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lines changed Original file line number Diff line number Diff line change @@ -173,7 +173,7 @@ update_AA_palette <- function(colors=NULL){
173173update_B_palette <- function (colors = NULL ){
174174 # # BStrings don't have a default palette
175175 # # thus their default palette function is just \() return(character(0L))
176- .update_X_palette(colors , " BSTRING_COLORED_LETTERS " ,
176+ .update_X_palette(colors , " B_COLORED_LETTERS " ,
177177 NULL ,
178178 \(){ character (0L ) })
179179}
@@ -182,4 +182,4 @@ add_colors <- function(x) UseMethod("add_colors")
182182add_colors.default <- identity
183183add_colors.DNA <- add_colors.RNA <- function (x ){ .add_xstring_colors(x , " DNA_AND_RNA_COLORED_LETTERS" ) }
184184add_colors.AA <- function (x ){ .add_xstring_colors(x , " AA_COLORED_LETTERS" ) }
185- add_colors.B <- function (x ) { .add_xstring_colors(x , " BSTRING_COLORED_LETTERS " ) }
185+ add_colors.B <- function (x ) { .add_xstring_colors(x , " B_COLORED_LETTERS " ) }
Original file line number Diff line number Diff line change 1313 .Call2(" init_AAlkups" ,
1414 AA_STRING_CODEC @ enc_lkup , AA_STRING_CODEC @ dec_lkup ,
1515 PACKAGE = pkgname )
16-
16+
1717 assign(" DNA_AND_RNA_COLORED_LETTERS" , make_DNA_AND_RNA_COLORED_LETTERS(), envir = .pkgenv )
1818 assign(" AA_COLORED_LETTERS" , make_AA_COLORED_LETTERS(), envir = .pkgenv )
19- assign(" BSTRING_COLORED_LETTERS " , character (0L ), envir = .pkgenv )
19+ assign(" B_COLORED_LETTERS " , character (0L ), envir = .pkgenv )
2020
2121 option_name <- " Biostrings.coloring"
2222 if (! (option_name %in% names(.Options )))
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