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‎vignettes/web_only/Publication_records.Rmd‎

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@@ -46,78 +46,80 @@ package, as of 10 of March 2025. It may be useful if you are looking for case
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studies or examples of specific functionality.
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# Research articles
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1\. Cai, Lirong, Holger Kreft, Amanda Taylor, Julian Schrader, Wayne Dawson, Franz Essl, Mark van Kleunen, Jan Pergl, Petr Pyšek, and Marten Winter. “Climatic Stability and Geological History Shape Global Centers of Neo-and Paleoendemism in Seed Plants.” Proceedings of the National Academy of Sciences 120, no. 30 (2023): e2300981120.<br>
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[https://doi.org/10.1073/pnas.2300981120](https://doi.org/10.1073/pnas.2300981120)
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# Peer-reviewed research articles
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## 2025
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15\. Guerrero, P., Contador, T., Díaz, A., Escobar, C., Orlando, J., Marín, C., & Medina, P. (2025) Southern Islands Vascular Flora (SIVFLORA) dataset: A global plant database from Southern Ocean islands. *Scientific Data*.<br>
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[https://doi.org/10.1038/s41597-025-04702-9](https://doi.org/10.1038/s41597-025-04702-9)
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2\. Eva Benavides Rios, Jonathan Sadler, Laura Graham, Thomas J. Matthews, Species distribution models and island biogeography: Challenges and prospects, Global Ecology and Conservation, Volume 51, 2024, e02943, ISSN 2351-9894<br>
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[https://doi.org/10.1016/j.gecco.2024.e02943](https://doi.org/10.1016/j.gecco.2024.e02943)
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14\. Wunderlich, R.F., Jamoneau, A., Boutry, S., Hosni, M., & Bertrin, V.. (2025) Model-based management of macrophytes in shallow lakes under warming. *Journal of Environmental Management*.<br>
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[https://doi.org/10.1016/j.jenvman.2025.124543](https://doi.org/10.1016/j.jenvman.2025.124543)
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3\. Fan, Sy., Yang, Q., Li, Sp., Fristoe, T., Cadotte, M.W., Essl, F., Kreft, H., Pergl, J., Pyšek, P., Weigelt, P., Kartesz, J., Nishino, M., Wieringa, J., & van Kleunen, M. A latitudinal gradient in Darwin’s naturalization conundrum at the global scale for flowering plants. Nat Commun 14, 6244 (2023).<br>
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[https://doi.org/10.1038/s41467-023-41607-w](https://doi.org/10.1038/s41467-023-41607-w)
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13\. Dugerdil, L., Peyron, O., Violle, C., Joannin, S., Ménot, G., Denelle, P., Bruelheide, H., Chytrý, M., Field, R., Hatim, M. Z., Gholizadeh, H., Dolezal, J., Pillar, V. D., Shaltout, K. H., Schrodt, F., & Garnier, E. (2025) Functional Signatures of Surface Pollen and Vegetation Are Broadly Similar: Good News for Past Reconstructions of Vegetation. *Journal of Biogeography*.<br>
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[https://doi.org/10.1111/jbi.15100](https://doi.org/10.1111/jbi.15100)
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<br>
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12\. Frisk, C., & Hanslin, M. (2025) Optimizing plant species composition of green roofs for ecological
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functionality and biodiversity conservation. *Urban Ecosystems*.<br>
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[https://doi.org/10.1007/s11252-024-01657-4](https://doi.org/10.1007/s11252-024-01657-4)
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4\. Roeble, L., van Benthem, K.J., Weigelt, P., Kreft, H., Knope, M., Mandel, J., Vargas, P., Etienne, R., & Valente, L. Island biogeography of the megadiverse plant family Asteraceae. Nat Commun 15, 7276 (2024).<br>
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[https://doi.org/10.1038/s41467-024-51556-7](https://doi.org/10.1038/s41467-024-51556-7)
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## 2024
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11\. Cai, L., Kreft, H., Denelle, H., Taylor, A., Craven, D., Dawson, W., Essl, F., van Kleunen, M., Pergl, J., Pyšek, P., Winter, M., Cabezas, F., Wagner, V., Pelser, P., Wieringa, J. & Weigelt, P. (2024) Environmental filtering, not dispersal history, explains global patterns of phylogenetic turnover in seed plants at deep evolutionary timescales. *Nature in Ecology and Evolution*.<br>
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[https://doi.org/10.1038/s41559-024-02599-y](https://doi.org/10.1038/s41559-024-02599-y)
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10\. Barrasso, C., Krüger, R., Eltner, A., Cord, A. (2024) Mapping indicator species of segetal flora for result-based payments in arable land using UAV imagery and deep learning. *Ecological Indicators*.<br>
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[https://doi.org/10.1016/j.ecolind.2024.112780](https://doi.org/10.1016/j.ecolind.2024.112780)
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5\. Delavaux, C.S., Crowther, T.W., Bever, J.D., Weigelt, P., & Gora, E. Mutualisms weaken the latitudinal diversity gradient among oceanic islands. Nature 627, 335–339 (2024).<br>
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[https://doi.org/10.1038/s41586-024-07110-y](https://doi.org/10.1038/s41586-024-07110-y)
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9\. Schrader, J., Weigelt, P., Cai, L., Westoby, M., Fernández-Palacios, J.-M., Cabezas, F., Plunkett, G., Ranker, T., Triantis, K., Trigas, P., Kubota, Y. & Kreft, H. (2024) Islands are key for protecting the world’s plant endemism. *Nature*.<br>
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[https://doi.org/10.1038/s41586-024-08036-1](https://doi.org/10.1038/s41586-024-08036-1)
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6\. Avery L. Russell, Stephen L. Buchmann, John S. Ascher, Zhiheng Wang, Ricardo Kriebel, Diana D. Jolles, Michael C. Orr, Alice C. Hughes, Global patterns and drivers of buzzing bees and poricidal plants, Current Biology, Volume 34, Issue 14, 2024, Pages 3055-3063.e5, ISSN 0960-9822<br>
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[https://doi.org/10.1016/j.cub.2024.05.065](https://doi.org/10.1016/j.cub.2024.05.065)
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8\. Aros-Mualin, D. Kessler, M. Untangling poikilohydry and desiccation tolerance: evolutionary and macroecological drivers in ferns. *Annals of Botany* mcae167.<br>
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[https://doi.org/10.1093/aob/mcae167](https://doi.org/10.1093/aob/mcae167)
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7\. Chumová, Z., Havlíčková, E., Zeisek, V., Šemberová, K., Mandáková, T., Euston-Brown, D. and Trávníček, P. (2024), Deciphering Pteronia's evolution in the Cape Floristic Region: A comprehensive study disputes polyploid deficiency and affirms diploid radiation. Plant J, 119: 2236-2254.<br>
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7\. Chumová, Z., Havlíčková, E., Zeisek, V., Šemberová, K., Mandáková, T., Euston-Brown, D. and Trávníček, P. (2024), Deciphering Pteronia's evolution in the Cape Floristic Region: A comprehensive study disputes polyploid deficiency and affirms diploid radiation. *Plant J*, 119: 2236-2254.<br>
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[https://doi.org/10.1111/tpj.16914](https://doi.org/10.1111/tpj.16914)
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8\. Domazetoski, V., Kreft, H., Bestova, H., Wieder, P., Koynov, R., Zarei, A., & Weigelt, P. (2024) Using natural language processing to extract plant functional traits from unstructured text. BioRXiv<br>
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[https://doi.org/10.1101/2023.11.06.565787](https://doi.org/10.1101/2023.11.06.565787)
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6\. Avery L. Russell, Stephen L. Buchmann, John S. Ascher, Zhiheng Wang, Ricardo Kriebel, Diana D. Jolles, Michael C. Orr, Alice C. Hughes, Global patterns and drivers of buzzing bees and poricidal plants, *Current Biology*, Volume 34, Issue 14, 2024, Pages 3055-3063.e5, ISSN 0960-9822<br>
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[https://doi.org/10.1016/j.cub.2024.05.065](https://doi.org/10.1016/j.cub.2024.05.065)
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9\. Aros-Mualin, D. Kessler, M. Untangling poikilohydry and desiccation tolerance: evolutionary and macroecological drivers in ferns Annals of Botany mcae167.<br>
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[https://doi.org/10.1093/aob/mcae167](https://doi.org/10.1093/aob/mcae167)
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5\. Delavaux, C.S., Crowther, T.W., Bever, J.D., Weigelt, P., & Gora, E. Mutualisms weaken the latitudinal diversity gradient among oceanic islands. *Nature* 627, 335–339 (2024).<br>
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[https://doi.org/10.1038/s41586-024-07110-y](https://doi.org/10.1038/s41586-024-07110-y)
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10\. Schrader, J., Weigelt, P., Cai, L., Westoby, M., Fernández-Palacios, J.-M., Cabezas, F., Plunkett, G., Ranker, T., Triantis, K., Trigas, P., Kubota, Y. & Kreft, H. (2024) Islands are key for protecting the world’s plant endemism. Nature.<br>
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[https://doi.org/10.1038/s41586-024-08036-1](https://doi.org/10.1038/s41586-024-08036-1)
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4\. Roeble, L., van Benthem, K.J., Weigelt, P., Kreft, H., Knope, M., Mandel, J., Vargas, P., Etienne, R., & Valente, L. Island biogeography of the megadiverse plant family Asteraceae. *Nat Commun* 15, 7276 (2024).<br>
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[https://doi.org/10.1038/s41467-024-51556-7](https://doi.org/10.1038/s41467-024-51556-7)
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11\. Barrasso, C., Krüger, R., Eltner, A., Cord, A. (2024) Mapping indicator species of segetal flora for result-based payments in arable land using UAV imagery and deep learning. Ecological Indicators.<br>
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[https://doi.org/10.1016/j.ecolind.2024.112780](https://doi.org/10.1016/j.ecolind.2024.112780)
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<br>
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3\. Fan, Sy., Yang, Q., Li, Sp., Fristoe, T., Cadotte, M.W., Essl, F., Kreft, H., Pergl, J., Pyšek, P., Weigelt, P., Kartesz, J., Nishino, M., Wieringa, J., & van Kleunen, M. A latitudinal gradient in Darwin’s naturalization conundrum at the global scale for flowering plants. *Nat Commun* 14, 6244 (2023).<br>
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[https://doi.org/10.1038/s41467-023-41607-w](https://doi.org/10.1038/s41467-023-41607-w)
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12\. Cai, L., Kreft, H., Denelle, H., Taylor, A., Craven, D., Dawson, W., Essl, F., van Kleunen, M., Pergl, J., Pyšek, P., Winter, M., Cabezas, F., Wagner, V., Pelser, P., Wieringa, J. & Weigelt, P. (2024) Environmental filtering, not dispersal history, explains global patterns of phylogenetic turnover in seed plants at deep evolutionary timescales. Nature in Ecology and Evolution.<br>
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[https://doi.org/10.1038/s41559-024-02599-y](https://doi.org/10.1038/s41559-024-02599-y)
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13\. Frisk, C., & Hanslin, M. (2025) Optimizing plant species composition of green roofs for ecological
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functionality and biodiversity conservation. Urban Ecosystems.<br>
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[https://doi.org/10.1007/s11252-024-01657-4](https://doi.org/10.1007/s11252-024-01657-4)
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<br>
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2\. Eva Benavides Rios, Jonathan Sadler, Laura Graham, Thomas J. Matthews, Species distribution models and island biogeography: Challenges and prospects, *Global Ecology and Conservation*, Volume 51, (2024), e02943, ISSN 2351-9894<br>
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[https://doi.org/10.1016/j.gecco.2024.e02943](https://doi.org/10.1016/j.gecco.2024.e02943)
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14\. Dugerdil, L., Peyron, O., Violle, C., Joannin, S., Ménot, G., Denelle, P., Bruelheide, H., Chytrý, M., Field, R., Hatim, M. Z., Gholizadeh, H., Dolezal, J., Pillar, V. D., Shaltout, K. H., Schrodt, F., & Garnier, E. (2025) Functional Signatures of Surface Pollen and Vegetation Are Broadly Similar: Good News for Past Reconstructions of Vegetation. Journal of Biogeography.<br>
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[https://doi.org/10.1111/jbi.15100](https://doi.org/10.1111/jbi.15100)
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## 2023
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1\. Cai, Lirong, Holger Kreft, Amanda Taylor, Julian Schrader, Wayne Dawson, Franz Essl, Mark van Kleunen, Jan Pergl, Petr Pyšek, and Marten Winter. “Climatic Stability and Geological History Shape Global Centers of Neo-and Paleoendemism in Seed Plants.” *Proceedings of the National Academy of Sciences* 120, no. 30 (2023): e2300981120.<br>
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[https://doi.org/10.1073/pnas.2300981120](https://doi.org/10.1073/pnas.2300981120)
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15\. Wunderlich, R.F., Jamoneau, A., Boutry, S., Hosni, M., & Bertrin, V.. (2025) Model-based management of macrophytes in shallow lakes under warming. Journal of Environmental Management.<br>
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[https://doi.org/10.1016/j.jenvman.2025.124543](https://doi.org/10.1016/j.jenvman.2025.124543)
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16\. Guerrero, P., Contador, T., Díaz, A., Escobar, C., Orlando, J., Marín, C., & Medina, P. (2025) Southern Islands Vascular Flora (SIVFLORA) dataset: A global plant database from Southern Ocean islands. Scientific Data.<br>
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[https://doi.org/10.1038/s41597-025-04702-9](https://doi.org/10.1038/s41597-025-04702-9)
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<br>
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# Preprint
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1\. Domazetoski, V., Kreft, H., Bestova, H., Wieder, P., Koynov, R., Zarei, A., & Weigelt, P. (2024) Using natural language processing to extract plant functional traits from unstructured text. *BioRXiv*<br>
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[https://doi.org/10.1101/2023.11.06.565787](https://doi.org/10.1101/2023.11.06.565787)
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<br>

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