update CI configs (#158)

Author: a-r-j

.github/workflows/autopublish.yaml

@@ -15,10 +15,10 @@ jobs:
 
     steps:
       - name: Checkout source
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.x"
 

.github/workflows/changelog-enforcer.yaml

@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: dangoslen/changelog-enforcer@v3
         with:
           skipLabels: 'skip-changelog'

.github/workflows/publish.yaml

@@ -13,10 +13,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.x"
           cache: "pip"
@@ -32,10 +32,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.x"
           cache: "pip"
@@ -54,10 +54,10 @@ jobs:
 
     steps:
       - name: Checkout source
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.x"
 

.github/workflows/tests.yaml

@@ -26,14 +26,14 @@ jobs:
         python-version: [3.7, 3.8, 3.9, "3.10", 3.11]
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         # See: https://github.com/marketplace/actions/setup-miniconda
       - name: Setup miniconda
-        uses: conda-incubator/setup-miniconda@v2
+        uses: conda-incubator/setup-miniconda@v3
         with:
           auto-update-conda: true
-          miniforge-variant: Mambaforge
-          conda-channels: conda-forge
+          miniforge-variant: Miniforge3
+          channels: conda-forge
           python-version: ${{ matrix.python-version }}
           use-mamba: true
       - name: Install BioPandas

setup.py

@@ -50,6 +50,8 @@
              'Programming Language :: Python :: 3.7',
              'Programming Language :: Python :: 3.8',
              'Programming Language :: Python :: 3.9',
+             'Programming Language :: Python :: 3.10',
+             'Programming Language :: Python :: 3.11',
              'Topic :: Scientific/Engineering',
       ],
       long_description_content_type='text/markdown',