collecting sample metadata

[nicolo-tellini]

Hi @BioOmics ,

I am trying recovering metadata and noticed that by using both either (SRR) code or sample code (SAMN) the metadata downloaded are those related to the sequencing, while in the second case I would expect those related to the sample. I paste an example to clarify. Below the output running:

iseq -m -i SRR1119149

iseq -m -i SAMN02427192

SRR1119149	PRJNA230139	SRP035439	SAMN02427192	SRS534040	SRX433888	SRA127687	230603	Saccharomyces uvarum	ILLUMINA	Illumina HiSeq 2000			SINGLE	WGS	GENOMIC	RANDOM	5165060	521671060	FCT/UNL	2014-06-17	2015-06-19	Illumina HiSeq 2000 sequencing: Saccharomyces uvarum CRUB1780 gDNA	Saccharomyces uvarum Genome sequencing	PRJNA230139	Saccharomyces uvarum CRUB 1780	run314.CR109_ACAGTG_L008_R1.fastq	441862357	e637a3ba6462987c77fb9ef77fc5164a	ftp.sra.ebi.ac.uk/vol1/fastq/SRR111/009/SRR1119149/SRR1119149.fastq.gz	fasp.sra.ebi.ac.uk:/vol1/fastq/SRR111/009/SRR1119149/SRR1119149.fastq.gzftp.sra.ebi.ac.uk/vol1/fastq/SRR111/009/SRR1119149/SRR1119149.fastq.gz							343958229	de5894c0231e692efa6dd3cb2e156d6f	ftp.sra.ebi.ac.uk/vol1/srr/SRR111/009/SRR1119149	fasp.sra.ebi.ac.uk:/vol1/srr/SRR111/009/SRR1119149	ftp.sra.ebi.ac.uk/vol1/srr/SRR111/009/SRR1119149	Saccharomyces uvarum CRUB 1780		Generic sample from Saccharomyces uvarum		2014-06-16		
SRR1119149	PRJNA230139	SRP035439	SAMN02427192	SRS534040	SRX433888	SRA127687	230603	Saccharomyces uvarum	ILLUMINA	Illumina HiSeq 2000			SINGLE	WGS	GENOMIC	RANDOM	5165060	521671060	FCT/UNL	2014-06-17	2015-06-19	Illumina HiSeq 2000 sequencing: Saccharomyces uvarum CRUB1780 gDNA	Saccharomyces uvarum Genome sequencing	PRJNA230139	Saccharomyces uvarum CRUB 1780	run314.CR109_ACAGTG_L008_R1.fastq	441862357	e637a3ba6462987c77fb9ef77fc5164a	ftp.sra.ebi.ac.uk/vol1/fastq/SRR111/009/SRR1119149/SRR1119149.fastq.gz	fasp.sra.ebi.ac.uk:/vol1/fastq/SRR111/009/SRR1119149/SRR1119149.fastq.gzftp.sra.ebi.ac.uk/vol1/fastq/SRR111/009/SRR1119149/SRR1119149.fastq.gz							343958229	de5894c0231e692efa6dd3cb2e156d6f	ftp.sra.ebi.ac.uk/vol1/srr/SRR111/009/SRR1119149	fasp.sra.ebi.ac.uk:/vol1/srr/SRR111/009/SRR1119149	ftp.sra.ebi.ac.uk/vol1/srr/SRR111/009/SRR1119149	Saccharomyces uvarum CRUB 1780		Generic sample from Saccharomyces uvarum		2014-06-16		

what instead I was expecting, using as input SAMN02427192 are the info at the link:

https://www.ebi.ac.uk/ena/browser/view/SAMN02427192

is there any way to obtain them ? Apologies if this is already implemented and I missed it.

Thanks

Nic

[BioOmics]

What information do you need, I think the information in the metadata should include almost all the information about this "SRR"

[nicolo-tellini]

Actually, what I am trying to obtain are the info collected under SAMN02427192 i.e Geo area, Sample Source, Lat, Lon (when available) etc..