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Merge pull request #719 from HLWeil/master
Prepare LabProtocol and LabProcess for Release
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‎LabProcess/examples/0.1-DRAFT/labprocess_1_SamplePreparation.json‎

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{
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"@context": [
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"http://schema.org/",
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{
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"LabProtocol": "https://bioschemas.org/LabProtocol",
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"LabProcess": "https://bioschemas.org/LabProcess",
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"executesLabProtocol": "https://bioschemas.org/properties/executesLabProtocol",
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"parameterValue": "https://bioschemas.org/properties/parameterValue",
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"additionalProperty": "https://bioschemas.org/properties/additionalProperty",
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"parameter": "https://bioschemas.org/properties/parameter",
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"labEquipment": "https://bioschemas.org/properties/labEquipment",
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"intendedUse": "https://bioschemas.org/properties/intendedUse"
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}
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],
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"@type": [
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"LabProcess"
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],
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"name": "Cell Cultivation",
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"executesProtocol": {
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"@type": [
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"LabProtocol"
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],
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"intendedUse": {
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"@type": "DefinedTerm",
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"name": "growth protocol",
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"termCode": "http://www.ebi.ac.uk/efo/EFO_0003789"
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},
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"labEquipment": {
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"@type": [
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"DefinedTerm"
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],
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"alternateName": "Photon System Instruments, FMT 150/400-RB",
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"name": "bioreactor",
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"termCode": "http://purl.obolibrary.org/obo/OBI_0001046"
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},
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"parameter": [
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{
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"@type": "PropertyValue",
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"name": "temperature",
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"propertyID": "http://purl.obolibrary.org/obo/PATO_0000146"
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},
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{
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"@type": "PropertyValue",
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"name": "culture medium",
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"propertyID": "http://purl.obolibrary.org/obo/OBI_0000079"
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}
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]
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},
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"parameterValue": [
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{
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"@type": "PropertyValue",
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"name": "temperature",
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"value": "20",
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"unitCode": "http://purl.obolibrary.org/obo/UO_0000027",
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"unitText": "degree Celsius",
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"propertyID": "http://purl.obolibrary.org/obo/PATO_0000146"
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},
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{
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"@type": "PropertyValue",
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"name": "culture medium",
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"value": "TAP medium",
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"valueReference": "https://bioregistry.io/dpbo:0000121",
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"propertyID": "http://purl.obolibrary.org/obo/OBI_0000079"
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}
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],
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"agent": {
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"@type": "Person",
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"givenName": "Benedikt",
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"familyName": "Venn"
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},
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"endTime": "2012-04-23T18:25:43.511Z",
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"object": [
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{
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"@type": [
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"Sample"
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],
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"name": "chlamy_source",
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"additionalProperty": [
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{
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"@type": "PropertyValue",
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"name": "organism",
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"value": "Chlamydomonas reinhardtii",
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"propertyID": "http://purl.obolibrary.org/obo/OBI_0100026",
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"valueReference": "http://purl.obolibrary.org/obo/NCBITaxon_3055"
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}
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]
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}
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],
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"result": [
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{
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"@type": [
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"Sample"
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],
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"name": "reactor_35_A",
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"additionalProperty": []
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}
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]
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}

‎LabProcess/examples/0.1-DRAFT/labprocess_2_Measurement.json‎

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{
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"@context": [
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"http://schema.org/",
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{
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"LabProtocol": "https://bioschemas.org/LabProtocol",
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"LabProcess": "https://bioschemas.org/LabProcess",
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"executesLabProtocol": "https://bioschemas.org/properties/executesLabProtocol",
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"parameterValue": "https://bioschemas.org/properties/parameterValue",
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"additionalProperty": "https://bioschemas.org/properties/additionalProperty",
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"parameter": "https://bioschemas.org/properties/parameter",
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"labEquipment": "https://bioschemas.org/properties/labEquipment",
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"intendedUse": "https://bioschemas.org/properties/intendedUse"
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}
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],
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"@type": [
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"LabProcess"
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],
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"name": "Mass Spectrometry",
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"executesProtocol": {
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"@type": [
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"LabProtocol"
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],
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"intendedUse": {
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"@type": "DefinedTerm",
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"name": "protein measurement",
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"termCode": "http://www.ebi.ac.uk/efo/EFO_0004747"
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},
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"labEquipment": {
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"@type": [
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"DefinedTerm"
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],
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"name": "mass spectrometer",
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"termCode": "http://purl.obolibrary.org/obo/OBI_0000049"
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},
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"parameter": [
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{
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"@type": "PropertyValue",
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"name": "flow rate",
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"propertyID": "http://purl.obolibrary.org/obo/PATO_0001574"
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},
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{
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"@type": "PropertyValue",
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"name": "instrument model",
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"propertyID": "http://purl.obolibrary.org/obo/MS_1000031"
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}
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]
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},
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"parameterValue": [
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{
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"@type": "PropertyValue",
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"name": "flow rate",
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"value": "500",
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"unitCode": "http://purl.obolibrary.org/obo/UO_0000271",
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"unitText": "microliters per minute",
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"propertyID": "http://purl.obolibrary.org/obo/PATO_0001574"
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},
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{
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"@type": "PropertyValue",
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"name": "instrument model",
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"value": "3200 QTRAP",
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"valueReference": "http://purl.obolibrary.org/obo/MS_1000651",
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"propertyID": "http://purl.obolibrary.org/obo/MS_1000031"
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}
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],
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"agent": {
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"@type": "Person",
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"givenName": "Fred",
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"familyName": "Sommer"
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},
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"endTime": "2012-04-23T18:25:43.511Z",
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"object": [
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{
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"@type": [
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"Sample"
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],
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"name": "reactor_35_A"
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}
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],
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"result": [
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{
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"@type": [
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"File"
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],
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"@id": "/rawData/35_A.wiff",
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"name": "/rawData/35_A.wiff"
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}
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]
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}

‎LabProcess/examples/0.1-DRAFT/labprocess_3_Computational.json‎

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{
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"@context": [
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"http://schema.org/",
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{
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"LabProtocol": "https://bioschemas.org/LabProtocol",
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"LabProcess": "https://bioschemas.org/LabProcess",
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"executesLabProtocol": "https://bioschemas.org/properties/executesLabProtocol",
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"parameterValue": "https://bioschemas.org/properties/parameterValue",
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"additionalProperty": "https://bioschemas.org/properties/additionalProperty",
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"parameter": "https://bioschemas.org/properties/parameter",
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"labEquipment": "https://bioschemas.org/properties/labEquipment",
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"intendedUse": "https://bioschemas.org/properties/intendedUse"
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}
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],
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"@type": [
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"LabProcess"
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],
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"name": "MS Processing",
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"executesProtocol": {
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"@type": [
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"LabProtocol"
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],
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"intendedUse": {
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"@type": "DefinedTerm",
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"name": "mass spectrometry analysis",
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"termCode": "http://purl.obolibrary.org/obo/OBI_0200085"
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},
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"labEquipment": {
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"@type": [
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"DefinedTerm"
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],
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"name": "computer",
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"termCode": "http://purl.obolibrary.org/obo/OBI_0400107"
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},
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"parameter": [
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{
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"@type": "PropertyValue",
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"name": "quantitation software name",
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"propertyID": "http://purl.obolibrary.org/obo/MS_1001139"
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}
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]
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},
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"parameterValue": [
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{
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"@type": "PropertyValue",
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"name": "quantitation software name",
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"value": "MaxQuant",
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"valueReference": "http://purl.obolibrary.org/obo/MS_1001583",
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"propertyID": "http://purl.obolibrary.org/obo/MS_1001139"
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}
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],
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"agent": {
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"@type": "Person",
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"givenName": "David",
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"familyName": "Zimmer"
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},
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"endTime": "2012-04-23T18:25:43.511Z",
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"object": [
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{
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"@type": [
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"File"
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],
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"@id": "/rawData/35_A.wiff",
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"name": "/rawData/35_A.wiff"
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}
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],
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"result": [
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{
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"@type": [
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"File"
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],
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"@id": "/results/35_A.tsv",
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"name": "/results/35_A.tsv"
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}
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]
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}

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