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joss_paper/figure_1.ipynb

Lines changed: 3 additions & 12 deletions
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@@ -147,26 +147,17 @@
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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
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"name": "stderr",
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"output_type": "stream",
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"text": [
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"/home/law/anaconda3/envs/zarrtraj-test/lib/python3.13/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n",
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" from .autonotebook import tqdm as notebook_tqdm\n"
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]
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}
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],
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"outputs": [],
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"source": [
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"from MDAnalysis.analysis.rms import RMSD\n",
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"import time\n",
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"\n",
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"def time_stride(reader_object):\n",
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" start = time.time()\n",
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" for ts in reader_object:\n",
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" pass\n",
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" pass\n",
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" stop = time.time()\n",
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"\n",
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" return stop - start"

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