deploy #58
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| name: deploy | |
| on: | |
| push: | |
| branches: [main, master] | |
| schedule: | |
| - cron: "0 3 * * *" # nightly rebuild (03:00 UTC) — data regenerated at deploy time | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| concurrency: | |
| group: pages | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: "20" | |
| - name: Install pipeline | |
| run: pip install ./pipeline | |
| - name: Clone data sources (shallow) | |
| run: | | |
| git clone --depth 1 --filter=blob:none https://github.com/bioconda/bioconda-recipes /tmp/bioconda-recipes | |
| git clone --depth 1 https://github.com/BioContainers/containers /tmp/containers | |
| - name: Build catalog (bioconda repodata + recipes + Dockerfiles) | |
| run: | | |
| python -m biocontainers_pipeline.cli build \ | |
| --out data \ | |
| --recipes-dir /tmp/bioconda-recipes/recipes \ | |
| --containers-dir /tmp/containers \ | |
| --repodata-cache /tmp/repodata | |
| - name: Build web | |
| working-directory: web | |
| run: | | |
| npm ci | |
| npm run build | |
| - name: Copy data into artifact | |
| run: cp -r data web/dist/data | |
| - uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: web/dist | |
| deploy: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| steps: | |
| - id: deployment | |
| uses: actions/deploy-pages@v4 |