 Feb 2026 13:01:29 +0100 Subject: [PATCH 15/15] Remove legacy extra config load in read-lab-metadata --- relecov_tools/read_lab_metadata.py | 18 ++---------------- 1 file changed, 2 insertions(+), 16 deletions(-) diff --git a/relecov_tools/read_lab_metadata.py b/relecov_tools/read_lab_metadata.py index 530258a7f..2aee2ccc2 100755 --- a/relecov_tools/read_lab_metadata.py +++ b/relecov_tools/read_lab_metadata.py @@ -67,21 +67,6 @@ def __init__( ) raise FileNotFoundError(f"Metadata file {self.metadata_file} not found") - self.config_json = ConfigJson(extra_config=True) - self.configuration = self.config_json - self.institution_config = self.config_json.get_configuration( - "institutions_config" - ) - - self.readmeta_config = ( - self.configuration.get_configuration("read_lab_metadata") or {} - ) - default_project = self.readmeta_config.get("default_project") or "relecov" - self.project = (project or default_project).lower() - self.project_config = self._load_project_config( - self.readmeta_config, self.project, default_project - ) - if sample_list_file is None: stderr.print("[yellow]No samples_data.json file provided") self.log.warning("No samples_data.json file provided") @@ -121,6 +106,8 @@ def __init__( self.configuration.get_configuration("read_lab_metadata") or {} ) default_project = self.configuration.get_topic_data("generic", "project_name") + if not isinstance(default_project, str) or not default_project.strip(): + default_project = "relecov" self.project = (project or default_project).lower() self.project_config = self._load_project_config( self.readmeta_config, self.project, default_project @@ -259,7 +246,6 @@ def _load_project_config( ) merged = self._deep_merge_dicts(base_config, overrides or {}) merged.pop("projects", None) - merged.pop("default_project", None) return merged def _build_schema_field_map(self) -> dict[str, SchemaField]: