vLLM enhancements (#36) #216

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python package

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.11", "3.12", "3.13"]

	steps:
	- uses: actions/checkout@v4
	- name: Install the latest version of uv and set the python version
	uses: astral-sh/setup-uv@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install cURL Headers (for hic-straw install/build)
	run: sudo apt-get install libcurl4-openssl-dev
	- name: Install python build/environment requirements
	run: uv pip install -q pip wheel pytest-cov nbqa pylint
	- name: Install package
	run: uv pip install -q .[bulk_rna,benchmarking,test,notebook]
	- name: Print environment
	run: uv pip freeze
	- name: Test package import
	run: pushd /tmp; python -c "import bmfm_targets"; popd;
	- name: Run package tests
	run: python -m pytest -v --durations=40 bmfm_targets/tests/

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